SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    150401 3igz:B (1.9) BS03 2PG 5.4.2.12 GO:0003824 ... Q86N96 19781556
    150402 3ih0:A (1.9) BS01 ANP 2.7.1.- GO:0006000 ... O59128 N/A
    150403 3ih7:A (3.1) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 N/A
    150404 3ih7:A (3.1) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 N/A
    150405 3iha:A (2.6) BS01 GLU 3.5.1.2 GO:0004359 ... Q4U1A6 20050917
    150406 3iha:B (2.6) BS01 GLU 3.5.1.2 GO:0004359 ... Q4U1A6 20050917
    150407 3ihb:A (2.4) BS01 GLU 3.5.1.2 GO:0004359 ... Q4U1A6 20050917
    150408 3ihb:B (2.4) BS01 GLU 3.5.1.2 GO:0004359 ... Q4U1A6 20050917
    150409 3ihg:A (2.49) BS01 FAD 1.14.13.180 GO:0016491 ... Q54530 19744497
    150410 3ihg:A (2.49) BS02 VAK 1.14.13.180 GO:0016491 ... Q54530 19744497
    150411 3ihg:B (2.49) BS01 FAD 1.14.13.180 GO:0016491 ... Q54530 19744497
    150412 3ihg:B (2.49) BS02 VAK 1.14.13.180 GO:0016491 ... Q54530 19744497
    150413 3ihg:C (2.49) BS01 FAD 1.14.13.180 GO:0016491 ... Q54530 19744497
    150414 3ihg:C (2.49) BS02 VAK 1.14.13.180 GO:0016491 ... Q54530 19744497
    150415 3ihj:A (2.3) BS01 PLP 2.6.1.2 GO:0004021 ... Q8TD30 N/A
    150416 3ihk:A (3.0) BS01 TPP 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150417 3ihk:A (3.0) BS02 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150418 3ihk:A (3.0) BS03 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150419 3ihk:B (3.0) BS01 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150420 3ihk:B (3.0) BS02 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150421 3ihk:B (3.0) BS03 TPP 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150422 3ihk:B (3.0) BS04 TPP 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150423 3ihk:C (3.0) BS01 TPP 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150424 3ihk:C (3.0) BS02 TPP 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150425 3ihk:C (3.0) BS03 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    150426 3ihl:A (2.8) BS01 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 N/A
    150427 3ihl:B (2.8) BS01 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 N/A
    150428 3ihp:A (2.8) BS01 ZN 3.4.19.12 GO:0002841 ... P45974 N/A
    150429 3ihp:A (2.8) BS02 NEH 3.4.19.12 GO:0002841 ... P45974 N/A
    150430 3ihp:B (2.8) BS01 ZN 3.4.19.12 GO:0002841 ... P45974 N/A
    150431 3ihp:B (2.8) BS02 NEH 3.4.19.12 GO:0002841 ... P45974 N/A
    150432 3iht:A (1.8) BS01 SAM ? N/A Q5LVY3 N/A
    150433 3ihz:A (1.67) BS01 FK5 5.2.1.8 GO:0003755 ... A5K8X6 20572013 MOAD: ic50=160nM
    150434 3ihz:B (1.67) BS01 FK5 5.2.1.8 GO:0003755 ... A5K8X6 20572013
    150435 3ii0:A (2.05) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 N/A
    150436 3ii0:B (2.05) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 N/A
    150437 3ii0:C (2.05) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 N/A
    150438 3ii0:D (2.05) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 N/A
    150439 3ii1:A (2.25) BS01 BGC 3.2.1.4 N/A A0ACD6B8D8 20043877
    150440 3ii1:A (2.25) BS02 ZN 3.2.1.4 N/A A0ACD6B8D8 20043877
    150441 3ii1:A (2.25) BS03 ZN 3.2.1.4 N/A A0ACD6B8D8 20043877
    150442 3ii4:A (2.42) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 20078138
    150443 3ii4:A (2.42) BS02 3II 1.8.1.4 GO:0004148 ... P9WHH9 20078138 MOAD: Ki=865nM
    150444 3ii4:B (2.42) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 20078138
    150445 3ii4:B (2.42) BS02 3II 1.8.1.4 GO:0004148 ... P9WHH9 20078138 MOAD: Ki=865nM
    150446 3ii5:A (2.79) BS01 831 2.7.11.1 GO:0004672 ... P15056 19864136 BindingDB: IC50=24nM
    150447 3ii5:B (2.79) BS01 831 2.7.11.1 GO:0004672 ... P15056 19864136 BindingDB: IC50=24nM
    150448 3iib:A (1.7) BS01 ZN ? GO:0005576 ... A1S420 N/A
    150449 3iib:A (1.7) BS02 ZN ? GO:0005576 ... A1S420 N/A
    150450 3iid:A (1.9) BS01 APR ? N/A O75367 19680243
    150451 3iie:A (2.21) BS01 MG 1.1.1.267 GO:0008299 ... B1JQG4 N/A
    150452 3iie:B (2.21) BS01 MG 1.1.1.267 GO:0008299 ... B1JQG4 N/A
    150453 3iif:A (2.1) BS01 APR ? N/A O75367 19680243
    150454 3iif:B (2.1) BS01 APR ? N/A O75367 19680243
    150455 3iif:C (2.1) BS01 APR ? N/A O75367 19680243
    150456 3iij:A (1.76) BS01 ADP 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150457 3iij:A (1.76) BS02 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150458 3iik:A (1.95) BS01 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150459 3iik:A (1.95) BS02 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150460 3iik:A (1.95) BS03 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150461 3iik:A (1.95) BS04 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150462 3iil:A (2.0) BS01 ADP 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150463 3iil:A (2.0) BS02 MG 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150464 3iil:A (2.0) BS03 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150465 3iim:A (2.0) BS01 DAT 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150466 3iim:A (2.0) BS02 SO4 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    150467 3iin:A (4.18) BS01 rna ? GO:0003676 ... P09012 20145044
    150468 3iiq:A (2.0) BS01 peptide 3.4.21.89 GO:0004252 ... P00803 19655811
    150469 3iiq:A (2.0) BS02 JZA 3.4.21.89 GO:0004252 ... P00803 19655811 MOAD: ic50=610uM
    150470 3iiq:B (2.0) BS01 peptide 3.4.21.89 GO:0004252 ... P00803 19655811
    150471 3iiq:B (2.0) BS02 JZA 3.4.21.89 GO:0004252 ... P00803 19655811 MOAD: ic50=610uM
    150472 3iiq:B (2.0) BS03 TRT 3.4.21.89 GO:0004252 ... P00803 19655811
    150473 3iis:M (1.4) BS01 CLA ? GO:0016168 ... P80484 19934052
    150474 3iis:M (1.4) BS02 PID ? GO:0016168 ... P80484 19934052
    150475 3iis:M (1.4) BS03 PID ? GO:0016168 ... P80484 19934052
    150476 3iis:M (1.4) BS04 PID ? GO:0016168 ... P80484 19934052
    150477 3iis:M (1.4) BS05 PID ? GO:0016168 ... P80484 19934052
    150478 3iis:M (1.4) BS06 J7Z ? GO:0016168 ... P80484 19934052
    150479 3iit:A (1.8) BS01 CA 3.4.21.6 GO:0004252 ... P00742 19900814
    150480 3iit:A (1.8) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19900814
    150481 3iit:A (1.8) BS03 D14 3.4.21.6 GO:0004252 ... P00742 19900814 MOAD: ic50=9.5nM
    BindingDB: IC50=9.5nM
    150482 3iiu:M (1.45) BS01 CLA ? GO:0016168 ... P80484 19934052
    150483 3iiu:M (1.45) BS02 PID ? GO:0016168 ... P80484 19934052
    150484 3iiu:M (1.45) BS03 PID ? GO:0016168 ... P80484 19934052
    150485 3iiu:M (1.45) BS04 PID ? GO:0016168 ... P80484 19934052
    150486 3iiu:M (1.45) BS05 PID ? GO:0016168 ... P80484 19934052
    150487 3iiu:M (1.45) BS06 J7Z ? GO:0016168 ... P80484 19934052
    150488 3iiv:B (1.8) BS01 MG N/A GO:0000105 ... N/A 20036254
    150489 3iiw:A (1.8) BS01 peptide ? N/A O75530 19767730
    150490 3iix:A (1.25) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150491 3iix:A (1.25) BS02 MET 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150492 3iix:A (1.25) BS03 S3H 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150493 3iiy:A (2.65) BS01 peptide ? N/A O75530 19767730
    150494 3iiz:A (1.62) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150495 3iiz:A (1.62) BS02 SAM 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150496 3iiz:A (1.62) BS03 FES 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    150497 3ij0:A (2.45) BS01 peptide ? N/A O75530 19767730
    150498 3ij1:A (2.1) BS01 peptide ? N/A O75530 19767730
    150499 3ij6:A (2.0) BS01 ZN 4.1.1.52 GO:0005737 ... Q5FK79 N/A
    150500 3ij6:B (2.0) BS01 ZN 4.1.1.52 GO:0005737 ... Q5FK79 N/A
    150501 3ij6:C (2.0) BS01 ZN 4.1.1.52 GO:0005737 ... Q5FK79 N/A
    150502 3ij6:D (2.0) BS01 ZN 4.1.1.52 GO:0005737 ... Q5FK79 N/A
    150503 3ij7:A (2.0) BS01 B9D 3.2.1.1 GO:0003824 ... P04746 19803533
    150504 3ij7:A (2.0) BS02 BGC 3.2.1.1 GO:0003824 ... P04746 19803533
    150505 3ij7:A (2.0) BS03 GLF 3.2.1.1 GO:0003824 ... P04746 19803533
    150506 3ij7:A (2.0) BS04 B8D 3.2.1.1 GO:0003824 ... P04746 19803533
    150507 3ij7:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 19803533
    150508 3ij8:A (1.43) BS01 B0D 3.2.1.1 GO:0003824 ... P04746 19803533
    150509 3ij8:A (1.43) BS02 B0D 3.2.1.1 GO:0003824 ... P04746 19803533
    150510 3ij8:A (1.43) BS03 B0D 3.2.1.1 GO:0003824 ... P04746 19803533
    150511 3ij8:A (1.43) BS04 B9D 3.2.1.1 GO:0003824 ... P04746 19803533
    150512 3ij8:A (1.43) BS05 CA 3.2.1.1 GO:0003824 ... P04746 19803533
    150513 3ij9:A (1.85) BS01 B9D 3.2.1.1 GO:0003824 ... P04746 19803533
    150514 3ij9:A (1.85) BS02 BGC 3.2.1.1 GO:0003824 ... P04746 19803533
    150515 3ij9:A (1.85) BS03 B0D 3.2.1.1 GO:0003824 ... P04746 19803533
    150516 3ij9:A (1.85) BS04 B0D 3.2.1.1 GO:0003824 ... P04746 19803533
    150517 3ij9:A (1.85) BS05 CA 3.2.1.1 GO:0003824 ... P04746 19803533
    150518 3ijc:A (1.95) BS01 NDS ? N/A O75530 19767730
    150519 3ijd:A (2.0) BS01 C2F ? GO:0004489 ... A3DHS7 N/A
    150520 3ijd:A (2.0) BS02 C2F ? GO:0004489 ... A3DHS7 N/A
    150521 3ijd:B (2.0) BS01 C2F ? GO:0004489 ... A3DHS7 N/A
    150522 3ijd:B (2.0) BS02 C2F ? GO:0004489 ... A3DHS7 N/A
    150523 3ije:A (2.9) BS01 CA ? GO:0001525 ... P06756 19704023
    150524 3ije:A (2.9) BS02 CA ? GO:0001525 ... P06756 19704023
    150525 3ije:A (2.9) BS03 CA ? GO:0001525 ... P06756 19704023
    150526 3ije:A (2.9) BS04 CA ? GO:0001525 ... P06756 19704023
    150527 3ije:A (2.9) BS05 CA ? GO:0001525 ... P06756 19704023
    150528 3ije:B (2.9) BS01 CA ? GO:0001525 ... P05106 19704023
    150529 3ijf:X (1.99) BS01 ZN 3.5.4.5 GO:0004126 ... P9WPH3 20035876
    150530 3ijg:C (1.7) BS01 AVR 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506 MOAD: Kd=54uM
    150531 3ijh:A (2.1) BS01 KO2 N/A N/A N/A 19767317
    150532 3ijh:B (2.1) BS01 KO2 N/A N/A N/A 19767317 MOAD: Kd=100uM
    150533 3ijh:C (2.1) BS01 KO2 N/A N/A N/A 19767317 MOAD: Kd=100uM
    150534 3ijh:D (2.1) BS01 KO2 N/A N/A N/A 19767317
    150535 3iji:A (1.6) BS01 ALA 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150536 3iji:A (1.6) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150537 3iji:A (1.6) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150538 3iji:B (1.6) BS01 ALA 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150539 3iji:B (1.6) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150540 3iji:B (1.6) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150541 3ijj:A (1.25) BS01 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150542 3ijj:A (1.25) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150543 3ijj:A (1.25) BS03 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150544 3ijj:A (1.25) BS04 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150545 3ijj:B (1.25) BS01 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150546 3ijj:B (1.25) BS02 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150547 3ijj:B (1.25) BS03 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150548 3ijj:C (1.25) BS01 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150549 3ijj:C (1.25) BS02 EN1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150550 3ijj:C (1.25) BS03 ENO 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150551 3ijj:C (1.25) BS04 AVR 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 20534506
    150552 3ijl:A (1.5) BS01 PRO 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150553 3ijl:A (1.5) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150554 3ijl:A (1.5) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150555 3ijl:B (1.5) BS01 PRO 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150556 3ijl:B (1.5) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150557 3ijl:B (1.5) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150558 3ijo:B (2.003) BS01 GLU ? GO:0015276 ... P19491 19673491
    150559 3ijo:B (2.003) BS02 B4D ? GO:0015276 ... P19491 19673491
    150560 3ijo:B (2.003) BS03 B4D ? GO:0015276 ... P19491 19673491
    150561 3ijo:B (2.003) BS04 ZN ? GO:0015276 ... P19491 19673491
    150562 3ijo:E (2.003) BS01 B4D ? GO:0015276 ... P19491 19673491
    150563 3ijo:E (2.003) BS02 B4D ? GO:0015276 ... P19491 19673491
    150564 3ijo:E (2.003) BS03 GLU ? GO:0015276 ... P19491 19673491
    150565 3ijo:E (2.003) BS04 ZN ? GO:0015276 ... P19491 19673491
    150566 3ijo:H (2.003) BS01 GLU ? GO:0015276 ... P19491 19673491
    150567 3ijo:H (2.003) BS02 B4D ? GO:0015276 ... P19491 19673491
    150568 3ijo:H (2.003) BS03 ZN ? GO:0015276 ... P19491 19673491
    150569 3ijp:A (2.3) BS01 NA 1.17.1.8 GO:0005737 ... Q6G2G3 27917836
    150570 3ijp:A (2.3) BS02 NAP 1.17.1.8 GO:0005737 ... Q6G2G3 27917836
    150571 3ijp:B (2.3) BS01 NA 1.17.1.8 GO:0005737 ... Q6G2G3 27917836
    150572 3ijq:A (2.0) BS01 ALA 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150573 3ijq:A (2.0) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150574 3ijq:A (2.0) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150575 3ijq:B (2.0) BS01 ALA 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150576 3ijq:B (2.0) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150577 3ijq:B (2.0) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    150578 3ijr:A (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150579 3ijr:A (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150580 3ijr:B (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150581 3ijr:B (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150582 3ijr:C (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150583 3ijr:C (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150584 3ijr:D (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150585 3ijr:D (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150586 3ijr:E (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150587 3ijr:E (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150588 3ijr:F (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150589 3ijr:F (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150590 3ijr:G (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150591 3ijr:G (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150592 3ijr:H (2.05) BS01 NAD ? GO:0008206 ... A0A6L8PL20 N/A
    150593 3ijr:H (2.05) BS02 MG ? GO:0008206 ... A0A6L8PL20 N/A
    150594 3ijs:A (2.55) BS01 KDO N/A N/A N/A 19767317
    150595 3ijs:B (2.55) BS01 KDO N/A N/A N/A 19767317
    150596 3ijs:C (2.55) BS01 KDO N/A N/A N/A 19767317
    150597 3ijs:D (2.55) BS01 KDO N/A N/A N/A 19767317
    150598 3ijw:A (1.9) BS01 ACO 2.3.1.81 GO:0008080 ... A0A3P1UCA6 21601576
    150599 3ijw:B (1.9) BS01 ACO 2.3.1.81 GO:0008080 ... A0A3P1UCA6 21601576
    150600 3ijx:B (2.881) BS01 GLU ? GO:0015276 ... P19491 19673491

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).