SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160001 3krp:D (2.42) BS01 GPP 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    160002 3krp:D (2.42) BS02 MG 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    160003 3krp:D (2.42) BS03 MG 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    160004 3krq:A (2.25) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 20461536
    160005 3krq:A (2.25) BS02 CA 1.11.1.7 GO:0004601 ... P80025 20461536
    160006 3krq:A (2.25) BS03 3TR 1.11.1.7 GO:0004601 ... P80025 20461536 MOAD: Kd=0.55uM
    160007 3krq:A (2.25) BS04 3TR 1.11.1.7 GO:0004601 ... P80025 20461536 MOAD: Kd=0.55uM
    160008 3krr:A (1.8) BS01 DQX 2.7.10.2 GO:0004672 ... O60674 20587663 MOAD: ic50=0.48nM
    BindingDB: Kd=42000nM, IC50=7.3nM
    160009 3kru:A (1.6) BS01 FMN 1.6.99.1 GO:0003959 ... B0KAH1 19943268
    160010 3kru:B (1.6) BS01 FMN 1.6.99.1 GO:0003959 ... B0KAH1 19943268
    160011 3kru:C (1.6) BS01 FMN 1.6.99.1 GO:0003959 ... B0KAH1 19943268
    160012 3kru:D (1.6) BS01 FMN 1.6.99.1 GO:0003959 ... B0KAH1 19943268
    160013 3krv:B (2.55) BS01 ZN ? GO:0004061 ... P84132 N/A
    160014 3krw:A (2.9) BS01 BA1 2.7.11.15 GO:0001664 ... P25098 20128603 BindingDB: IC50=42nM
    160015 3krw:A (2.9) BS02 MG 2.7.11.15 GO:0001664 ... P25098 20128603
    160016 3krx:A (3.1) BS01 BA1 2.7.11.15 GO:0001664 ... P25098 20128603 BindingDB: IC50=42nM
    160017 3krx:A (3.1) BS02 MG 2.7.11.15 GO:0001664 ... P25098 20128603
    160018 3kry:A (1.9) BS01 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160019 3kry:A (1.9) BS02 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160020 3kry:A (1.9) BS03 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160021 3kry:A (1.9) BS04 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160022 3kry:A (1.9) BS05 3KR 3.4.24.- GO:0004222 ... P45452 20726512 MOAD: ic50=0.1nM
    160023 3kry:B (1.9) BS01 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160024 3kry:B (1.9) BS02 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160025 3kry:B (1.9) BS03 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160026 3kry:B (1.9) BS04 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160027 3kry:B (1.9) BS05 3KR 3.4.24.- GO:0004222 ... P45452 20726512 MOAD: ic50=0.1nM
    160028 3kry:C (1.9) BS01 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160029 3kry:C (1.9) BS02 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160030 3kry:C (1.9) BS03 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160031 3kry:C (1.9) BS04 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160032 3kry:C (1.9) BS05 3KR 3.4.24.- GO:0004222 ... P45452 20726512 MOAD: ic50=0.1nM
    160033 3kry:D (1.9) BS01 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160034 3kry:D (1.9) BS02 ZN 3.4.24.- GO:0004222 ... P45452 20726512
    160035 3kry:D (1.9) BS03 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160036 3kry:D (1.9) BS04 CA 3.4.24.- GO:0004222 ... P45452 20726512
    160037 3kry:D (1.9) BS05 3KR 3.4.24.- GO:0004222 ... P45452 20726512 MOAD: ic50=0.1nM
    160038 3krz:A (1.8) BS01 FMN ? GO:0003959 ... B0KAH1 19943268
    160039 3krz:A (1.8) BS02 TXD ? GO:0003959 ... B0KAH1 19943268
    160040 3krz:B (1.8) BS01 FMN ? GO:0003959 ... B0KAH1 19943268
    160041 3krz:B (1.8) BS02 TXD ? GO:0003959 ... B0KAH1 19943268
    160042 3krz:C (1.8) BS01 FMN ? GO:0003959 ... B0KAH1 19943268
    160043 3krz:C (1.8) BS02 TXD ? GO:0003959 ... B0KAH1 19943268
    160044 3krz:D (1.8) BS01 FMN ? GO:0003959 ... B0KAH1 19943268
    160045 3krz:D (1.8) BS02 TXD ? GO:0003959 ... B0KAH1 19943268
    160046 3ks0:A (2.7) BS01 HEM 1.1.2.3 GO:0020037 ... P00175 20546754
    160047 3ks0:B (2.7) BS01 HEM 1.1.2.3 GO:0020037 ... P00175 20546754
    160048 3ks0:H (2.7) BS01 HEM N/A N/A N/A 20546754
    160049 3ks0:K (2.7) BS01 HEM N/A N/A N/A 20546754
    160050 3ks3:A (0.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20000378
    160051 3ks5:A (2.05) BS01 FE ? GO:0006629 ... A9CLR1 N/A
    160052 3ks5:B (2.05) BS01 FE ? GO:0006629 ... A9CLR1 N/A
    160053 3ks6:A (1.8) BS01 MG ? GO:0006629 ... A9CLR1 N/A
    160054 3ks6:B (1.8) BS01 MG ? GO:0006629 ... A9CLR1 N/A
    160055 3ks6:C (1.8) BS01 MG ? GO:0006629 ... A9CLR1 N/A
    160056 3ks6:D (1.8) BS01 MG ? GO:0006629 ... A9CLR1 N/A
    160057 3ks8:A (2.401) BS01 rna ? N/A Q8JPY0 20018665
    160058 3ks8:B (2.401) BS01 rna ? N/A Q8JPY0 20018665
    160059 3ks8:B (2.401) BS02 rna ? N/A Q8JPY0 20018665
    160060 3ks8:C (2.401) BS01 rna ? N/A Q8JPY0 20018665
    160061 3ks8:C (2.401) BS02 rna ? N/A Q8JPY0 20018665
    160062 3ks8:D (2.401) BS01 rna ? N/A Q8JPY0 20018665
    160063 3ks8:D (2.401) BS02 rna ? N/A Q8JPY0 20018665
    160064 3ks9:A (1.9) BS01 Z99 ? GO:0004930 ... Q13255 N/A BindingDB: IC50=7800nM, Ki=6800nM
    160065 3ks9:A (1.9) BS02 MG ? GO:0004930 ... Q13255 N/A
    160066 3ks9:B (1.9) BS01 Z99 ? GO:0004930 ... Q13255 N/A BindingDB: IC50=7800nM, Ki=6800nM
    160067 3ks9:B (1.9) BS02 MG ? GO:0004930 ... Q13255 N/A
    160068 3ksa:A (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160069 3ksa:A (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160070 3ksa:B (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160071 3ksa:B (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160072 3ksa:C (3.3) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160073 3ksa:C (3.3) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160074 3ksa:C (3.3) BS03 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160075 3ksa:C (3.3) BS04 MG 5.6.2.2 GO:0003677 ... Q59961 20596531
    160076 3ksa:D (3.3) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160077 3ksa:D (3.3) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160078 3ksa:D (3.3) BS03 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160079 3ksa:D (3.3) BS04 MG 5.6.2.2 GO:0003677 ... Q59961 20596531
    160080 3ksb:A (3.5) BS01 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160081 3ksb:A (3.5) BS02 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160082 3ksb:B (3.5) BS01 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160083 3ksb:B (3.5) BS02 dna 5.6.2.2 GO:0003677 ... P72525 20596531
    160084 3ksb:C (3.5) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160085 3ksb:C (3.5) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160086 3ksb:C (3.5) BS03 MG 5.6.2.2 GO:0003677 ... Q59961 20596531
    160087 3ksb:D (3.5) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160088 3ksb:D (3.5) BS02 dna 5.6.2.2 GO:0003677 ... Q59961 20596531
    160089 3ksb:D (3.5) BS03 MG 5.6.2.2 GO:0003677 ... Q59961 20596531
    160090 3ksd:O (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160091 3ksd:P (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160092 3ksd:Q (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160093 3ksd:R (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160094 3ksg:A (2.3) BS01 SME N/A N/A N/A N/A
    160095 3ksg:B (2.3) BS01 SME N/A N/A N/A N/A
    160096 3ksl:A (2.05) BS01 SZH 2.5.1.58
    2.5.1.59
    GO:0004660 ... Q04631 19954434
    160097 3ksl:B (2.05) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 19954434
    160098 3ksl:B (2.05) BS02 SZH 2.5.1.58 GO:0003824 ... Q02293 19954434
    160099 3ksm:A (1.9) BS01 BDR ? N/A Q2S7D2 N/A
    160100 3ksm:B (1.9) BS01 BDR ? N/A Q2S7D2 N/A
    160101 3ksq:B (2.1) BS01 MG 2.5.1.58 GO:0003824 ... Q02293 20056542
    160102 3ksq:B (2.1) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 20056542
    160103 3ksq:B (2.1) BS03 FPP 2.5.1.58 GO:0003824 ... Q02293 20056542
    160104 3ksq:B (2.1) BS04 Z96 2.5.1.58 GO:0003824 ... Q02293 20056542 MOAD: ic50=0.38nM
    160105 3kst:A (1.7) BS01 CA ? GO:0004553 ... Q8A3Q9 N/A
    160106 3kst:B (1.7) BS01 CA ? GO:0004553 ... Q8A3Q9 N/A
    160107 3ksv:A (1.9) BS01 ZN ? GO:0003824 ... Q4QFW1 N/A
    160108 3ksw:A (3.05) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488
    160109 3ksw:A (3.05) BS02 VNF 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488 BindingDB: Kd=7e+1nM
    160110 3ksz:O (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160111 3ksz:P (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160112 3ksz:Q (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160113 3ksz:R (2.6) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 20620151
    160114 3kt0:A (2.1) BS01 EMN 6.1.1.2 GO:0000166 ... Q12109 20123733
    160115 3kt1:A (2.5) BS01 FE 1.14.11.- GO:0000288 ... P40032 20040577
    160116 3kt3:A (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    160117 3kt3:A (2.6) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160118 3kt3:A (2.6) BS03 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160119 3kt3:B (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    160120 3kt3:B (2.6) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160121 3kt3:C (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    160122 3kt3:C (2.6) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160123 3kt3:D (2.6) BS01 TYM 6.1.1.2 GO:0000166 ... Q12109 20123733
    160124 3kt3:D (2.6) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160125 3kt4:A (2.73) BS01 FE 1.14.11.- GO:0000288 ... P40032 20040577
    160126 3kt6:A (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    160127 3kt6:A (2.8) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160128 3kt6:B (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    160129 3kt6:B (2.8) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160130 3kt6:C (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    160131 3kt6:C (2.8) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160132 3kt6:C (2.8) BS03 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160133 3kt6:D (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    160134 3kt7:A (1.77) BS01 FE 1.14.11.- GO:0000288 ... P40032 20040577
    160135 3kt7:A (1.77) BS02 AKG 1.14.11.- GO:0000288 ... P40032 20040577
    160136 3kt8:A (3.0) BS01 LTN 6.1.1.2 GO:0000166 ... Q12109 20123733
    160137 3kt8:B (3.0) BS01 LTN 6.1.1.2 GO:0000166 ... Q12109 20123733
    160138 3kt8:B (3.0) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160139 3kt8:B (3.0) BS03 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160140 3kt8:C (3.0) BS01 LTN 6.1.1.2 GO:0000166 ... Q12109 20123733
    160141 3kt8:C (3.0) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160142 3kt8:D (3.0) BS01 LTN 6.1.1.2 GO:0000166 ... Q12109 20123733
    160143 3kt8:D (3.0) BS02 SO4 6.1.1.2 GO:0000166 ... Q12109 20123733
    160144 3kta:A (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    160145 3kta:A (1.627) BS02 MG ? N/A Q8TZY2 20600125
    160146 3kta:B (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    160147 3kta:C (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    160148 3kta:C (1.627) BS02 MG ? N/A Q8TZY2 20600125
    160149 3ktb:D (2.1) BS01 CA ? GO:0003677 ... A6L7X2 N/A
    160150 3ktc:A (1.54) BS01 FE 5.3.1.36 GO:0005737 ... Q6D5T7 N/A
    160151 3ktc:A (1.54) BS02 FE 5.3.1.36 GO:0005737 ... Q6D5T7 N/A
    160152 3ktc:B (1.54) BS01 FE 5.3.1.36 GO:0005737 ... Q6D5T7 N/A
    160153 3ktc:B (1.54) BS02 FE 5.3.1.36 GO:0005737 ... Q6D5T7 N/A
    160154 3kti:A (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160155 3kti:A (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160156 3kti:B (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160157 3kti:B (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160158 3kti:C (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160159 3kti:C (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160160 3kti:D (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160161 3kti:D (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160162 3kti:E (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160163 3kti:E (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160164 3kti:F (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160165 3kti:F (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160166 3kti:G (2.0) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160167 3kti:G (2.0) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160168 3ktj:A (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160169 3ktj:A (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160170 3ktj:B (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160171 3ktj:B (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160172 3ktj:C (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160173 3ktj:C (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160174 3ktj:D (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160175 3ktj:D (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160176 3ktj:E (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160177 3ktj:E (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160178 3ktj:F (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160179 3ktj:F (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160180 3ktj:G (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160181 3ktj:G (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160182 3ktk:A (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160183 3ktk:A (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160184 3ktk:B (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160185 3ktk:B (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160186 3ktk:C (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160187 3ktk:C (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160188 3ktk:D (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160189 3ktk:D (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160190 3ktk:E (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160191 3ktk:E (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160192 3ktk:F (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160193 3ktk:F (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160194 3ktk:G (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160195 3ktk:G (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160196 3ktk:H (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160197 3ktk:H (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160198 3ktk:I (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160199 3ktk:I (2.6) BS02 peptide 3.4.21.92 GO:0004176 ... P80244 20305655
    160200 3ktk:J (2.6) BS01 peptide 3.4.21.92 GO:0004176 ... P80244 20305655

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).