SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175801 3pkj:F (2.12) BS01 A2N 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0000122 ... Q8N6T7 21362626
    175802 3pkj:F (2.12) BS02 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0000122 ... Q8N6T7 21362626
    175803 3pkk:A (1.733) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175804 3pkk:A (1.733) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175805 3pkl:A (1.749) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175806 3pkl:A (1.749) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175807 3pkm:A (3.103) BS01 rna 3.1.-.- GO:0016788 ... Q8U1S4 21300293
    175808 3pkm:X (3.103) BS01 rna 3.1.-.- GO:0016788 ... Q8U1S4 21300293
    175809 3pkn:A (1.8) BS01 peptide ? GO:0003723 ... P11940 21098120
    175810 3pkp:A (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175811 3pkp:B (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175812 3pkp:B (2.6) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175813 3pkp:C (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175814 3pkp:D (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175815 3pkp:D (2.6) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175816 3pkp:I (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175817 3pkp:I (2.6) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175818 3pkp:J (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175819 3pkp:J (2.6) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175820 3pkp:K (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175821 3pkp:L (2.6) BS01 DTP 2.7.7.24 GO:0000271 ... P26393 21317292
    175822 3pkq:A (2.4) BS01 DGT 2.7.7.24 GO:0000271 ... P26393 21317292
    175823 3pkq:A (2.4) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175824 3pkq:B (2.4) BS01 DGT 2.7.7.24 GO:0000271 ... P26393 21317292
    175825 3pkq:B (2.4) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175826 3pkq:C (2.4) BS01 DGT 2.7.7.24 GO:0000271 ... P26393 21317292
    175827 3pkq:C (2.4) BS02 MG 2.7.7.24 GO:0000271 ... P26393 21317292
    175828 3pkq:D (2.4) BS01 DGT 2.7.7.24 GO:0000271 ... P26393 21317292
    175829 3pks:A (1.75) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175830 3pks:A (1.75) BS02 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175831 3pkt:A (1.75) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175832 3pkt:A (1.75) BS02 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175833 3pku:A (1.75) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175834 3pkw:A (1.8) BS01 MN ? N/A E3SET7 21166463
    175835 3pkx:A (1.5) BS01 MN ? N/A E3SET7 21166463
    175836 3pkx:A (1.5) BS02 TOF ? N/A E3SET7 21166463
    175837 3pky:A (3.1) BS01 dna 6.5.1.1 N/A P9WNV3 21255731
    175838 3pky:A (3.1) BS02 dna 6.5.1.1 N/A P9WNV3 21255731
    175839 3pky:A (3.1) BS03 UTP 6.5.1.1 N/A P9WNV3 21255731
    175840 3pky:A (3.1) BS04 MN 6.5.1.1 N/A P9WNV3 21255731
    175841 3pky:A (3.1) BS05 MN 6.5.1.1 N/A P9WNV3 21255731
    175842 3pky:B (3.1) BS01 dna 6.5.1.1 N/A P9WNV3 21255731
    175843 3pky:B (3.1) BS02 dna 6.5.1.1 N/A P9WNV3 21255731
    175844 3pky:B (3.1) BS03 UTP 6.5.1.1 N/A P9WNV3 21255731
    175845 3pky:B (3.1) BS04 MN 6.5.1.1 N/A P9WNV3 21255731
    175846 3pky:B (3.1) BS05 MN 6.5.1.1 N/A P9WNV3 21255731
    175847 3pl1:A (2.2) BS01 FE2 3.5.1.-
    3.5.1.19
    GO:0006769 ... I6XD65 21283666
    175848 3pl3:A (1.1804) BS01 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175849 3pl3:A (1.1804) BS02 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175850 3pl3:A (1.1804) BS03 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175851 3pl3:A (1.1804) BS04 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175852 3pl3:A (1.1804) BS05 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175853 3pl3:A (1.1804) BS06 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175854 3pl3:A (1.1804) BS07 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175855 3pl3:A (1.1804) BS08 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175856 3pl7:A (2.613) BS01 peptide ? GO:0042981 ... Q07817 21199865
    175857 3pl7:B (2.613) BS01 peptide ? GO:0042981 ... Q07817 21199865
    175858 3pl8:A (1.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q7ZA32 21515286
    175859 3pl8:A (1.35) BS02 G3F 1.1.3.10 GO:0016614 ... Q7ZA32 21515286
    175860 3pl9:A (2.8) BS01 CLA ? GO:0003729 ... F2Z293 21297637
    175861 3pl9:A (2.8) BS02 CLA ? GO:0003729 ... F2Z293 21297637
    175862 3pl9:A (2.8) BS03 CLA ? GO:0003729 ... F2Z293 21297637
    175863 3pl9:A (2.8) BS04 CHL ? GO:0003729 ... F2Z293 21297637
    175864 3pl9:A (2.8) BS05 CHL ? GO:0003729 ... F2Z293 21297637
    175865 3pl9:A (2.8) BS06 CHL ? GO:0003729 ... F2Z293 21297637
    175866 3pl9:A (2.8) BS07 CLA ? GO:0003729 ... F2Z293 21297637
    175867 3pl9:A (2.8) BS08 CLA ? GO:0003729 ... F2Z293 21297637
    175868 3pl9:A (2.8) BS09 CLA ? GO:0003729 ... F2Z293 21297637
    175869 3pl9:A (2.8) BS10 CLA ? GO:0003729 ... F2Z293 21297637
    175870 3pl9:A (2.8) BS11 CLA ? GO:0003729 ... F2Z293 21297637
    175871 3pl9:A (2.8) BS12 CHL ? GO:0003729 ... F2Z293 21297637
    175872 3pl9:A (2.8) BS13 CLA ? GO:0003729 ... F2Z293 21297637
    175873 3pla:A (3.15) BS01 rna ? GO:0005515 ... Q97ZH3 21270896
    175874 3pla:A (3.15) BS02 rna ? GO:0005515 ... Q97ZH3 21270896
    175875 3pla:A (3.15) BS03 rna ? GO:0005515 ... Q97ZH3 21270896
    175876 3pla:A (3.15) BS04 rna ? GO:0005515 ... Q97ZH3 21270896
    175877 3pla:B (3.15) BS01 rna ? GO:0005515 ... Q97ZH3 21270896
    175878 3pla:B (3.15) BS02 rna ? GO:0005515 ... Q97ZH3 21270896
    175879 3pla:B (3.15) BS03 rna ? GO:0005515 ... Q97ZH3 21270896
    175880 3pla:B (3.15) BS04 rna ? GO:0005515 ... Q97ZH3 21270896
    175881 3pla:C (3.15) BS01 rna ? GO:0001682 ... D0KRE2 21270896
    175882 3pla:C (3.15) BS02 rna ? GO:0001682 ... D0KRE2 21270896
    175883 3pla:D (3.15) BS01 rna ? GO:0001682 ... D0KRE2 21270896
    175884 3pla:D (3.15) BS02 rna ? GO:0001682 ... D0KRE2 21270896
    175885 3pla:E (3.15) BS01 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175886 3pla:E (3.15) BS02 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175887 3pla:E (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    175888 3pla:F (3.15) BS01 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175889 3pla:F (3.15) BS02 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175890 3pla:F (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    175891 3pla:K (3.15) BS01 rna ? GO:0005515 ... Q97ZH3 21270896
    175892 3pla:K (3.15) BS02 rna ? GO:0005515 ... Q97ZH3 21270896
    175893 3pla:L (3.15) BS01 rna ? GO:0001682 ... D0KRE2 21270896
    175894 3pla:M (3.15) BS01 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175895 3pla:M (3.15) BS02 rna 2.1.1.- GO:0000494 ... P58032 21270896
    175896 3pla:M (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    175897 3plb:A (1.18) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    175898 3pld:A (1.4) BS01 F90 3.4.23.22 GO:0004190 ... P11838 21972967
    175899 3ple:A (1.6) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175900 3ple:A (1.6) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175901 3ple:A (1.6) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175902 3plf:B (1.92) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 21163258
    175903 3plf:B (1.92) BS02 CA 2.3.2.27 GO:0001784 ... P22681 21163258
    175904 3plf:D (1.92) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 21163258
    175905 3plf:D (1.92) BS02 CA 2.3.2.27 GO:0001784 ... P22681 21163258
    175906 3plg:A (1.601) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175907 3plg:A (1.601) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175908 3plg:A (1.601) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175909 3plh:A (1.8) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175910 3plh:A (1.8) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175911 3plh:A (1.8) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175912 3plh:A (1.8) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175913 3pli:A (1.68) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175914 3pli:A (1.68) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175915 3pli:A (1.68) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175916 3pli:A (1.68) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175917 3plj:A (1.732) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175918 3plj:A (1.732) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175919 3plj:A (1.732) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175920 3plk:A (1.53) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    175921 3plk:A (1.53) BS02 ANH 3.4.21.4 GO:0004175 ... P00760 25003390
    175922 3pll:A (1.73) BS01 F06 3.4.23.22 GO:0004190 ... P11838 21972967
    175923 3plm:A (1.621) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    175924 3plm:A (1.621) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175925 3plm:A (1.621) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    175926 3plm:A (1.621) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    175927 3pln:A (1.5) BS01 U5P 1.1.1.22 GO:0000271 ... A0A0J9WZA6 21536136
    175928 3plp:A (1.63) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    175929 3plp:A (1.63) BS02 BBA 3.4.21.4 GO:0004175 ... P00760 25003390
    175930 3plq:A (2.3) BS01 RP2 ? GO:0005952 ... P00514 N/A
    175931 3plr:A (1.7) BS01 NAI 1.1.1.22 GO:0000271 ... A0A0J9WZA6 21536136
    175932 3plr:A (1.7) BS02 U5P 1.1.1.22 GO:0000271 ... A0A0J9WZA6 21536136
    175933 3pls:A (2.24) BS01 MG 2.7.10.1 GO:0004672 ... Q04912 20726546
    175934 3pls:A (2.24) BS02 ANP 2.7.10.1 GO:0004672 ... Q04912 20726546
    175935 3plu:A (1.4) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    175936 3plu:B (1.4) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    175937 3plv:A (1.9) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    175938 3plw:A (1.4) BS01 ZN ? GO:0006281 ... P35926 21193392
    175939 3plw:A (1.4) BS02 ZN ? GO:0006281 ... P35926 21193392
    175940 3plx:B (1.747) BS01 peptide 4.1.1.11 GO:0004068 ... Q9PIK3 N/A
    175941 3ply:A (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    175942 3ply:B (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    175943 3ply:C (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    175944 3ply:D (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    175945 3plz:A (1.75) BS01 peptide ? GO:0003677 ... O00482 21391689
    175946 3plz:A (1.75) BS02 470 ? GO:0003677 ... O00482 21391689 BindingDB: EC50=430nM
    175947 3plz:B (1.75) BS01 peptide ? GO:0003677 ... O00482 21391689
    175948 3plz:B (1.75) BS02 470 ? GO:0003677 ... O00482 21391689 BindingDB: EC50=430nM
    175949 3pm0:A (2.7) BS01 HEM 1.14.14.1
    4.2.1.152
    GO:0002930 ... Q16678 21147782
    175950 3pm0:A (2.7) BS02 BHF 1.14.14.1
    4.2.1.152
    GO:0002930 ... Q16678 21147782 BindingDB: IC50=>10000nM, EC50=35000nM, Ki=16nM
    175951 3pm1:A (2.8) BS01 ET ? GO:0003677 ... P0A0N3 21264225
    175952 3pm3:A (1.53) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    175953 3pm3:A (1.53) BS02 TFN 3.4.21.4 GO:0004175 ... P00760 25003390
    175954 3pm4:A (1.68) BS01 F5N 3.4.23.22 GO:0004190 ... P11838 21972967
    175955 3pm5:A (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175956 3pm5:A (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175957 3pm5:A (2.3) BS03 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175958 3pm5:A (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175959 3pm5:B (2.3) BS01 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175960 3pm5:B (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175961 3pm5:B (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175962 3pm5:B (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175963 3pm5:C (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175964 3pm5:C (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175965 3pm5:C (2.3) BS03 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175966 3pm5:C (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175967 3pm5:D (2.3) BS01 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175968 3pm5:D (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175969 3pm5:D (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175970 3pm5:D (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175971 3pm6:A (2.2) BS01 ZN 4.1.2.13 GO:0004332 ... P0CJ44 21359836
    175972 3pm6:B (2.2) BS01 ZN 4.1.2.13 GO:0004332 ... P0CJ44 21359836
    175973 3pm8:A (2.0) BS01 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175974 3pm8:A (2.0) BS02 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175975 3pm8:A (2.0) BS03 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175976 3pm8:B (2.0) BS01 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175977 3pm8:B (2.0) BS02 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175978 3pm8:B (2.0) BS03 CA 2.7.11.1 GO:0005509 ... O15865 N/A
    175979 3pm9:A (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175980 3pm9:B (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175981 3pm9:C (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175982 3pm9:D (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175983 3pm9:E (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175984 3pm9:F (2.57) BS01 FAD ? GO:0003824 ... Q6NAV4 N/A
    175985 3pma:B (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 21736375
    175986 3pma:B (2.2) BS02 YYJ 3.4.21.5 GO:0004252 ... P00735 21736375
    175987 3pma:D (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 21736375
    175988 3pma:D (2.2) BS02 GU4 3.4.21.5 GO:0004252 ... P00735 21736375
    175989 3pma:D (2.2) BS03 YYJ 3.4.21.5 GO:0004252 ... P00735 21736375
    175990 3pma:D (2.2) BS04 GU4 3.4.21.5 GO:0004252 ... P00735 21736375
    175991 3pmb:B (2.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 21736375
    175992 3pmb:D (2.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 21736375
    175993 3pmd:A (1.76) BS01 11A ? N/A Q44635 21216948
    175994 3pme:A (1.56) BS01 SO4 ? GO:0005576 ... Q5DW55 21130733
    175995 3pmf:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 22496593
    175996 3pmf:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 22496593
    175997 3pmg:A (2.4) BS01 MG 5.4.2.2 GO:0000287 ... P00949 15299905
    175998 3pmg:B (2.4) BS01 MG 5.4.2.2 GO:0000287 ... P00949 15299905
    175999 3pmh:B (3.2) BS01 0G7 3.4.21.5 GO:0004252 ... P00734 21555542 BindingDB: IC50=1.5nM
    176000 3pmj:A (1.45) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).