SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    141401 3fo2:L (2.18) BS01 BZH N/A N/A N/A 19846764
    141402 3fo3:A (1.4) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141403 3fo3:A (1.4) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141404 3fo3:A (1.4) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141405 3fo3:A (1.4) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141406 3fo3:A (1.4) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141407 3fo3:A (1.4) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141408 3fo3:A (1.4) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141409 3fo3:A (1.4) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141410 3fo3:A (1.4) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141411 3fo3:A (1.4) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141412 3fo3:A (1.4) BS11 CA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141413 3fo3:B (1.4) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141414 3fo3:B (1.4) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141415 3fo3:B (1.4) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141416 3fo3:B (1.4) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141417 3fo3:B (1.4) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141418 3fo3:B (1.4) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141419 3fo3:B (1.4) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141420 3fo3:B (1.4) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141421 3fo3:B (1.4) BS09 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141422 3fo3:B (1.4) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141423 3fo3:B (1.4) BS11 CA 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141424 3fo3:B (1.4) BS12 SO3 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    141425 3fo5:A (2.0) BS01 TCE 3.1.2.-
    3.1.2.2
    GO:0008289 ... Q8WXI4 21738568
    141426 3fo7:A (1.4) BS01 IMN 3.1.1.4 GO:0004623 ... P59071 19462410
    141427 3fo9:A (1.9) BS01 DIK N/A N/A N/A 19968282
    141428 3fo9:B (1.9) BS01 DIK ? N/A P01865 19968282
    141429 3fo9:H (1.9) BS01 DIK ? N/A P01865 19968282
    141430 3fo9:L (1.9) BS01 DIK N/A N/A N/A 19968282
    141431 3foe:A (4.001) BS01 dna 5.6.2.2 GO:0003677 ... P72525 19448616
    141432 3foe:B (4.001) BS01 dna 5.6.2.2 GO:0003677 ... P72525 19448616
    141433 3foe:B (4.001) BS02 NFX 5.6.2.2 GO:0003677 ... P72525 19448616
    141434 3foe:C (4.001) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141435 3foe:D (4.001) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141436 3fof:A (4.0) BS01 dna 5.6.2.2 GO:0003677 ... P72525 19448616
    141437 3fof:A (4.0) BS02 MFX 5.6.2.2 GO:0003677 ... P72525 19448616
    141438 3fof:B (4.0) BS01 dna 5.6.2.2 GO:0003677 ... P72525 19448616
    141439 3fof:B (4.0) BS02 MFX 5.6.2.2 GO:0003677 ... P72525 19448616
    141440 3fof:C (4.0) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141441 3fof:C (4.0) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141442 3fof:D (4.0) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141443 3fof:D (4.0) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 19448616
    141444 3fol:A (2.5) BS01 peptide ? GO:0016020 ... D2YW38 20093428
    141445 3fom:A (2.1) BS01 peptide ? GO:0016020 ... D2YW38 20093428
    141446 3fon:A (2.03) BS01 peptide ? GO:0016020 ... D2YW38 20093428
    141447 3fon:C (2.03) BS01 peptide ? GO:0016020 ... D2YW38 20093428
    141448 3foo:A (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141449 3foo:A (2.4) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141450 3foo:A (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141451 3foo:B (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141452 3foo:B (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141453 3foo:B (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141454 3foo:C (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141455 3foo:C (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141456 3foo:C (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141457 3foo:D (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141458 3foo:D (2.4) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141459 3foo:D (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141460 3foo:E (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141461 3foo:E (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141462 3foo:E (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141463 3foo:F (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141464 3foo:F (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141465 3foo:F (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141466 3foo:G (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141467 3foo:G (2.4) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141468 3foo:G (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141469 3foo:H (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141470 3foo:H (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141471 3foo:H (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141472 3foo:I (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141473 3foo:I (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141474 3foo:I (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141475 3foo:J (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141476 3foo:J (2.4) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141477 3foo:J (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141478 3foo:K (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141479 3foo:K (2.4) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141480 3foo:K (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141481 3foo:L (2.4) BS01 PXX ? GO:0005506 ... P0ABE7 19527025
    141482 3foo:L (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    141483 3foo:L (2.4) BS03 PXX ? GO:0005506 ... P0ABE7 19527025
    141484 3fop:A (3.0) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141485 3fop:A (3.0) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141486 3fop:A (3.0) BS03 NI ? GO:0005506 ... P0ABE7 19527025
    141487 3fop:B (3.0) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    141488 3fop:B (3.0) BS02 PXX ? GO:0005506 ... P0ABE7 19527025
    141489 3fop:B (3.0) BS03 NI ? GO:0005506 ... P0ABE7 19527025
    141490 3foq:A (3.41) BS01 SO4 2.3.1.157
    2.7.7.23
    GO:0000287 ... P9WMN3 19407371
    141491 3for:A (1.93) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    141492 3for:A (1.93) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    141493 3for:A (1.93) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    141494 3for:A (1.93) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    141495 3for:A (1.93) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    141496 3for:A (1.93) BS06 ZNP 3.4.24.27 GO:0004222 ... P00800 N/A
    141497 3fou:A (2.1) BS01 FES ? GO:0016020 ... Q5SGZ9 19772300
    141498 3fou:B (2.1) BS01 FES ? GO:0016020 ... Q5SGZ9 19772300
    141499 3fow:A (2.8) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 24416224
    141500 3fow:B (2.8) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 24416224
    141501 3foz:A (2.5) BS01 rna 2.5.1.75 GO:0005524 ... P16384 19158097
    141502 3foz:B (2.5) BS01 rna 2.5.1.75 GO:0005524 ... P16384 19158097
    141503 3foz:B (2.5) BS02 rna 2.5.1.75 GO:0005524 ... P16384 19158097
    141504 3foz:B (2.5) BS03 CA 2.5.1.75 GO:0005524 ... P16384 19158097
    141505 3fp0:A (1.9) BS01 GLC 2.3.2.- GO:0016407 ... Q9C1B7 19319932
    141506 3fp0:A (1.9) BS02 Z9N 2.3.2.- GO:0016407 ... Q9C1B7 19319932
    141507 3fp0:A (1.9) BS03 FP0 2.3.2.- GO:0016407 ... Q9C1B7 19319932
    141508 3fp2:A (1.98) BS01 peptide ? N/A P38825 19581297
    141509 3fp2:A (1.98) BS02 MG ? N/A P38825 19581297
    141510 3fp4:A (2.14) BS01 peptide ? N/A P38825 19581297
    141511 3fp5:A (1.61) BS01 ZN ? GO:0000062 ... D1MPT1 19782157
    141512 3fp6:E (1.49) BS01 CA 3.4.21.4 GO:0004252 ... P00763 19549826
    141513 3fp7:E (1.46) BS01 peptide 3.4.21.4 GO:0004252 ... P00763 19549826
    141514 3fp7:E (1.46) BS02 CA 3.4.21.4 GO:0004252 ... P00763 19549826
    141515 3fp7:J (1.46) BS01 peptide ? GO:0004867 ... P00974 19549826
    141516 3fp8:E (1.46) BS01 CA 3.4.21.4 GO:0004252 ... P00763 19549826
    141517 3fpa:A (2.3) BS01 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141518 3fpa:A (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141519 3fpa:A (2.3) BS03 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141520 3fpa:B (2.3) BS01 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141521 3fpa:B (2.3) BS02 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141522 3fpa:B (2.3) BS03 MG 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141523 3fpa:C (2.3) BS01 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141524 3fpa:C (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141525 3fpa:D (2.3) BS01 DTB 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141526 3fpa:D (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 20565114
    141527 3fpb:A (2.55) BS01 MG 7.2.2.10 GO:0000166 ... P04191 19289472
    141528 3fpb:A (2.55) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 19289472
    141529 3fpb:A (2.55) BS03 K 7.2.2.10 GO:0000166 ... P04191 19289472
    141530 3fpb:A (2.55) BS04 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    141531 3fpb:A (2.55) BS05 ATP 7.2.2.10 GO:0000166 ... P04191 19289472
    141532 3fpc:A (1.4) BS01 ZN 1.1.1.80 GO:0008270 ... P14941
    P35630
    20102159
    141533 3fpc:B (1.4) BS01 ZN 1.1.1.80 GO:0008270 ... P14941
    P35630
    20102159
    141534 3fpc:C (1.4) BS01 ZN 1.1.1.80 GO:0008270 ... P14941
    P35630
    20102159
    141535 3fpc:D (1.4) BS01 ZN 1.1.1.80 GO:0008270 ... P14941
    P35630
    20102159
    141536 3fpd:A (2.4) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047 BindingDB: IC50=230nM
    141537 3fpd:A (2.4) BS02 Q4A 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047 MOAD: ic50=0.7uM
    BindingDB: IC50=700nM
    141538 3fpd:A (2.4) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141539 3fpd:A (2.4) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141540 3fpd:A (2.4) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141541 3fpd:A (2.4) BS06 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141542 3fpd:B (2.4) BS01 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047 BindingDB: IC50=230nM
    141543 3fpd:B (2.4) BS02 Q4A 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047 MOAD: ic50=0.7uM
    BindingDB: IC50=700nM
    141544 3fpd:B (2.4) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141545 3fpd:B (2.4) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141546 3fpd:B (2.4) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141547 3fpd:B (2.4) BS06 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 19219047
    141548 3fpe:A (1.7) BS01 TNA ? GO:0030410 ... O26771 19805277
    141549 3fpe:B (1.7) BS01 TNA ? GO:0030410 ... O26771 19805277
    141550 3fpf:A (1.66) BS01 TNA ? GO:0030410 ... O26771 19805277
    141551 3fpf:A (1.66) BS02 MTA ? GO:0030410 ... O26771 19805277
    141552 3fpf:B (1.66) BS01 TNA ? GO:0030410 ... O26771 19805277
    141553 3fpf:B (1.66) BS02 MTA ? GO:0030410 ... O26771 19805277
    141554 3fph:A (1.8) BS01 GLU ? GO:0030410 ... O26771 19805277
    141555 3fph:B (1.8) BS01 GLU ? GO:0030410 ... O26771 19805277
    141556 3fpi:A (2.8) BS01 CTP 4.6.1.12 GO:0008685 ... Q8ZBP7 N/A
    141557 3fpi:A (2.8) BS02 MG 4.6.1.12 GO:0008685 ... Q8ZBP7 N/A
    141558 3fpj:A (1.8) BS01 SAM ? GO:0030410 ... O26771 19805277
    141559 3fpj:B (1.8) BS01 SAM ? GO:0030410 ... O26771 19805277
    141560 3fpk:A (1.7) BS01 FAD 1.18.1.2
    1.19.1.1
    GO:0004324 ... Q8ZKP5 N/A
    141561 3fpk:B (1.7) BS01 FAD 1.18.1.2
    1.19.1.1
    GO:0004324 ... Q8ZKP5 N/A
    141562 3fpl:A (1.9) BS01 ZN 1.1.1.80 GO:0008270 ... P14941
    P25984
    20102159
    141563 3fpm:A (3.3) BS01 793 2.7.11.1 GO:0004672 ... P49137 19364658 BindingDB: IC50=8900nM
    141564 3fps:A (3.2) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 19289472
    141565 3fps:A (3.2) BS02 ADP 7.2.2.10 GO:0000166 ... P04191 19289472
    141566 3fpv:A (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141567 3fpv:B (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141568 3fpv:C (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141569 3fpv:D (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141570 3fpv:E (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141571 3fpv:F (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141572 3fpv:G (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141573 3fpv:H (2.2) BS01 FE ? N/A Q9RIM2 19244623
    141574 3fpx:A (1.8) BS01 MAN 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    141575 3fpx:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    141576 3fpx:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    141577 3fpx:A (1.8) BS04 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    141578 3fpx:A (1.8) BS05 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    141579 3fpy:A (2.1) BS01 CU ? GO:0005507 ... P00282 20305734
    141580 3fpz:A (1.82) BS01 AHZ 2.4.2.60 GO:0005506 ... P32318 22031445
    141581 3fpz:B (1.82) BS01 AHZ 2.4.2.60 GO:0005506 ... P32318 22031445
    141582 3fq0:A (1.69) BS01 NDP N/A GO:0004146 ... N/A 19249312
    141583 3fq0:A (1.69) BS02 N22 N/A GO:0004146 ... N/A 19249312 MOAD: ic50=0.068uM
    141584 3fq1:A (1.9) BS01 CU ? GO:0005507 ... P00282 20305734
    141585 3fq2:A (1.91) BS01 CU ? GO:0005507 ... P00282 20305734
    141586 3fq7:A (2.15) BS01 PXG 5.4.3.8 GO:0005737 ... P24630 19786580
    141587 3fq7:A (2.15) BS02 PXG 5.4.3.8 GO:0005737 ... P24630 19786580
    141588 3fq7:B (2.15) BS01 PXG 5.4.3.8 GO:0005737 ... P24630 19786580
    141589 3fq7:B (2.15) BS02 PXG 5.4.3.8 GO:0005737 ... P24630 19786580
    141590 3fq8:A (2.0) BS01 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141591 3fq8:A (2.0) BS02 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141592 3fq8:B (2.0) BS01 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141593 3fq8:B (2.0) BS02 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141594 3fq9:B (1.35) BS01 peptide ? GO:0005179 ... P01308 19773552
    141595 3fq9:D (1.35) BS01 peptide ? GO:0005179 ... P01308 19773552
    141596 3fqa:A (2.35) BS01 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141597 3fqa:A (2.35) BS02 GAB 5.4.3.8 GO:0005737 ... P24630 19786580
    141598 3fqa:B (2.35) BS01 PMP 5.4.3.8 GO:0005737 ... P24630 19786580
    141599 3fqa:B (2.35) BS02 GAB 5.4.3.8 GO:0005737 ... P24630 19786580
    141600 3fqa:B (2.35) BS03 PMP 5.4.3.8 GO:0005737 ... P24630 19786580

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).