SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15601 1g4t:B (1.55) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15602 1g4u:R (2.3) BS01 MG 3.6.5.2 GO:0000242 ... P63000 11163217
    15603 1g4u:R (2.3) BS02 GDP 3.6.5.2 GO:0000242 ... P63000 11163217
    15604 1g4u:R (2.3) BS03 AF3 3.6.5.2 GO:0000242 ... P63000 11163217
    15605 1g4u:S (2.3) BS01 GDP 3.1.3.48 GO:0004725 ... P74873 11163217
    15606 1g4v:A (2.0) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    15607 1g4x:A (2.2) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 11148029
    15608 1g4y:R (1.6) BS01 CA ? GO:0000785 ... P0DP29 11323678
    15609 1g4y:R (1.6) BS02 CA ? GO:0000785 ... P0DP29 11323678
    15610 1g50:A (2.9) BS01 EST ? N/A P03372 11437591 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    15611 1g50:B (2.9) BS01 EST ? N/A P03372 11437591 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    15612 1g50:C (2.9) BS01 EST ? N/A P03372 11437591 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    15613 1g51:A (2.4) BS01 AMO 6.1.1.12 GO:0000166 ... P36419 7966328
    15614 1g51:B (2.4) BS01 AMO 6.1.1.12 GO:0000166 ... P36419 7966328
    15615 1g51:B (2.4) BS02 AMP 6.1.1.12 GO:0000166 ... P36419 7966328
    15616 1g52:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    15617 1g52:A (1.8) BS02 F2B 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A MOAD: Kd=0.29nM
    15618 1g53:A (1.94) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    15619 1g53:A (1.94) BS02 F6B 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A MOAD: Kd=0.91nM
    15620 1g54:A (1.86) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    15621 1g54:A (1.86) BS02 FFB 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A MOAD: Kd=1.5nM
    15622 1g55:A (1.8) BS01 SAH 2.1.1.204 GO:0008168 ... O14717 11139614
    15623 1g58:A (1.55) BS01 AU 4.1.99.12 GO:0000287 ... P0A7J0 11342130
    15624 1g59:A (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 11224561
    15625 1g59:C (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 11224561
    15626 1g5b:A (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15627 1g5b:A (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15628 1g5b:A (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    15629 1g5b:B (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15630 1g5b:B (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15631 1g5b:B (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    15632 1g5b:B (2.15) BS04 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    15633 1g5b:C (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15634 1g5b:C (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    15635 1g5b:C (2.15) BS03 SO4 3.1.3.16 GO:0004721 ... P03772 11112522
    15636 1g5c:A (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15637 1g5c:A (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15638 1g5c:B (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15639 1g5c:B (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15640 1g5c:C (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15641 1g5c:C (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15642 1g5c:D (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15643 1g5c:D (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15644 1g5c:E (2.1) BS01 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15645 1g5c:E (2.1) BS02 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15646 1g5c:F (2.1) BS01 EPE 4.2.1.1 GO:0004089 ... Q50565 11096105
    15647 1g5c:F (2.1) BS02 ZN 4.2.1.1 GO:0004089 ... Q50565 11096105
    15648 1g5c:F (2.1) BS03 CA 4.2.1.1 GO:0004089 ... Q50565 11096105
    15649 1g5f:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    15650 1g5f:A (1.8) BS02 DCE 3.8.1.5 GO:0003824 ... D4Z2G1 11939779 MOAD: Ki=2.31mM
    15651 1g5j:A (-1.00) BS01 peptide ? GO:0042981 ... Q07817 11206074
    15652 1g5n:A (1.9) BS01 SGN ? GO:0001786 ... P14668 11342135
    15653 1g5n:A (1.9) BS02 UAP ? GO:0001786 ... P14668 11342135
    15654 1g5n:A (1.9) BS03 SGN ? GO:0001786 ... P14668 11342135
    15655 1g5n:A (1.9) BS04 IDS ? GO:0001786 ... P14668 11342135
    15656 1g5n:A (1.9) BS05 SGN ? GO:0001786 ... P14668 11342135
    15657 1g5n:A (1.9) BS06 UAP ? GO:0001786 ... P14668 11342135
    15658 1g5n:A (1.9) BS07 CA ? GO:0001786 ... P14668 11342135
    15659 1g5n:A (1.9) BS08 CA ? GO:0001786 ... P14668 11342135
    15660 1g5n:A (1.9) BS09 CA ? GO:0001786 ... P14668 11342135
    15661 1g5n:A (1.9) BS10 CA ? GO:0001786 ... P14668 11342135
    15662 1g5n:A (1.9) BS11 CA ? GO:0001786 ... P14668 11342135
    15663 1g5n:A (1.9) BS12 CA ? GO:0001786 ... P14668 11342135
    15664 1g5n:A (1.9) BS13 CA ? GO:0001786 ... P14668 11342135
    15665 1g5n:A (1.9) BS14 CA ? GO:0001786 ... P14668 11342135
    15666 1g5n:A (1.9) BS15 CA ? GO:0001786 ... P14668 11342135
    15667 1g5p:A (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    15668 1g5p:B (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    15669 1g5q:A (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15670 1g5q:A (2.57) BS02 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15671 1g5q:A (2.57) BS03 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15672 1g5q:D (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15673 1g5q:D (2.57) BS02 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15674 1g5q:D (2.57) BS03 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15675 1g5q:G (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15676 1g5q:G (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15677 1g5q:L (2.57) BS01 peptide 4.1.1.- GO:0003824 ... P30197 11101502
    15678 1g5q:L (2.57) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15679 1g5s:A (2.61) BS01 I17 2.7.11.22 GO:0000082 ... P24941 11170642 BindingDB: IC50=48nM
    15680 1g5t:A (1.8) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    15681 1g5t:A (1.8) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    15682 1g5y:B (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    15683 1g5y:C (2.0) BS01 REA ? GO:0003677 ... P19793 10970886
    15684 1g60:A (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    15685 1g60:B (1.74) BS01 SAM 2.1.1.72 GO:0003676 ... P23192 12954781
    15686 1g63:A (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15687 1g63:A (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15688 1g63:B (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15689 1g63:B (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15690 1g63:C (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15691 1g63:C (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15692 1g63:D (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15693 1g63:D (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15694 1g63:E (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15695 1g63:E (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15696 1g63:F (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15697 1g63:F (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15698 1g63:G (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15699 1g63:G (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15700 1g63:H (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15701 1g63:H (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15702 1g63:I (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15703 1g63:I (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15704 1g63:J (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15705 1g63:J (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15706 1g63:K (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15707 1g63:K (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15708 1g63:L (2.5) BS01 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15709 1g63:L (2.5) BS02 FMN 4.1.1.- GO:0003824 ... P30197 11101502
    15710 1g64:A (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    15711 1g64:A (2.1) BS02 B12 2.5.1.17 GO:0005524 ... P31570 11148030
    15712 1g64:A (2.1) BS03 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    15713 1g64:B (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    15714 1g64:B (2.1) BS02 ATP 2.5.1.17 GO:0005524 ... P31570 11148030
    15715 1g65:G (2.25) BS01 MG 3.4.25.1 GO:0003674 ... P21243 N/A
    15716 1g65:H (2.25) BS01 MG 3.4.25.1 GO:0004298 ... P25043 N/A
    15717 1g65:I (2.25) BS01 MG 3.4.25.1 GO:0005515 ... P25451 N/A
    15718 1g65:K (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    15719 1g65:K (2.25) BS02 MG 3.4.25.1 GO:0004298 ... P30656 N/A
    15720 1g65:L (2.25) BS01 peptide 3.4.25.1 GO:0003674 ... P23724 N/A
    15721 1g65:L (2.25) BS02 MG 3.4.25.1 GO:0003674 ... P23724 N/A
    15722 1g65:L (2.25) BS03 MG 3.4.25.1 GO:0003674 ... P23724 N/A
    15723 1g65:N (2.25) BS01 MG 3.4.25.1 GO:0004175 ... P38624 N/A
    15724 1g65:Y (2.25) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 N/A
    15725 1g65:Z (2.25) BS01 peptide 3.4.25.1 GO:0003674 ... P23724 N/A
    15726 1g66:A (0.9) BS01 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    15727 1g66:A (0.9) BS02 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    15728 1g66:A (0.9) BS03 SO4 3.1.1.72 GO:0005576 ... O59893 11134051
    15729 1g67:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15730 1g67:A (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    15731 1g67:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15732 1g67:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15733 1g67:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15734 1g67:B (1.4) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    15735 1g67:B (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15736 1g67:B (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15737 1g69:A (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15738 1g69:A (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    15739 1g69:A (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15740 1g69:A (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15741 1g69:B (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15742 1g69:B (1.5) BS02 ICP 2.5.1.3 GO:0000287 ... P39594 11513589
    15743 1g69:B (1.5) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15744 1g69:B (1.5) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15745 1g6b:A (1.9) BS01 SF4 ? GO:0009055 ... P00214 11704670
    15746 1g6b:A (1.9) BS02 F3S ? GO:0009055 ... P00214 11704670
    15747 1g6c:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15748 1g6c:A (1.4) BS02 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    15749 1g6c:A (1.4) BS03 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15750 1g6c:A (1.4) BS04 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15751 1g6c:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15752 1g6c:B (1.4) BS02 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    15753 1g6c:B (1.4) BS03 IFP 2.5.1.3 GO:0000287 ... P39594 11513589
    15754 1g6c:B (1.4) BS04 POP 2.5.1.3 GO:0000287 ... P39594 11513589
    15755 1g6c:B (1.4) BS05 TZP 2.5.1.3 GO:0000287 ... P39594 11513589
    15756 1g6g:A (1.6) BS01 peptide 2.7.12.1 N/A P22216 11106755
    15757 1g6g:B (1.6) BS01 peptide 2.7.12.1 N/A P22216 11106755
    15758 1g6h:A (1.6) BS01 ADP ? GO:0005524 ... Q58663 11470432
    15759 1g6i:A (1.59) BS01 DMJ 3.2.1.113 GO:0004559 ... P32906 N/A
    15760 1g6k:A (2.0) BS01 NAD 1.1.1.47 GO:0047934 ... P40288 N/A
    15761 1g6k:B (2.0) BS01 NAD 1.1.1.47 GO:0047934 ... P40288 N/A
    15762 1g6k:E (2.0) BS01 NAD 1.1.1.47 GO:0047934 ... P40288 N/A
    15763 1g6k:F (2.0) BS01 NAD 1.1.1.47 GO:0047934 ... P40288 N/A
    15764 1g6n:A (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    15765 1g6n:B (2.1) BS01 CMP ? GO:0003677 ... P0ACJ8 11124031
    15766 1g6o:A (2.5) BS01 ADP ? GO:0005515 ... Q7BK04 11163218
    15767 1g6o:B (2.5) BS01 ADP ? GO:0005515 ... Q7BK04 11163218
    15768 1g6r:A (2.8) BS01 peptide ? GO:0002250 ... P01738 10755612
    15769 1g6r:B (2.8) BS01 peptide ? N/A P01852 10755612
    15770 1g6r:D (2.8) BS01 peptide ? N/A P01852 10755612
    15771 1g6r:H (2.8) BS01 peptide ? N/A P01901 10755612
    15772 1g6r:I (2.8) BS01 peptide ? N/A P01901 10755612
    15773 1g6s:A (1.5) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 BindingDB: Kd=7000nM
    15774 1g6s:A (1.5) BS02 GPJ 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    15775 1g6t:A (1.6) BS01 PO4 2.5.1.19 GO:0003824 ... P0A6D3 11171958
    15776 1g6t:A (1.6) BS02 S3P 2.5.1.19 GO:0003824 ... P0A6D3 11171958 BindingDB: Kd=7000nM
    15777 1g6u:A (1.48) BS01 TFA N/A N/A N/A 11171963
    15778 1g6u:B (1.48) BS01 TFA N/A N/A N/A 11171963
    15779 1g6v:A (3.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 11342547
    15780 1g71:A (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    15781 1g71:B (2.3) BS01 ZN 2.7.7.- GO:0000428 ... Q9P9H1 11135672
    15782 1g72:A (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    15783 1g72:A (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    15784 1g72:C (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    15785 1g72:C (1.9) BS02 PQQ 1.1.2.7 GO:0005509 ... P38539 11149955
    15786 1g73:C (2.0) BS01 ZN 2.3.2.27 N/A P98170 11140638
    15787 1g73:D (2.0) BS01 ZN 2.3.2.27 N/A P98170 11140638
    15788 1g74:A (1.7) BS01 OLA ? GO:0005324 ... P04117 14594993 MOAD: Kd=0.3uM
    15789 1g76:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15790 1g76:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15791 1g76:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15792 1g77:A (2.1) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15793 1g77:A (2.1) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15794 1g77:A (2.1) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15795 1g78:A (2.2) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15796 1g78:A (2.2) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15797 1g78:A (2.2) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15798 1g78:A (2.2) BS04 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15799 1g79:A (2.0) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11453690
    15800 1g79:A (2.0) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11453690

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).