SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    129601 3brf:A (2.47) BS03 peptide N/A GO:0000978 ... N/A 18381292
    129602 3brf:A (2.47) BS04 SOR N/A GO:0000978 ... N/A 18381292
    129603 3brf:A (2.47) BS05 SOR N/A GO:0000978 ... N/A 18381292
    129604 3brg:C (2.2) BS01 dna ? GO:0000978 ... P31266 18381292
    129605 3brg:C (2.2) BS02 dna ? GO:0000978 ... P31266 18381292
    129606 3brh:A (2.2) BS01 peptide 3.1.3.48 GO:0004725 ... Q9Y2R2 N/A
    129607 3brh:B (2.2) BS01 peptide 3.1.3.48 GO:0004725 ... Q9Y2R2 N/A
    129608 3brk:X (2.1) BS01 SO4 2.7.7.27 GO:0005978 ... P39669 18355040
    129609 3brk:X (2.1) BS02 SO4 2.7.7.27 GO:0005978 ... P39669 18355040
    129610 3brk:X (2.1) BS03 SO4 2.7.7.27 GO:0005978 ... P39669 18355040
    129611 3brl:A (1.9) BS01 peptide ? GO:0000132 ... Q24117 N/A
    129612 3brm:A (2.29) BS01 ONL 3.5.1.2 GO:0004359 ... O31465 18459799
    129613 3brm:B (2.29) BS01 ONL 3.5.1.2 GO:0004359 ... O31465 18459799
    129614 3brn:A (2.0) BS01 SRO ? GO:0030682 ... Q09JR9 18445596 MOAD: Kd<2nM
    129615 3brn:B (2.0) BS01 SRO ? GO:0030682 ... Q09JR9 18445596 MOAD: Kd<2nM
    129616 3brp:A (1.85) BS01 BLA ? GO:0009535 ... P00306 N/A
    129617 3brp:A (1.85) BS02 BLA ? GO:0009535 ... P00306 N/A
    129618 3brp:B (1.85) BS01 BLA ? GO:0009535 ... P00311 N/A
    129619 3brp:B (1.85) BS02 BLA ? GO:0009535 ... P00311 N/A
    129620 3brw:D (3.4) BS01 MG 3.6.5.2 GO:0003924 ... P61224 18309292
    129621 3brw:D (3.4) BS02 BEF 3.6.5.2 GO:0003924 ... P61224 18309292
    129622 3brw:D (3.4) BS03 GDP 3.6.5.2 GO:0003924 ... P61224 18309292
    129623 3brx:A (2.5) BS01 CA ? GO:0001786 ... P93157 18441010
    129624 3brx:A (2.5) BS02 CA ? GO:0001786 ... P93157 18441010
    129625 3brx:A (2.5) BS03 CA ? GO:0001786 ... P93157 18441010
    129626 3bry:A (3.2) BS01 C8E ? GO:0009279 ... Q9RBW8 18559855
    129627 3bry:B (3.2) BS01 C8E ? GO:0009279 ... Q9RBW8 18559855
    129628 3brz:A (3.2) BS01 C8E ? GO:0009279 ... A5W4F4 18559855
    129629 3brz:A (3.2) BS02 C8E ? GO:0009279 ... A5W4F4 18559855
    129630 3brz:A (3.2) BS03 C8E ? GO:0009279 ... A5W4F4 18559855
    129631 3brz:A (3.2) BS04 C8E ? GO:0009279 ... A5W4F4 18559855
    129632 3bs0:A (2.6) BS01 C8E ? GO:0009279 ... A5W4F4 18559855
    129633 3bs0:A (2.6) BS02 C8E ? GO:0009279 ... A5W4F4 18559855
    129634 3bs0:B (2.6) BS01 C8E ? GO:0009279 ... A5W4F4 18559855
    129635 3bs0:B (2.6) BS02 C8E ? GO:0009279 ... A5W4F4 18559855
    129636 3bs1:A (1.6) BS01 dna ? GO:0000156 ... P0A0I7 18462677
    129637 3bs1:A (1.6) BS02 dna ? GO:0000156 ... P0A0I7 18462677
    129638 3bs1:A (1.6) BS03 MG ? GO:0000156 ... P0A0I7 18462677
    129639 3bs4:A (1.6) BS01 peptide ? N/A O58059 N/A
    129640 3bs6:A (1.8) BS01 CA ? GO:0016020 ... P25714 18234665
    129641 3bs6:A (1.8) BS02 EDO ? GO:0016020 ... P25714 18234665
    129642 3bs8:A (2.3) BS01 PMP 5.4.3.8 GO:0003824 ... P30949 20946885
    129643 3bsa:A (2.3) BS01 1PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18242088
    129644 3bsa:B (2.3) BS01 1PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18242088
    129645 3bsb:B (2.8) BS01 rna ? GO:0003723 ... Q14671 18328718
    129646 3bsc:A (2.65) BS01 2PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18242088 BindingDB: IC50=33000nM
    129647 3bsc:B (2.65) BS01 2PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18242088 BindingDB: IC50=33000nM
    129648 3bsd:A (2.3) BS01 BCL ? GO:0015979 ... Q46393 15111109
    129649 3bsd:A (2.3) BS02 BCL ? GO:0015979 ... Q46393 15111109
    129650 3bsd:A (2.3) BS03 BCL ? GO:0015979 ... Q46393 15111109
    129651 3bsd:A (2.3) BS04 BCL ? GO:0015979 ... Q46393 15111109
    129652 3bsd:A (2.3) BS05 BCL ? GO:0015979 ... Q46393 15111109
    129653 3bsd:A (2.3) BS06 BCL ? GO:0015979 ... Q46393 15111109
    129654 3bsd:A (2.3) BS07 BCL ? GO:0015979 ... Q46393 15111109
    129655 3bsd:A (2.3) BS08 BCL ? GO:0015979 ... Q46393 15111109
    129656 3bsf:A (2.9) BS01 ADE 3.2.2.9 GO:0003824 ... Q7XA67 N/A
    129657 3bsf:B (2.9) BS01 ADE 3.2.2.9 GO:0003824 ... Q7XA67 N/A
    129658 3bsg:A (1.95) BS01 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129659 3bsg:A (1.95) BS02 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129660 3bsg:A (1.95) BS03 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129661 3bsh:A (3.0) BS01 BGC 3.2.1.1 GO:0004556 ... P00693 18588886
    129662 3bsh:A (3.0) BS02 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129663 3bsh:A (3.0) BS03 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129664 3bsh:A (3.0) BS04 CA 3.2.1.1 GO:0004556 ... P00693 18588886
    129665 3bsn:A (1.8) BS01 rna 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129666 3bsn:A (1.8) BS02 rna 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129667 3bsn:A (1.8) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129668 3bsn:A (1.8) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129669 3bsn:A (1.8) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129670 3bsn:A (1.8) BS06 N5C 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129671 3bso:A (1.74) BS01 rna 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129672 3bso:A (1.74) BS02 rna 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129673 3bso:A (1.74) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129674 3bso:A (1.74) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129675 3bso:A (1.74) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129676 3bso:A (1.74) BS06 CTP 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    129677 3bss:A (2.3) BS01 UD4 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129678 3bsu:A (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129679 3bsu:A (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129680 3bsu:B (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129681 3bsu:B (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129682 3bsu:C (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129683 3bsu:C (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129684 3bsu:C (2.1) BS03 MG 3.1.26.4 N/A O60930 18337749
    129685 3bsu:F (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129686 3bsu:F (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129687 3bsu:G (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129688 3bsu:G (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129689 3bsu:H (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749
    129690 3bsu:H (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749
    129691 3bsx:A (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718
    129692 3bsx:B (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718
    129693 3bsy:A (1.8) BS01 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129694 3bsy:A (1.8) BS02 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129695 3bsy:B (1.8) BS01 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129696 3bsy:B (1.8) BS02 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129697 3bsy:C (1.8) BS01 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129698 3bsy:C (1.8) BS02 ACO 2.3.1.203 GO:0006487 ... Q0P9D1 18667421
    129699 3bsz:E (3.38) BS01 RTL ? GO:0001523 ... P02753 19021760
    129700 3bsz:F (3.38) BS01 RTL ? GO:0001523 ... P02753 19021760
    129701 3bt7:A (2.43) BS01 rna 2.1.1.-
    2.1.1.35
    GO:0000049 ... P23003 18451029
    129702 3bt7:B (2.43) BS01 rna 2.1.1.-
    2.1.1.35
    GO:0000049 ... P23003 18451029
    129703 3bt9:A (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285
    129704 3bt9:B (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285
    129705 3bta:A (3.2) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 9783750
    129706 3btc:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285
    129707 3btd:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129708 3bte:E (1.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129709 3btf:E (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129710 3btg:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129711 3bth:E (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129712 3bti:A (2.85) BS01 BER ? GO:0003677 ... P0A0N3 18616285
    129713 3btj:A (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285
    129714 3btj:B (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285
    129715 3btk:E (1.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129716 3btl:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285
    129717 3btm:E (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129718 3bto:A (1.66) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129719 3bto:A (1.66) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129720 3bto:A (1.66) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9003191
    129721 3bto:A (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    129722 3bto:B (1.66) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129723 3bto:B (1.66) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129724 3bto:B (1.66) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9003191
    129725 3bto:B (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    129726 3bto:C (1.66) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129727 3bto:C (1.66) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129728 3bto:C (1.66) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9003191
    129729 3bto:C (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    129730 3bto:D (1.66) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129731 3bto:D (1.66) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    129732 3bto:D (1.66) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9003191
    129733 3bto:D (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    129734 3btp:A (2.3) BS01 peptide ? GO:0003677 ... P08062 18678909
    129735 3btq:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129736 3btr:C (2.6) BS01 peptide ? N/A P52293 18319300
    129737 3bts:A (2.7) BS01 NAD ? GO:0000122 ... P04387 18292341
    129738 3bts:B (2.7) BS01 NAD ? GO:0000122 ... P04387 18292341
    129739 3btt:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129740 3btw:E (2.05) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10222201
    129741 3btx:A (2.0) BS01 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129742 3btx:A (2.0) BS02 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129743 3btx:A (2.0) BS03 MG 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129744 3bty:A (2.35) BS01 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129745 3bty:A (2.35) BS02 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129746 3btz:A (3.0) BS01 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129747 3btz:A (3.0) BS02 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129748 3bu0:A (2.5) BS01 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129749 3bu0:A (2.5) BS02 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129750 3bu0:A (2.5) BS03 AKG 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129751 3bu0:A (2.5) BS04 MN 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129752 3bu1:A (1.4) BS01 HSM ? GO:0030682 ... Q09JX9 18445596 MOAD: Kd=7.1nM
    129753 3bu3:A (1.65) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 18278056
    129754 3bu4:A (1.77) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    129755 3bu5:A (2.1) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 18278056
    129756 3bu5:A (2.1) BS02 MG 2.7.10.1 GO:0004672 ... P06213 18278056
    129757 3bu5:A (2.1) BS03 ATP 2.7.10.1 GO:0004672 ... P06213 18278056
    129758 3bu6:A (1.95) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 18278056
    129759 3bu7:A (2.8) BS01 FE2 1.13.11.4 GO:0016491 ... Q5LLB1 18505738
    129760 3bu7:A (2.8) BS02 FE2 1.13.11.4 GO:0016491 ... Q5LLB1 18505738
    129761 3bu7:B (2.8) BS01 FE2 1.13.11.4 GO:0016491 ... Q5LLB1 18505738
    129762 3bu7:B (2.8) BS02 FE2 1.13.11.4 GO:0016491 ... Q5LLB1 18505738
    129763 3bu8:A (2.15) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129764 3bu8:B (2.15) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129765 3bua:A (2.5) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129766 3bua:A (2.5) BS02 peptide ? GO:0000723 ... Q15554 18202258
    129767 3bua:B (2.5) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129768 3bua:C (2.5) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129769 3bua:D (2.5) BS01 peptide ? GO:0000723 ... Q15554 18202258
    129770 3bua:D (2.5) BS02 peptide ? GO:0000723 ... Q15554 18202258
    129771 3bub:A (1.38) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129772 3buc:A (2.59) BS01 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129773 3buc:A (2.59) BS02 dna 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129774 3buc:A (2.59) BS03 MN 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129775 3buc:A (2.59) BS04 AKG 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    129776 3bud:A (1.85) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129777 3buf:A (2.3) BS01 AEG 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=800uM
    129778 3bug:A (2.5) BS01 AEH 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=660uM
    BindingDB: Kd=660000nM
    129779 3buh:A (2.3) BS01 AED 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=220uM
    BindingDB: Kd=220000nM
    129780 3bui:A (1.25) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129781 3buj:A (2.47) BS01 HEM ? GO:0004497 ... Q8KND6 18561189
    129782 3bul:A (2.3) BS01 B12 2.1.1.13 GO:0008705 ... P13009 18332423
    129783 3bum:B (2.0) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 18273061
    129784 3bun:B (2.0) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 18273061
    129785 3buo:B (2.6) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 18273061
    129786 3buo:D (2.6) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 18273061
    129787 3bup:A (2.03) BS01 MAN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129788 3bup:A (2.03) BS02 ZN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129789 3buq:A (2.01) BS01 MAN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129790 3buq:A (2.01) BS02 ZN 3.2.1.114 GO:0000139 ... Q24451 18558690
    129791 3bur:A (1.62) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    129792 3bur:A (1.62) BS02 TES 1.3.1.3 GO:0004032 ... P51857 18407998 MOAD: Ki=14.45uM
    129793 3bur:B (1.62) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    129794 3bur:B (1.62) BS02 TES 1.3.1.3 GO:0004032 ... P51857 18407998 MOAD: Ki=14.45uM
    129795 3bus:A (2.65) BS01 SAH 2.1.1.164 GO:0008757 ... Q8KZ94 18502766
    129796 3bus:B (2.65) BS01 SAH 2.1.1.164 GO:0008757 ... Q8KZ94 18502766
    129797 3buv:A (1.35) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    129798 3buv:A (1.35) BS02 EPE 1.3.1.3 GO:0004032 ... P51857 18407998
    129799 3buv:B (1.35) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    129800 3buw:B (1.45) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 18273061

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).