SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140601 3fdm:C (2.26) BS02 peptide ? GO:0042981 ... Q07817 19229915
    140602 3fdn:A (1.9) BS01 MMH 2.7.11.1 GO:0000212 ... O14965 19140666 MOAD: ic50=0.033uM
    140603 3fdo:A (1.4) BS01 peptide ? GO:0005634 ... O15151 19305137
    140604 3fdo:A (1.4) BS02 MG ? GO:0005634 ... O15151 19305137
    140605 3fdo:A (1.4) BS03 MG ? GO:0005634 ... O15151 19305137
    140606 3fdq:A (1.75) BS01 dna ? N/A P0DJO8 19446532
    140607 3fdq:A (1.75) BS02 dna ? N/A P0DJO8 19446532
    140608 3fdq:B (1.75) BS01 dna ? N/A P0DJO8 19446532
    140609 3fdq:B (1.75) BS02 dna ? N/A P0DJO8 19446532
    140610 3fdt:A (2.0) BS01 peptide ? N/A P45973 21047797
    140611 3fdx:A (1.58) BS01 ATP ? N/A A6T8F5 N/A
    140612 3fdx:B (1.58) BS01 ATP ? N/A A6T8F5 N/A
    140613 3fdy:A (1.55) BS01 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 19291706
    140614 3fdz:A (2.25) BS01 DG2 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    140615 3fe1:A (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    140616 3fe1:B (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    140617 3fe1:C (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    140618 3fe2:A (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... P17844 20941364
    140619 3fe2:B (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... P17844 20941364
    140620 3fe4:A (1.9) BS01 MG 4.2.1.1 GO:0001580 ... P23280 22366092
    140621 3fe4:B (1.9) BS01 MG 4.2.1.1 GO:0001580 ... P23280 22366092
    140622 3fe5:A (2.51) BS01 FE 1.13.11.6 GO:0000334 ... Q0VCA8 19226621
    140623 3fe7:A (1.35) BS01 peptide ? GO:0005634 ... O15151 19153082
    140624 3fea:A (1.33) BS01 peptide ? GO:0005634 ... O15151 19153082
    140625 3fea:A (1.33) BS02 peptide ? GO:0005634 ... O15151 19153082
    140626 3fec:A (1.49) BS01 GLU 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140627 3fec:A (1.49) BS02 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140628 3fec:A (1.49) BS03 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140629 3fec:A (1.49) BS04 CA 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140630 3fed:A (1.29) BS01 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140631 3fed:A (1.29) BS02 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140632 3fed:A (1.29) BS03 CA 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140633 3fed:A (1.29) BS04 BIX 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840 MOAD: Ki=34.6nM
    140634 3fee:A (1.56) BS01 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140635 3fee:A (1.56) BS02 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140636 3fee:A (1.56) BS03 CA 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140637 3fee:A (1.56) BS04 QUS 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840 MOAD: Ki=230nM
    140638 3fef:A (2.2) BS01 MG 3.2.1.67 GO:0003824 ... P39130 N/A
    140639 3fef:B (2.2) BS01 MG 3.2.1.67 GO:0003824 ... P39130 N/A
    140640 3fef:C (2.2) BS01 MG 3.2.1.67 GO:0003824 ... P39130 N/A
    140641 3fef:D (2.2) BS01 MG 3.2.1.67 GO:0003824 ... P39130 N/A
    140642 3feg:A (1.302) BS01 HC7 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    140643 3feg:A (1.302) BS02 ADP 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    140644 3feg:A (1.302) BS03 AMP 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    140645 3feg:A (1.302) BS04 MG 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    140646 3feh:A (1.9) BS01 ZN ? GO:0005096 ... O75689 21057110
    140647 3fei:A (2.4) BS01 peptide ? GO:0003677 ... Q07869 19326383
    140648 3fei:A (2.4) BS02 CTM ? GO:0003677 ... Q07869 19326383 MOAD: ic50=0.02uM
    140649 3fej:A (2.01) BS01 peptide ? GO:0003677 ... P37231 19326383
    140650 3fej:A (2.01) BS02 CTM ? GO:0003677 ... P37231 19326383 MOAD: ic50=0.74uM
    140651 3fep:A (2.6) BS01 LMC ? GO:0001972 ... P29373 25534273
    140652 3feq:A (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140653 3feq:A (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140654 3feq:B (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140655 3feq:B (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140656 3feq:C (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140657 3feq:C (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140658 3feq:D (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140659 3feq:D (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140660 3feq:E (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140661 3feq:E (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140662 3feq:F (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140663 3feq:F (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140664 3feq:G (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140665 3feq:G (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140666 3feq:H (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140667 3feq:H (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140668 3feq:I (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140669 3feq:J (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140670 3feq:J (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140671 3feq:K (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140672 3feq:K (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140673 3feq:L (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140674 3feq:L (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140675 3feq:M (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140676 3feq:M (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140677 3feq:N (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140678 3feq:O (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140679 3feq:O (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140680 3feq:P (2.63) BS01 ZN ? GO:0016787 ... Q393A1 20604542
    140681 3feq:P (2.63) BS02 ZN ? GO:0016787 ... Q393A1 20604542
    140682 3fes:B (1.82) BS01 MG ? N/A Q18CA9 N/A
    140683 3feu:A (1.758) BS01 MG ? N/A Q5E0B9 N/A
    140684 3ff1:B (1.65) BS01 G6Q 5.3.1.9 GO:0004347 ... Q5HHC2 N/A
    140685 3ff3:A (1.37) BS01 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140686 3ff3:A (1.37) BS02 ZN 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140687 3ff3:A (1.37) BS03 CA 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140688 3ff3:A (1.37) BS04 GLU 3.4.17.21 GO:0004180 ... Q9Y3Q0 19678840
    140689 3ff5:A (1.8) BS01 DPW ? GO:0005778 ... Q642G4 19122147
    140690 3ff5:B (1.8) BS01 DPW ? GO:0005778 ... Q642G4 19122147
    140691 3ff6:A (3.19) BS01 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140692 3ff6:A (3.19) BS02 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140693 3ff6:B (3.19) BS01 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140694 3ff6:B (3.19) BS02 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140695 3ff6:C (3.19) BS01 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140696 3ff6:C (3.19) BS02 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140697 3ff6:D (3.19) BS01 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140698 3ff6:D (3.19) BS02 RCP 6.4.1.2 GO:0003989 ... O00763 19390150 BindingDB: IC50=38nM
    140699 3ff8:A (2.0) BS01 CA ? GO:0005509 ... P12830 19604491
    140700 3ff8:A (2.0) BS02 CA ? GO:0005509 ... P12830 19604491
    140701 3ff8:B (2.0) BS01 CA ? GO:0005509 ... P12830 19604491
    140702 3ffa:A (2.3) BS01 GSP ? GO:0000287 ... P10824 19703466 MOAD: Kd=0.69uM
    140703 3ffa:A (2.3) BS02 MG ? GO:0000287 ... P10824 19703466
    140704 3ffb:A (2.57) BS01 GDP ? GO:0000287 ... P10824 19703466
    140705 3ffc:A (2.8) BS01 peptide ? N/A P01889 19167249
    140706 3ffc:E (2.8) BS01 peptide ? N/A P01850 19167249
    140707 3ffc:F (2.8) BS01 peptide ? N/A P01889 19167249
    140708 3ffc:J (2.8) BS01 peptide ? N/A P01850 19167249
    140709 3ffd:A (2.0) BS01 peptide N/A N/A N/A 19346515
    140710 3ffd:B (2.0) BS01 peptide N/A N/A N/A 19346515
    140711 3ffg:A (1.54) BS01 FFG 3.4.21.6 GO:0004252 ... P00742 20100660 MOAD: Ki=0.84nM
    BindingDB: Ki=0.84nM
    140712 3ffi:A (2.6) BS01 3OB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 N/A
    140713 3ffk:A (3.0) BS01 CA ? GO:0051015 ... P06396 19666512
    140714 3ffk:A (3.0) BS02 CA ? GO:0051015 ... P06396 19666512
    140715 3ffk:A (3.0) BS03 CA ? GO:0051015 ... P06396 19666512
    140716 3ffk:A (3.0) BS04 CA ? GO:0051015 ... P06396 19666512
    140717 3ffk:B (3.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19666512
    140718 3ffk:D (3.0) BS01 CA ? GO:0051015 ... P06396 19666512
    140719 3ffk:D (3.0) BS02 CA ? GO:0051015 ... P06396 19666512
    140720 3ffk:D (3.0) BS03 CA ? GO:0051015 ... P06396 19666512
    140721 3ffk:D (3.0) BS04 CA ? GO:0051015 ... P06396 19666512
    140722 3ffk:E (3.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19666512
    140723 3ffo:A (2.1) BS01 BMA ? GO:0009289 ... Q47200 24833052
    140724 3ffo:A (2.1) BS02 SO4 ? GO:0009289 ... Q47200 24833052
    140725 3ffp:X (1.81) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19186056
    140726 3ffp:X (1.81) BS02 LC1 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19186056 MOAD: Ki=72.5nM
    BindingDB: Ki=72.5nM
    140727 3ffr:A (1.75) BS01 SER N/A GO:0004648 ... N/A N/A
    140728 3fft:A (2.21) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140729 3fft:A (2.21) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140730 3fft:B (2.21) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140731 3fft:B (2.21) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140732 3ffu:A (2.8) BS01 GTP 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140733 3ffu:A (2.8) BS02 MG 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140734 3ffu:A (2.8) BS03 MG 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140735 3ffu:B (2.8) BS01 GTP 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140736 3ffu:B (2.8) BS02 MG 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140737 3ffu:B (2.8) BS03 MG 3.6.1.55 GO:0006281 ... Q6MPX4 19278661
    140738 3ffw:A (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140739 3ffw:A (2.0) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140740 3ffw:B (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140741 3ffw:B (2.0) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140742 3ffx:A (2.01) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140743 3ffx:A (2.01) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140744 3ffx:B (2.01) BS01 MN ? GO:0000156 ... P0AE67 19646451
    140745 3ffx:B (2.01) BS02 BEF ? GO:0000156 ... P0AE67 19646451
    140746 3ffz:A (2.65) BS01 ZN 3.4.24.69 GO:0004222 ... Q00496 19118561
    140747 3ffz:B (2.65) BS01 ZN 3.4.24.69 GO:0004222 ... Q00496 19118561
    140748 3fg1:A (1.85) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140749 3fg1:A (1.85) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140750 3fg1:B (1.85) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140751 3fg1:B (1.85) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140752 3fg1:C (1.85) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140753 3fg1:C (1.85) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140754 3fg1:D (1.85) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140755 3fg1:D (1.85) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140756 3fg2:P (2.2) BS01 FAD 1.18.1.3 GO:0005737 ... Q6N3B2 19626710
    140757 3fg3:A (1.9) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140758 3fg3:A (1.9) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140759 3fg3:B (1.9) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140760 3fg3:B (1.9) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140761 3fg3:C (1.9) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140762 3fg3:C (1.9) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140763 3fg3:D (1.9) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140764 3fg3:D (1.9) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140765 3fg4:A (2.31) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140766 3fg4:A (2.31) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140767 3fg4:B (2.31) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140768 3fg4:B (2.31) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140769 3fg4:B (2.31) BS03 ACD 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140770 3fg4:C (2.31) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140771 3fg4:C (2.31) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140772 3fg4:D (2.31) BS01 FE2 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140773 3fg4:D (2.31) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 19594169
    140774 3fg5:A (2.5) BS01 peptide N/A GO:0004623 ... N/A N/A
    140775 3fg5:A (2.5) BS02 AJM N/A GO:0004623 ... N/A N/A
    140776 3fg6:A (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140777 3fg6:A (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140778 3fg6:A (3.0) BS03 CA ? GO:0051015 ... Q9Y6U3 19666531
    140779 3fg6:B (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140780 3fg6:B (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140781 3fg6:C (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140782 3fg6:C (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140783 3fg6:D (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140784 3fg6:D (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140785 3fg6:D (3.0) BS03 CA ? GO:0051015 ... Q9Y6U3 19666531
    140786 3fg6:E (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140787 3fg6:E (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140788 3fg6:E (3.0) BS03 CA ? GO:0051015 ... Q9Y6U3 19666531
    140789 3fg6:F (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140790 3fg6:F (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140791 3fg6:G (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140792 3fg6:G (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140793 3fg6:G (3.0) BS03 CA ? GO:0051015 ... Q9Y6U3 19666531
    140794 3fg6:G (3.0) BS04 CA ? GO:0051015 ... Q9Y6U3 19666531
    140795 3fg6:H (3.0) BS01 CA ? GO:0051015 ... Q9Y6U3 19666531
    140796 3fg6:H (3.0) BS02 CA ? GO:0051015 ... Q9Y6U3 19666531
    140797 3fg6:H (3.0) BS03 CA ? GO:0051015 ... Q9Y6U3 19666531
    140798 3fg8:A (1.8) BS01 3PB ? N/A Q0S7I6 N/A
    140799 3fg8:B (1.8) BS01 3PB ? N/A Q0S7I6 N/A
    140800 3fg8:C (1.8) BS01 3PB ? N/A Q0S7I6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).