SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    158601 3kft:A (2.1) BS01 FMN ? GO:0005829 ... P71278 19891489
    158602 3kft:A (2.1) BS02 NAD ? GO:0005829 ... P71278 19891489
    158603 3kft:A (2.1) BS03 NAD ? GO:0005829 ... P71278 19891489
    158604 3kft:B (2.1) BS01 FMN ? GO:0005829 ... P71278 19891489
    158605 3kft:B (2.1) BS02 NAD ? GO:0005829 ... P71278 19891489
    158606 3kfu:A (3.0) BS01 rna 6.1.1.23 GO:0000166 ... Q5SIC2 20717102
    158607 3kfu:B (3.0) BS01 rna 6.1.1.23 GO:0000166 ... Q5SIC2 20717102
    158608 3kfu:C (3.0) BS01 rna 6.1.1.23 GO:0000166 ... Q5SIC2 20717102
    158609 3kfu:D (3.0) BS01 rna 6.1.1.23 GO:0000166 ... Q5SIC2 20717102
    158610 3kfu:E (3.0) BS01 rna 6.3.5.7 GO:0003824 ... Q9LCX3 20717102
    158611 3kfu:F (3.0) BS01 rna 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158612 3kfu:F (3.0) BS02 rna 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158613 3kfu:F (3.0) BS03 ZN 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158614 3kfu:F (3.0) BS04 MG 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158615 3kfu:H (3.0) BS01 rna 6.3.5.7 GO:0003824 ... Q9LCX3 20717102
    158616 3kfu:I (3.0) BS01 rna 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158617 3kfu:I (3.0) BS02 rna 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158618 3kfu:I (3.0) BS03 ZN 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158619 3kfu:I (3.0) BS04 MG 6.3.5.- GO:0003824 ... Q9LCX2 20717102
    158620 3kfx:A (1.96) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    158621 3kfx:A (1.96) BS02 MCY 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    158622 3kfx:B (1.96) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    158623 3kfx:B (1.96) BS02 MCY 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    158624 3kfy:A (2.08) BS01 NDP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    158625 3kfy:A (2.08) BS02 JZM 1.5.1.3 GO:0004146 ... P0ABQ4 N/A BindingDB: Ki=38nM
    158626 3kfy:A (2.08) BS03 CA 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    158627 3kg2:A (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    158628 3kg2:B (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    158629 3kg2:C (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    158630 3kg2:D (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    158631 3kg6:A (2.7) BS01 CA 1.1.1.35 N/A Q6DNE7 20152156
    158632 3kga:A (2.55) BS01 MG 2.7.11.1 GO:0004672 ... P49137 20060294
    158633 3kga:A (2.55) BS02 LX9 2.7.11.1 GO:0004672 ... P49137 20060294 BindingDB: IC50=61nM
    158634 3kgc:A (1.55) BS01 GLU ? GO:0015276 ... P19491 19946266
    158635 3kgc:A (1.55) BS02 LY7 ? GO:0015276 ... P19491 19946266
    158636 3kgc:B (1.55) BS01 LY7 ? GO:0015276 ... P19491 19946266
    158637 3kgc:B (1.55) BS02 ZK1 ? GO:0015276 ... P19491 19946266
    158638 3kgd:A (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    158639 3kgd:A (1.68) BS02 SO4 6.5.1.4 GO:0003824 ... P46849 20399182
    158640 3kgd:B (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    158641 3kgd:B (1.68) BS02 SO4 6.5.1.4 GO:0003824 ... P46849 20399182
    158642 3kgd:B (1.68) BS03 SO4 6.5.1.4 GO:0003824 ... P46849 20399182
    158643 3kgd:C (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    158644 3kgd:C (1.68) BS02 SO4 6.5.1.4 GO:0003824 ... P46849 20399182
    158645 3kgd:D (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    158646 3kgf:A (2.0) BS01 PHE 2.5.1.54 GO:0003849 ... O53512 20667835
    158647 3kgf:A (2.0) BS02 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    158648 3kgf:A (2.0) BS03 PO4 2.5.1.54 GO:0003849 ... O53512 20667835
    158649 3kgf:A (2.0) BS04 PO4 2.5.1.54 GO:0003849 ... O53512 20667835
    158650 3kgf:A (2.0) BS05 MN 2.5.1.54 GO:0003849 ... O53512 20667835
    158651 3kgf:B (2.0) BS01 PHE 2.5.1.54 GO:0003849 ... O53512 20667835
    158652 3kgf:B (2.0) BS02 PHE 2.5.1.54 GO:0003849 ... O53512 20667835
    158653 3kgf:B (2.0) BS03 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    158654 3kgf:B (2.0) BS04 PO4 2.5.1.54 GO:0003849 ... O53512 20667835
    158655 3kgf:B (2.0) BS05 MN 2.5.1.54 GO:0003849 ... O53512 20667835
    158656 3kgf:B (2.0) BS06 PHE 2.5.1.54 GO:0003849 ... O53512 20667835
    158657 3kgg:A (2.1) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20383004
    158658 3kgg:A (2.1) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20383004
    158659 3kgp:A (2.35) BS01 4AZ 3.4.21.73 GO:0004252 ... P00749 N/A
    158660 3kgq:A (1.7) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 21804935
    158661 3kgr:A (1.8) BS01 GLY ? N/A Q6GTX8 20007810
    158662 3kgr:B (1.8) BS01 GLY ? N/A Q6GTX8 20007810
    158663 3kgt:A (1.95) BS01 GEN ? GO:0001523 ... P02766 20211733 MOAD: Kd=3.1uM
    158664 3kgt:B (1.95) BS01 GEN ? GO:0001523 ... P02766 20211733 MOAD: Kd=3.1uM
    158665 3kgu:A (1.85) BS01 GEN ? GO:0001523 ... P02766 20211733 MOAD: Kd=1.2uM
    158666 3kgu:B (1.85) BS01 GEN ? GO:0001523 ... P02766 20211733 MOAD: Kd=1.2uM
    158667 3kgw:A (1.65) BS01 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... O35423 N/A
    158668 3kgw:B (1.65) BS01 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... O35423 N/A
    158669 3kgx:A (1.8) BS01 MG 2.6.1.44
    2.6.1.51
    GO:0004760 ... O35423 N/A
    158670 3kgy:A (1.5) BS01 NDP ? GO:0008703 ... A9WHX7 N/A
    158671 3kgy:B (1.5) BS01 NDP ? GO:0008703 ... A9WHX7 N/A
    158672 3kgz:A (1.85) BS01 MN N/A N/A N/A N/A
    158673 3kgz:B (1.85) BS01 MN N/A N/A N/A N/A
    158674 3kh1:A (1.37) BS01 CA ? GO:0002953 ... D1MPT5 N/A
    158675 3kh3:A (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158676 3kh3:A (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158677 3kh3:B (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158678 3kh3:B (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158679 3kh3:C (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158680 3kh3:C (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158681 3kh3:D (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158682 3kh3:D (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158683 3kh3:E (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158684 3kh3:E (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158685 3kh3:F (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158686 3kh3:F (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158687 3kh3:G (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158688 3kh3:G (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158689 3kh3:H (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158690 3kh3:H (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158691 3kh3:I (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158692 3kh3:I (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158693 3kh3:J (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158694 3kh3:J (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158695 3kh3:K (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158696 3kh3:K (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158697 3kh3:L (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158698 3kh3:L (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158699 3kh4:A (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158700 3kh4:A (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158701 3kh4:B (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158702 3kh4:B (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158703 3kh4:C (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158704 3kh4:C (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158705 3kh4:D (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158706 3kh4:D (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158707 3kh4:E (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158708 3kh4:E (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158709 3kh4:F (3.5) BS01 CU 1.15.1.1 GO:0000303 ... P00441 20693657
    158710 3kh4:F (3.5) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 20693657
    158711 3kh5:A (2.1) BS01 ADP 1.1.1.34 N/A Q58622 20382158
    158712 3kh5:A (2.1) BS02 AMP 1.1.1.34 N/A Q58622 20382158
    158713 3kh5:A (2.1) BS03 ADP 1.1.1.34 N/A Q58622 20382158
    158714 3kh5:A (2.1) BS04 ADP 1.1.1.34 N/A Q58622 20382158
    158715 3kh5:A (2.1) BS05 AMP 1.1.1.34 N/A Q58622 20382158
    158716 3khb:A (2.9) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    158717 3khb:A (2.9) BS02 AKG 1.14.11.33 GO:0005515 ... P05050 20084272
    158718 3khb:B (2.9) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    158719 3khb:B (2.9) BS02 AKG 1.14.11.33 GO:0005515 ... P05050 20084272
    158720 3khc:A (2.2) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    158721 3khc:A (2.2) BS02 AKG 1.14.11.33 GO:0005515 ... P05050 20084272
    158722 3khc:B (2.2) BS01 dna 1.14.11.33 GO:0005515 ... P05050 20084272
    158723 3khc:B (2.2) BS02 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    158724 3khc:B (2.2) BS03 AKG 1.14.11.33 GO:0005515 ... P05050 20084272
    158725 3khe:A (1.95) BS01 CA ? GO:0005509 ... Q3HNM6 21287613
    158726 3khe:A (1.95) BS02 CA ? GO:0005509 ... Q3HNM6 21287613
    158727 3khe:A (1.95) BS03 CA ? GO:0005509 ... Q3HNM6 21287613
    158728 3khe:A (1.95) BS04 CA ? GO:0005509 ... Q3HNM6 21287613
    158729 3khe:A (1.95) BS05 MG ? GO:0005509 ... Q3HNM6 21287613
    158730 3khe:B (1.95) BS01 CA ? GO:0005509 ... Q3HNM6 21287613
    158731 3khe:B (1.95) BS02 CA ? GO:0005509 ... Q3HNM6 21287613
    158732 3khe:B (1.95) BS03 CA ? GO:0005509 ... Q3HNM6 21287613
    158733 3khe:B (1.95) BS04 CA ? GO:0005509 ... Q3HNM6 21287613
    158734 3khe:B (1.95) BS05 MG ? GO:0005509 ... Q3HNM6 21287613
    158735 3khe:B (1.95) BS06 MG ? GO:0005509 ... Q3HNM6 21287613
    158736 3khg:A (2.96) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158737 3khg:A (2.96) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158738 3khg:A (2.96) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158739 3khg:A (2.96) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158740 3khg:A (2.96) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158741 3khg:A (2.96) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158742 3khg:B (2.96) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158743 3khg:B (2.96) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158744 3khg:B (2.96) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158745 3khg:B (2.96) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158746 3khg:B (2.96) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158747 3khg:B (2.96) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158748 3khh:A (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158749 3khh:A (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158750 3khh:A (2.7) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158751 3khh:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158752 3khh:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158753 3khh:A (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158754 3khh:A (2.7) BS07 AF 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158755 3khh:B (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158756 3khh:B (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158757 3khh:B (2.7) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158758 3khh:B (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158759 3khh:B (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158760 3khh:B (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158761 3khh:B (2.7) BS07 AF 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158762 3khi:A (1.95) BS01 ZN 3.4.11.- GO:0004177 ... A6TB83 22467785
    158763 3khj:A (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158764 3khj:A (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158765 3khj:B (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158766 3khj:B (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158767 3khj:C (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158768 3khj:C (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158769 3khj:D (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158770 3khj:D (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158771 3khj:E (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158772 3khj:F (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158773 3khj:G (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158774 3khj:G (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158775 3khj:H (2.8) BS01 IMP 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158776 3khj:H (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976
    158777 3khl:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158778 3khl:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158779 3khl:A (2.1) BS03 TTP 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158780 3khl:A (2.1) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158781 3khl:A (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158782 3khl:A (2.1) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158783 3khl:A (2.1) BS07 AF 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158784 3khl:B (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158785 3khl:B (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158786 3khl:B (2.1) BS03 TTP 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158787 3khl:B (2.1) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158788 3khl:B (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158789 3khl:B (2.1) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158790 3khl:B (2.1) BS07 AF 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158791 3khm:A (2.85) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488
    158792 3khm:A (2.85) BS02 TPF 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488 BindingDB: IC50=880nM, Kd=2.3e+2nM
    158793 3khr:A (2.01) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158794 3khr:A (2.01) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158795 3khr:A (2.01) BS03 TTP 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158796 3khr:A (2.01) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158797 3khr:A (2.01) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158798 3khr:A (2.01) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158799 3khr:A (2.01) BS07 AF 2.7.7.7 GO:0000287 ... Q97W02 20154704
    158800 3khr:B (2.01) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 20154704

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).