SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    160401 3kvn:A (2.499) BS01 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    160402 3kvn:A (2.499) BS02 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    160403 3kvn:X (2.499) BS01 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    160404 3kvn:X (2.499) BS02 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    160405 3kvo:A (2.25) BS01 NAP 1.-.-.- N/A Q6YN16 N/A
    160406 3kvo:A (2.25) BS02 NAP 1.-.-.- N/A Q6YN16 N/A
    160407 3kvo:B (2.25) BS01 NAP 1.-.-.- N/A Q6YN16 N/A
    160408 3kvo:B (2.25) BS02 NAP 1.-.-.- N/A Q6YN16 N/A
    160409 3kvr:A (2.6) BS01 URF 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160410 3kvr:A (2.6) BS02 SO4 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160411 3kvr:A (2.6) BS03 R2G 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160412 3kvr:B (2.6) BS01 URF 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160413 3kvr:B (2.6) BS02 SO4 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160414 3kvr:B (2.6) BS03 R2G 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160415 3kvs:A (1.5) BS01 BLA ? GO:0009535 ... P00306 N/A
    160416 3kvs:A (1.5) BS02 BLA ? GO:0009535 ... P00306 N/A
    160417 3kvs:B (1.5) BS01 BLA ? GO:0009535 ... P00311 N/A
    160418 3kvs:B (1.5) BS02 BLA ? GO:0009535 ... P00311 N/A
    160419 3kvu:A (2.0) BS01 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160420 3kvu:A (2.0) BS02 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160421 3kvu:B (2.0) BS01 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160422 3kvu:B (2.0) BS02 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160423 3kvu:C (2.0) BS01 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160424 3kvu:D (2.0) BS01 ACO 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160425 3kvv:A (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160426 3kvv:A (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160427 3kvv:A (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160428 3kvv:B (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160429 3kvv:B (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160430 3kvv:B (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160431 3kvv:C (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160432 3kvv:C (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160433 3kvv:C (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160434 3kvv:D (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160435 3kvv:D (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160436 3kvv:D (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160437 3kvv:E (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160438 3kvv:E (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160439 3kvv:E (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160440 3kvv:F (1.8) BS01 URF 2.4.2.3 GO:0003824 ... P12758 20364833
    160441 3kvv:F (1.8) BS02 SO4 2.4.2.3 GO:0003824 ... P12758 20364833
    160442 3kvv:F (1.8) BS03 R2B 2.4.2.3 GO:0003824 ... P12758 20364833
    160443 3kvw:A (2.28) BS01 IRB 2.7.12.1 GO:0004672 ... Q92630 N/A
    160444 3kvx:A (2.4) BS01 FMY 2.7.11.24 GO:0004672 ... P53779 19947601 MOAD: ic50=0.148uM
    160445 3kvy:A (2.3) BS01 SO4 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160446 3kvy:A (2.3) BS02 URA 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160447 3kvy:A (2.3) BS03 R2B 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160448 3kvy:B (2.3) BS01 SO4 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160449 3kvy:B (2.3) BS02 URA 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160450 3kvy:B (2.3) BS03 R2B 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    160451 3kvz:A (2.1) BS01 ENV 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160452 3kvz:B (2.1) BS01 ENV 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160453 3kvz:E (2.1) BS01 ENV 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160454 3kvz:F (2.1) BS01 ENV 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160455 3kw0:A (2.5) BS01 LYS ? N/A Q74NK7 21799766
    160456 3kw0:B (2.5) BS01 LYS ? N/A Q74NK7 21799766
    160457 3kw0:C (2.5) BS01 LYS ? N/A Q74NK7 21799766
    160458 3kw0:D (2.5) BS01 LYS ? N/A Q74NK7 21799766
    160459 3kw1:C (1.9) BS01 ENW 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160460 3kw1:D (1.9) BS01 ENW 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160461 3kw1:E (1.9) BS01 ENW 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160462 3kw1:F (1.9) BS01 ENW 3.1.2.29 GO:0016289 ... Q1EMV2 20430898
    160463 3kw2:A (2.0) BS01 ADN 2.1.1.193 GO:0005737 ... B2RH75 N/A
    160464 3kw2:B (2.0) BS01 ADN 2.1.1.193 GO:0005737 ... B2RH75 N/A
    160465 3kw4:A (2.67) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    160466 3kw4:A (2.67) BS02 TIC 1.14.14.1 GO:0004497 ... P00178 20815363
    160467 3kw4:A (2.67) BS03 CM5 1.14.14.1 GO:0004497 ... P00178 20815363
    160468 3kw4:A (2.67) BS04 CM5 1.14.14.1 GO:0004497 ... P00178 20815363
    160469 3kw4:A (2.67) BS05 CH0 1.14.14.1 GO:0004497 ... P00178 20815363
    160470 3kw5:A (2.83) BS01 GVE 3.4.19.12 GO:0004197 ... P09936 20439756
    160471 3kw7:A (3.44) BS01 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160472 3kw7:A (3.44) BS02 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160473 3kw7:A (3.44) BS03 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160474 3kw7:A (3.44) BS04 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160475 3kw7:B (3.44) BS01 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160476 3kw7:B (3.44) BS02 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160477 3kw7:B (3.44) BS03 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160478 3kw7:B (3.44) BS04 CU 1.10.3.2 GO:0005507 ... A0ACD6B864 20208154
    160479 3kw8:A (2.29) BS01 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    160480 3kw8:A (2.29) BS02 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    160481 3kw8:A (2.29) BS03 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    160482 3kw9:A (1.8) BS01 ORG 3.4.22.38 GO:0006508 ... P43235 20149657 BindingDB: IC50=1nM
    160483 3kw9:A (1.8) BS02 TFA 3.4.22.38 GO:0006508 ... P43235 20149657
    160484 3kwa:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20590092
    160485 3kwa:A (2.0) BS02 SPM 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20590092 BindingDB: Ki=84000nM
    160486 3kwb:X (2.02) BS01 ORH 3.4.22.38 GO:0006508 ... P43235 20153187 BindingDB: IC50=17nM
    160487 3kwb:Y (2.02) BS01 ORH 3.4.22.38 GO:0006508 ... P43235 20153187 BindingDB: IC50=17nM
    160488 3kwc:A (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160489 3kwc:B (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160490 3kwc:C (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160491 3kwc:D (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160492 3kwc:E (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160493 3kwc:F (2.0) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160494 3kwd:A (1.1) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160495 3kwe:A (1.1) BS01 ZN 4.2.1.1 N/A Q8DKB5 20133749
    160496 3kwf:A (2.4) BS01 B1Q 3.4.14.5 GO:0001618 ... P27487 20031405 MOAD: ic50=6.8nM
    BindingDB: IC50=6.8nM
    160497 3kwf:B (2.4) BS01 B1Q 3.4.14.5 GO:0001618 ... P27487 20031405 MOAD: ic50=6.8nM
    BindingDB: IC50=6.8nM
    160498 3kwj:A (2.8) BS01 23Q 3.4.14.5 GO:0001618 ... P27487 20031408 BindingDB: IC50=0.500000nM
    160499 3kwj:B (2.8) BS01 23Q 3.4.14.5 GO:0001618 ... P27487 20031408 BindingDB: IC50=0.500000nM
    160500 3kwk:A (1.54) BS01 FMN ? GO:0016491 ... Q8ABC9 N/A
    160501 3kwm:D (2.32) BS01 3GR 5.3.1.6 GO:0004751 ... Q5NFM5 N/A
    160502 3kwo:A (1.985) BS01 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160503 3kwo:A (1.985) BS02 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160504 3kwo:B (1.985) BS01 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160505 3kwo:C (1.985) BS01 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160506 3kwo:C (1.985) BS02 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160507 3kwo:D (1.985) BS01 ZN 1.16.-.- GO:0005737 ... Q0P891 N/A
    160508 3kwq:A (3.5) BS01 dna ? GO:0000786 ... P84233 20100606
    160509 3kwq:A (3.5) BS02 dna ? GO:0000786 ... P84233 20100606
    160510 3kwq:B (3.5) BS01 dna ? GO:0003677 ... P62799 20100606
    160511 3kwq:B (3.5) BS02 dna ? GO:0003677 ... P62799 20100606
    160512 3kwq:C (3.5) BS01 dna ? GO:0000786 ... P06897 20100606
    160513 3kwq:C (3.5) BS02 dna ? GO:0000786 ... P06897 20100606
    160514 3kwq:D (3.5) BS01 dna ? GO:0000786 ... P02281 20100606
    160515 3kwq:D (3.5) BS02 dna ? GO:0000786 ... P02281 20100606
    160516 3kwq:E (3.5) BS01 dna ? GO:0000786 ... P84233 20100606
    160517 3kwq:E (3.5) BS02 dna ? GO:0000786 ... P84233 20100606
    160518 3kwq:F (3.5) BS01 dna ? GO:0003677 ... P62799 20100606
    160519 3kwq:F (3.5) BS02 dna ? GO:0003677 ... P62799 20100606
    160520 3kwq:G (3.5) BS01 dna ? GO:0000786 ... P06897 20100606
    160521 3kwq:G (3.5) BS02 dna ? GO:0000786 ... P06897 20100606
    160522 3kwq:H (3.5) BS01 dna ? GO:0000786 ... P02281 20100606
    160523 3kwq:H (3.5) BS02 dna ? GO:0000786 ... P02281 20100606
    160524 3kws:A (1.68) BS01 MG ? N/A A6LIL3 N/A
    160525 3kws:B (1.68) BS01 MG ? N/A A6LIL3 N/A
    160526 3kwv:A (3.101) BS01 CA ? GO:0005576 ... P13423 21037566
    160527 3kwv:A (3.101) BS02 CA ? GO:0005576 ... P13423 21037566
    160528 3kwv:B (3.101) BS01 CA ? GO:0005576 ... P13423 21037566
    160529 3kwv:B (3.101) BS02 CA ? GO:0005576 ... P13423 21037566
    160530 3kwv:D (3.101) BS01 CA ? GO:0005576 ... P13423 21037566
    160531 3kwv:D (3.101) BS02 CA ? GO:0005576 ... P13423 21037566
    160532 3kwv:E (3.101) BS01 CA ? GO:0005576 ... P13423 21037566
    160533 3kwv:E (3.101) BS02 CA ? GO:0005576 ... P13423 21037566
    160534 3kww:A (2.18) BS01 peptide ? N/A P01889 20483993
    160535 3kwx:A (2.4) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 N/A
    160536 3kwy:A (2.3) BS01 peptide ? GO:0003677 ... P19793 20063036
    160537 3kwy:A (2.3) BS02 T9T ? GO:0003677 ... P19793 20063036
    160538 3kwz:A (1.49) BS01 KWZ 3.4.22.38 GO:0006508 ... P43235 20149657 BindingDB: IC50=4nM
    160539 3kx1:A (1.51) BS01 KX1 3.4.22.38 GO:0006508 ... P43235 20149657 MOAD: ic50=100nM
    BindingDB: IC50=100nM
    160540 3kx2:A (2.2) BS01 ADP 3.6.4.13 GO:0000390 ... P53131 20168331
    160541 3kx2:B (2.2) BS01 ADP 3.6.4.13 GO:0000390 ... P53131 20168331
    160542 3kx3:A (1.803) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160543 3kx3:A (1.803) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779 BindingDB: Kd=82nM
    160544 3kx3:B (1.803) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160545 3kx3:B (1.803) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779 BindingDB: Kd=82nM
    160546 3kx4:A (1.95) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160547 3kx4:B (1.95) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160548 3kx5:A (1.686) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160549 3kx5:B (1.686) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    160550 3kxa:A (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    160551 3kxa:B (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    160552 3kxa:C (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    160553 3kxa:D (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    160554 3kxb:A (3.2) BS01 dna ? GO:0000786 ... P84233 20100606
    160555 3kxb:A (3.2) BS02 dna ? GO:0000786 ... P84233 20100606
    160556 3kxb:B (3.2) BS01 dna ? GO:0000786 ... P62799 20100606
    160557 3kxb:C (3.2) BS01 dna ? GO:0000786 ... Q6AZJ8 20100606
    160558 3kxb:C (3.2) BS02 dna ? GO:0000786 ... Q6AZJ8 20100606
    160559 3kxb:D (3.2) BS01 dna ? GO:0000786 ... P02281 20100606
    160560 3kxb:E (3.2) BS01 dna ? GO:0000786 ... P84233 20100606
    160561 3kxb:E (3.2) BS02 dna ? GO:0000786 ... P84233 20100606
    160562 3kxb:F (3.2) BS01 dna ? GO:0000786 ... P62799 20100606
    160563 3kxb:F (3.2) BS02 dna ? GO:0000786 ... P62799 20100606
    160564 3kxb:G (3.2) BS01 dna ? GO:0000786 ... Q6AZJ8 20100606
    160565 3kxb:G (3.2) BS02 dna ? GO:0000786 ... Q6AZJ8 20100606
    160566 3kxb:H (3.2) BS01 dna ? GO:0000786 ... P02281 20100606
    160567 3kxb:H (3.2) BS02 dna ? GO:0000786 ... P02281 20100606
    160568 3kxd:A (2.2) BS01 CD ? GO:0006813 ... O27564 20371380
    160569 3kxd:A (2.2) BS02 CD ? GO:0006813 ... O27564 20371380
    160570 3kxd:B (2.2) BS01 CD ? GO:0006813 ... O27564 20371380
    160571 3kxf:A (3.1) BS01 peptide ? N/A P01889 20483993
    160572 3kxf:C (3.1) BS01 peptide ? N/A P01889 20483993
    160573 3kxf:D (3.1) BS01 peptide ? N/A P01848 20483993
    160574 3kxf:E (3.1) BS01 peptide ? N/A A0A5B9 20483993
    160575 3kxf:G (3.1) BS01 peptide ? N/A P01848 20483993
    160576 3kxf:H (3.1) BS01 peptide ? N/A A0A5B9 20483993
    160577 3kxf:I (3.1) BS01 peptide ? N/A P01889 20483993
    160578 3kxf:K (3.1) BS01 peptide ? N/A P01889 20483993
    160579 3kxf:M (3.1) BS01 peptide ? N/A P01848 20483993
    160580 3kxf:N (3.1) BS01 peptide ? N/A P01848 20483993
    160581 3kxf:O (3.1) BS01 peptide ? N/A A0A5B9 20483993
    160582 3kxf:P (3.1) BS01 peptide ? N/A A0A5B9 20483993
    160583 3kxg:A (1.7) BS01 K6X 2.7.11.1 GO:0004672 ... P28523 21513497
    160584 3kxh:A (1.7) BS01 K66 2.7.11.1 GO:0004672 ... P28523 21513497
    160585 3kxi:A (2.65) BS01 GDP ? GO:0003924 ... Q980M3 20400571
    160586 3kxm:A (1.75) BS01 K74 2.7.11.1 GO:0004672 ... P28523 21513497
    160587 3kxn:A (2.0) BS01 K8X 2.7.11.1 GO:0004672 ... P28523 21513497
    160588 3kxo:A (2.1) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 N/A
    160589 3kxo:A (2.1) BS02 KXO 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 N/A BindingDB: IC50=200nM, Kd=20nM, EC50=35nM
    160590 3kxo:B (2.1) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 N/A
    160591 3kxo:B (2.1) BS02 KXO 2.5.1.18
    5.3.99.2
    GO:0000287 ... O60760 N/A BindingDB: IC50=200nM, Kd=20nM, EC50=35nM
    160592 3kxt:A (1.602) BS01 dna ? GO:0003690 ... Q97ZE3 20512977
    160593 3kxt:A (1.602) BS02 dna ? GO:0003690 ... Q97ZE3 20512977
    160594 3kxw:A (1.851) BS01 1ZZ ? GO:0005886 ... Q5ZTD3 21185305
    160595 3kxz:A (2.37) BS01 CA 2.7.10.2 GO:0004672 ... P06239 20038108
    160596 3kxz:A (2.37) BS02 925 2.7.10.2 GO:0004672 ... P06239 20038108 MOAD: ic50=0.035uM
    160597 3ky9:A (2.731) BS01 ZN ? GO:0005085 ... P15498 20141838
    160598 3ky9:A (2.731) BS02 ZN ? GO:0005085 ... P15498 20141838
    160599 3ky9:B (2.731) BS01 ZN ? GO:0005085 ... P15498 20141838
    160600 3ky9:B (2.731) BS02 ZN ? GO:0005085 ... P15498 20141838

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).