SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1a1f:A (2.1) BS04 ZN ? N/A P08046 9562555
    1602 1a1f:A (2.1) BS05 ZN ? N/A P08046 9562555
    1603 1a1g:A (1.9) BS01 dna ? N/A P08046 9562555
    1604 1a1g:A (1.9) BS02 dna ? N/A P08046 9562555
    1605 1a1g:A (1.9) BS03 ZN ? N/A P08046 9562555
    1606 1a1g:A (1.9) BS04 ZN ? N/A P08046 9562555
    1607 1a1g:A (1.9) BS05 ZN ? N/A P08046 9562555
    1608 1a1h:A (1.6) BS01 dna ? N/A P08046 9562555
    1609 1a1h:A (1.6) BS02 dna ? N/A P08046 9562555
    1610 1a1h:A (1.6) BS03 ZN ? N/A P08046 9562555
    1611 1a1h:A (1.6) BS04 ZN ? N/A P08046 9562555
    1612 1a1h:A (1.6) BS05 ZN ? N/A P08046 9562555
    1613 1a1i:A (1.6) BS01 dna ? N/A P08046 9562555
    1614 1a1i:A (1.6) BS02 dna ? N/A P08046 9562555
    1615 1a1i:A (1.6) BS03 ZN ? N/A P08046 9562555
    1616 1a1i:A (1.6) BS04 ZN ? N/A P08046 9562555
    1617 1a1i:A (1.6) BS05 ZN ? N/A P08046 9562555
    1618 1a1j:A (2.0) BS01 dna ? N/A P08046 9562555
    1619 1a1j:A (2.0) BS02 dna ? N/A P08046 9562555
    1620 1a1j:A (2.0) BS03 ZN ? N/A P08046 9562555
    1621 1a1j:A (2.0) BS04 ZN ? N/A P08046 9562555
    1622 1a1j:A (2.0) BS05 ZN ? N/A P08046 9562555
    1623 1a1k:A (1.9) BS01 dna ? N/A P08046 9562555
    1624 1a1k:A (1.9) BS02 dna ? N/A P08046 9562555
    1625 1a1k:A (1.9) BS03 ZN ? N/A P08046 9562555
    1626 1a1k:A (1.9) BS04 ZN ? N/A P08046 9562555
    1627 1a1k:A (1.9) BS05 ZN ? N/A P08046 9562555
    1628 1a1l:A (2.3) BS01 dna ? N/A P08046 9562555
    1629 1a1l:A (2.3) BS02 dna ? N/A P08046 9562555
    1630 1a1l:A (2.3) BS03 ZN ? N/A P08046 9562555
    1631 1a1l:A (2.3) BS04 ZN ? N/A P08046 9562555
    1632 1a1l:A (2.3) BS05 ZN ? N/A P08046 9562555
    1633 1a1m:A (2.3) BS01 peptide ? N/A P01889 8624812
    1634 1a1n:A (2.0) BS01 peptide ? N/A P01889 8624811
    1635 1a1o:A (2.3) BS01 peptide ? N/A P01889 8624812
    1636 1a1r:A (2.5) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    1637 1a1r:A (2.5) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    1638 1a1r:B (2.5) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    1639 1a1r:B (2.5) BS02 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    1640 1a1r:B (2.5) BS03 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    1641 1a1t:A (-1.00) BS01 rna ? GO:0003676 ... Q75677 9430589
    1642 1a1t:A (-1.00) BS02 ZN ? GO:0003676 ... Q75677 9430589
    1643 1a1t:A (-1.00) BS03 ZN ? GO:0003676 ... Q75677 9430589
    1644 1a1v:A (2.2) BS01 rna 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P27958 9493270
    1645 1a25:A (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    1646 1a25:A (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    1647 1a25:A (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    1648 1a25:B (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    1649 1a25:B (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    1650 1a25:B (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    1651 1a25:B (2.7) BS04 PSE 2.7.11.13 N/A P68403 9817842
    1652 1a26:A (2.25) BS01 CNA 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 9571033
    1653 1a27:A (1.9) BS01 EST 1.1.1.51
    1.1.1.62
    GO:0004303 ... P14061 N/A
    1654 1a27:A (1.9) BS02 NAP 1.1.1.51
    1.1.1.62
    GO:0004303 ... P14061 N/A
    1655 1a28:A (1.8) BS01 STR ? N/A P06401 9620806 MOAD: Ki=5.1nM
    BindingDB: Ki=3.5nM, EC50=2.9nM, IC50=>10000nM
    1656 1a28:B (1.8) BS01 STR ? N/A P06401 9620806 MOAD: Ki=5.1nM
    BindingDB: Ki=3.5nM, EC50=2.9nM, IC50=>10000nM
    1657 1a29:A (2.74) BS01 CA ? GO:0000922 ... P62157 9799490
    1658 1a29:A (2.74) BS02 CA ? GO:0000922 ... P62157 9799490
    1659 1a29:A (2.74) BS03 CA ? GO:0000922 ... P62157 9799490
    1660 1a29:A (2.74) BS04 CA ? GO:0000922 ... P62157 9799490
    1661 1a29:A (2.74) BS05 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    1662 1a29:A (2.74) BS06 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    1663 1a2b:A (2.4) BS01 MG 3.6.5.2 GO:0000281 ... P61586 9545299
    1664 1a2b:A (2.4) BS02 GSP 3.6.5.2 GO:0000281 ... P61586 9545299
    1665 1a2c:H (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    1666 1a2c:H (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    1667 1a2f:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    1668 1a2g:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    1669 1a2i:A (-1.00) BS01 HEC ? GO:0009055 ... P00131 9710542
    1670 1a2i:A (-1.00) BS02 HEC ? GO:0009055 ... P00131 9710542
    1671 1a2i:A (-1.00) BS03 HEC ? GO:0009055 ... P00131 9710542
    1672 1a2i:A (-1.00) BS04 HEC ? GO:0009055 ... P00131 9710542
    1673 1a2n:A (2.8) BS01 TET 2.5.1.7 GO:0003824 ... P0A749 9485407
    1674 1a2p:C (1.5) BS01 ZN 3.1.27.- GO:0003723 ... P00648 10089345
    1675 1a2q:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    1676 1a2q:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    1677 1a2s:A (-1.00) BS01 HEC ? GO:0005506 ... Q09099 9538000
    1678 1a2t:A (1.96) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    1679 1a2t:A (1.96) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    1680 1a2u:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    1681 1a2u:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    1682 1a2v:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1683 1a2v:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1684 1a2v:C (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1685 1a2v:D (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1686 1a2v:E (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1687 1a2v:F (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    1688 1a2x:A (2.3) BS01 CA ? GO:0005509 ... P02586 9560191
    1689 1a2x:A (2.3) BS02 CA ? GO:0005509 ... P02586 9560191
    1690 1a30:A (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 9485357
    1691 1a30:B (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 9485357
    1692 1a31:A (2.1) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    1693 1a31:A (2.1) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    1694 1a34:A (1.81) BS01 rna ? GO:0005198 ... P17574 9514737
    1695 1a34:A (1.81) BS02 rna ? GO:0005198 ... P17574 9514737
    1696 1a34:A (1.81) BS03 SO4 ? GO:0005198 ... P17574 9514737
    1697 1a34:A (1.81) BS04 U ? GO:0005198 ... P17574 9514737
    1698 1a35:A (2.5) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    1699 1a35:A (2.5) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    1700 1a36:A (2.8) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488652
    1701 1a36:A (2.8) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488652
    1702 1a37:A (3.6) BS01 peptide ? GO:0000122 ... P63103 9632691
    1703 1a37:B (3.6) BS01 peptide ? GO:0000122 ... P63103 9632691
    1704 1a38:A (3.35) BS01 peptide ? GO:0000122 ... P63103 9632691
    1705 1a38:B (3.35) BS01 peptide ? GO:0000122 ... P63103 9632691
    1706 1a3b:H (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    1707 1a3b:H (1.8) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    1708 1a3b:H (1.8) BS03 T29 3.4.21.5 GO:0004252 ... P00734 9772168
    1709 1a3e:H (1.85) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    1710 1a3e:H (1.85) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    1711 1a3e:H (1.85) BS03 T16 3.4.21.5 GO:0004252 ... P00734 9772168
    1712 1a3g:A (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    1713 1a3g:B (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    1714 1a3g:C (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    1715 1a3k:A (2.1) BS01 GAL ? GO:0030246 ... P17931 9582341
    1716 1a3l:H (1.95) BS01 CFC ? N/A P01869 9506943
    1717 1a3l:L (1.95) BS01 CFC ? GO:0002250 ... P01837 9506943
    1718 1a3n:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    1719 1a3n:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    1720 1a3n:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    1721 1a3n:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    1722 1a3o:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    1723 1a3o:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    1724 1a3o:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    1725 1a3o:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    1726 1a3q:A (2.1) BS01 dna ? GO:0003677 ... Q00653 9384586
    1727 1a3q:A (2.1) BS02 dna ? GO:0003677 ... Q00653 9384586
    1728 1a3q:B (2.1) BS01 dna ? GO:0003677 ... Q00653 9384586
    1729 1a3q:B (2.1) BS02 dna ? GO:0003677 ... Q00653 9384586
    1730 1a3r:H (2.1) BS01 peptide ? N/A Q505N9 8194515
    1731 1a3r:L (2.1) BS01 peptide ? N/A Q52L64 8194515
    1732 1a3t:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    1733 1a3t:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    1734 1a3u:A (2.05) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    1735 1a3u:A (2.05) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    1736 1a3v:A (2.2) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    1737 1a3v:A (2.2) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    1738 1a3w:A (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    1739 1a3w:A (3.0) BS02 FBP 2.7.1.40 GO:0000287 ... P00549 9519410
    1740 1a3w:A (3.0) BS03 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    1741 1a3w:B (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    1742 1a3w:B (3.0) BS02 FBP 2.7.1.40 GO:0000287 ... P00549 9519410
    1743 1a3w:B (3.0) BS03 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    1744 1a3x:A (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    1745 1a3x:A (3.0) BS02 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    1746 1a3x:B (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    1747 1a3x:B (3.0) BS02 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    1748 1a3z:A (1.9) BS01 CU1 ? GO:0005507 ... P0C918 N/A
    1749 1a40:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 9865949
    1750 1a42:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9541386
    1751 1a42:A (2.25) BS02 BZU 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9541386
    1752 1a44:A (1.84) BS01 ACT ? GO:0005737 ... P13696 9782057
    1753 1a46:H (2.12) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10212123
    1754 1a46:H (2.12) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10212123
    1755 1a46:H (2.12) BS03 00K 3.4.21.5 GO:0004252 ... P00734 10212123
    1756 1a47:A (2.56) BS01 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    1757 1a47:A (2.56) BS02 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    1758 1a47:A (2.56) BS03 G6D 2.4.1.19 GO:0003824 ... P26827 9488711
    1759 1a47:A (2.56) BS04 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    1760 1a47:A (2.56) BS05 ADH 2.4.1.19 GO:0003824 ... P26827 9488711
    1761 1a47:A (2.56) BS06 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    1762 1a47:A (2.56) BS07 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    1763 1a49:A (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1764 1a49:A (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1765 1a49:A (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1766 1a49:B (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1767 1a49:B (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1768 1a49:C (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1769 1a49:C (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1770 1a49:C (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1771 1a49:D (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1772 1a49:D (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1773 1a49:D (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1774 1a49:E (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1775 1a49:E (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1776 1a49:E (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1777 1a49:F (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1778 1a49:F (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1779 1a49:F (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1780 1a49:G (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1781 1a49:G (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1782 1a49:G (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1783 1a49:H (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1784 1a49:H (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    1785 1a4a:A (1.89) BS01 CU ? GO:0005507 ... P00280 9520385
    1786 1a4a:B (1.89) BS01 CU ? GO:0005507 ... P00280 9520385
    1787 1a4b:A (1.91) BS01 CU ? GO:0005507 ... P00280 9520385
    1788 1a4b:B (1.91) BS01 CU ? GO:0005507 ... P00280 9520385
    1789 1a4c:A (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    1790 1a4c:B (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    1791 1a4c:C (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    1792 1a4c:C (2.45) BS02 NO3 ? GO:0005507 ... P00280 9520385
    1793 1a4c:D (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    1794 1a4c:D (2.45) BS02 NO3 ? GO:0005507 ... P00280 9520385
    1795 1a4e:A (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    1796 1a4e:A (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    1797 1a4e:B (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    1798 1a4e:B (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255
    1799 1a4e:C (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    1800 1a4e:C (2.4) BS02 HEM 1.11.1.6 GO:0000302 ... P15202 9931255

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).