SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180401 3qyy:B (1.9) BS02 C2E 2.7.7.65 N/A Q8P559 22120736 Manual survey: Ki=6.54uM (22120736)
    MOAD: Kd=8.26uM
    180402 3qyy:B (1.9) BS03 MG 2.7.7.65 N/A Q8P559 22120736 Manual survey: Ki=6.54uM (22120736)
    180403 3qyz:A (1.46) BS01 Z8B 2.7.11.24 GO:0000165 ... P63086 21904027
    180404 3qz1:A (3.0) BS01 HEM 1.14.14.16 GO:0004497 ... P00191 N/A
    180405 3qz1:A (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180406 3qz1:A (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180407 3qz1:B (3.0) BS01 HEM 1.14.14.16 GO:0004497 ... P00191 N/A
    180408 3qz1:B (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180409 3qz1:B (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180410 3qz1:C (3.0) BS01 HEM 1.14.14.16 GO:0004497 ... P00191 N/A
    180411 3qz1:C (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180412 3qz1:D (3.0) BS01 HEM 1.14.14.16 GO:0004497 ... P00191 N/A
    180413 3qz1:D (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180414 3qz1:D (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    180415 3qz2:A (3.2) BS01 ZN 3.4.24.56 GO:0001540 ... P14735 24735644
    180416 3qz2:B (3.2) BS01 ZN 3.4.24.56 GO:0001540 ... P14735 24735644
    180417 3qz5:A (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180418 3qz5:C (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180419 3qz5:E (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180420 3qz5:G (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180421 3qz7:A (1.998) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180422 3qz7:A (1.998) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180423 3qz7:A (1.998) BS03 DCP 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180424 3qz7:A (1.998) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180425 3qz7:A (1.998) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180426 3qz8:A (1.999) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180427 3qz8:A (1.999) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180428 3qz8:A (1.999) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180429 3qz8:A (1.999) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180430 3qz8:A (1.999) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180431 3qz8:A (1.999) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 21421759
    180432 3qz9:A (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180433 3qz9:C (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180434 3qz9:E (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180435 3qz9:G (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    180436 3qza:A (1.7) BS01 D8U 5.3.1.5 GO:0000287 ... P24300 21604345
    180437 3qzb:A (1.1) BS01 FE 1.15.1.2 GO:0005506 ... Q9WZC6 N/A
    180438 3qzc:A (2.85) BS01 ZN ? GO:0042597 ... P0AE85 21317318
    180439 3qzc:A (2.85) BS02 ZN ? GO:0042597 ... P0AE85 21317318
    180440 3qzc:B (2.85) BS01 ZN ? GO:0042597 ... P0AE85 21317318
    180441 3qzc:B (2.85) BS02 ZN ? GO:0042597 ... P0AE85 21317318
    180442 3qzf:A (2.0) BS01 X66 2.7.11.22 GO:0000082 ... P24941 N/A
    180443 3qzg:A (1.75) BS01 X67 2.7.11.22 GO:0000082 ... P24941 N/A
    180444 3qzh:A (1.95) BS01 X69 2.7.11.22 GO:0000082 ... P24941 N/A
    180445 3qzi:A (1.75) BS01 X72 2.7.11.22 GO:0000082 ... P24941 N/A
    180446 3qzl:A (1.3) BS01 HEM ? N/A Q7A655 21893067
    180447 3qzm:A (1.25) BS01 HEM ? N/A Q7A655 21893067
    180448 3qzm:B (1.25) BS01 HEM ? N/A Q7A655 21893067
    180449 3qzn:A (2.0) BS01 HEM ? N/A Q7A655 21893067
    180450 3qzn:B (2.0) BS01 HEM ? N/A Q7A655 21893067
    180451 3qzn:C (2.0) BS01 HEM ? N/A Q7A655 21893067
    180452 3qzo:A (1.952) BS01 HEM ? N/A Q7A655 21893067
    180453 3qzo:A (1.952) BS02 HEM ? N/A Q7A655 21893067
    180454 3qzo:B (1.952) BS01 HEM ? N/A Q7A655 21893067
    180455 3qzo:C (1.952) BS01 HEM ? N/A Q7A655 21893067
    180456 3qzo:C (1.952) BS02 HEM ? N/A Q7A655 21893067
    180457 3qzo:C (1.952) BS03 HEM ? N/A Q7A655 21893067
    180458 3qzo:D (1.952) BS01 HEM ? N/A Q7A655 21893067
    180459 3qzp:A (1.9) BS01 COH ? N/A Q7A655 21893067
    180460 3qzp:B (1.9) BS01 COH ? N/A Q7A655 21893067
    180461 3qzq:A (1.7001) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180462 3qzq:B (1.7001) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180463 3qzq:C (1.7001) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180464 3qzq:D (1.7001) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180465 3qzr:A (1.039) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180466 3qzr:B (1.039) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180467 3qzs:A (1.8) BS01 peptide ? GO:0006357 ... Q12830 21596426
    180468 3qzs:B (1.8) BS01 peptide ? GO:0006357 ... Q12830 21596426
    180469 3qzt:A (1.5) BS01 peptide ? GO:0006357 ... Q12830 21596426
    180470 3qzv:A (1.999) BS01 peptide ? GO:0006357 ... Q12830 21596426
    180471 3qzv:A (1.999) BS02 ZN ? GO:0006357 ... Q12830 21596426
    180472 3qzv:A (1.999) BS03 ZN ? GO:0006357 ... Q12830 21596426
    180473 3qzw:A (2.798) BS01 peptide ? N/A P04439 21645925
    180474 3qzw:D (2.798) BS01 peptide ? N/A P04439 21645925
    180475 3qzx:A (1.3) BS01 HEM ? GO:0019825 ... Q8TLY9 21618401
    180476 3qzy:A (2.14) BS01 FAD 1.8.3.2 GO:0016491 ... P41480 21752922
    180477 3qzy:B (2.14) BS01 FAD 1.8.3.2 GO:0016491 ... P41480 21752922
    180478 3qzz:A (2.4) BS01 HEM ? GO:0019825 ... Q8TLY9 21618401
    180479 3r00:A (2.1) BS01 UNJ 2.7.11.1 GO:0004672 ... P11309 21507633 MOAD: ic50=8.5uM
    BindingDB: IC50=9000nM
    180480 3r01:A (2.6) BS01 UNE 2.7.11.1 GO:0004672 ... P11309 21507633 BindingDB: IC50=6000nM
    180481 3r02:A (1.95) BS01 UNM 2.7.11.1 GO:0004672 ... P11309 21507633 MOAD: ic50=0.001uM
    BindingDB: IC50=1nM
    180482 3r03:A (2.491) BS01 ADP 3.6.1.55 GO:0006281 ... Q2RXE7 N/A
    180483 3r04:A (1.7) BS01 UNQ 2.7.11.1 GO:0004672 ... P11309 21507633 MOAD: ic50=0.12uM
    BindingDB: IC50=120nM
    180484 3r09:A (2.2) BS01 MG ? N/A Q4K5L5 N/A
    180485 3r0d:A (1.501) BS01 PXN 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 N/A
    180486 3r0d:A (1.501) BS02 ZN 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 N/A
    180487 3r0d:A (1.501) BS03 ZN 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 N/A
    180488 3r0f:A (1.3083) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180489 3r0f:B (1.3083) BS01 AG7 ? GO:0003723 ... E7E815 21813612
    180490 3r0g:A (2.2) BS01 HEM ? GO:0019825 ... Q8TLY9 21618401
    180491 3r0g:B (2.2) BS01 HEM ? GO:0019825 ... Q8TLY9 21618401
    180492 3r0h:A (2.6) BS01 peptide ? N/A Q24008 21703451
    180493 3r0h:A (2.6) BS02 peptide ? N/A Q24008 21703451
    180494 3r0h:B (2.6) BS01 peptide ? N/A Q24008 21703451
    180495 3r0h:C (2.6) BS01 peptide ? N/A Q24008 21703451
    180496 3r0h:C (2.6) BS02 peptide ? N/A Q24008 21703451
    180497 3r0h:C (2.6) BS03 peptide ? N/A Q24008 21703451
    180498 3r0h:D (2.6) BS01 peptide ? N/A Q24008 21703451
    180499 3r0h:D (2.6) BS02 peptide ? N/A Q24008 21703451
    180500 3r0h:E (2.6) BS01 peptide ? N/A Q24008 21703451
    180501 3r0h:E (2.6) BS02 peptide ? N/A Q24008 21703451
    180502 3r0h:F (2.6) BS01 peptide ? N/A Q24008 21703451
    180503 3r0h:F (2.6) BS02 peptide ? N/A Q24008 21703451
    180504 3r0h:G (2.6) BS01 peptide ? N/A Q24008 21703451
    180505 3r0h:G (2.6) BS02 peptide ? N/A Q24008 21703451
    180506 3r0h:H (2.6) BS01 peptide ? N/A Q24008 21703451
    180507 3r0h:H (2.6) BS02 peptide ? N/A Q24008 21703451
    180508 3r0i:A (2.1) BS01 MN 1.1.1.267 GO:0008299 ... P45568 21866890
    180509 3r0i:A (2.1) BS02 C0K 1.1.1.267 GO:0008299 ... P45568 21866890 MOAD: ic50=0.12uM
    180510 3r0i:B (2.1) BS01 MN 1.1.1.267 GO:0008299 ... P45568 21866890
    180511 3r0i:B (2.1) BS02 C0K 1.1.1.267 GO:0008299 ... P45568 21866890 MOAD: ic50=0.12uM
    180512 3r0l:A (1.35) BS01 peptide ? GO:0004623 ... P08878 21787789
    180513 3r0l:D (1.35) BS01 MN 3.1.1.4 GO:0004623 ... P0CG56 21787789
    180514 3r0q:A (2.61) BS01 SAH 2.1.1.319 GO:0005634 ... Q9MAT5 21986201
    180515 3r0q:C (2.61) BS01 SAH 2.1.1.319 GO:0005634 ... Q9MAT5 21986201
    180516 3r0q:E (2.61) BS01 SAH 2.1.1.319 GO:0005634 ... Q9MAT5 21986201
    180517 3r0q:G (2.61) BS01 SAH 2.1.1.319 GO:0005634 ... Q9MAT5 21986201
    180518 3r0r:A (2.35) BS01 SO4 ? GO:0019069 ... Q805N7 21632760
    180519 3r0r:A (2.35) BS02 SO4 ? GO:0019069 ... Q805N7 21632760
    180520 3r0t:A (1.75) BS01 FU9 2.7.11.1 GO:0004672 ... P68400 21870818 MOAD: ic50=0.91nM
    BindingDB: IC50=>750nM
    180521 3r0u:A (1.9) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180522 3r0u:A (1.9) BS02 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180523 3r0w:A (1.7) BS01 RSY 3.1.26.13 GO:0004190 ... Q000H7 22469467 MOAD: ic50=30.3uM
    180524 3r0w:B (1.7) BS01 RSY 3.1.26.13 GO:0004190 ... Q000H7 22469467
    180525 3r0x:A (1.93) BS01 NA 4.3.1.18 GO:0006520 ... Q8ZL08 21668644
    180526 3r0y:A (1.65) BS01 RSZ 3.1.26.13 GO:0004190 ... Q000H7 22469467 MOAD: ic50=14.53uM
    180527 3r0y:B (1.65) BS01 RSZ 3.1.26.13 GO:0004190 ... Q000H7 22469467
    180528 3r10:A (2.0) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180529 3r11:A (2.0) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180530 3r11:B (2.0) BS01 FUM 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180531 3r16:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21620713
    180532 3r16:A (1.6) BS02 5UN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21620713 MOAD: Ki=50nM
    BindingDB: Ki=50nM
    180533 3r17:B (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21620713
    180534 3r17:B (1.7) BS02 5UM 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21620713 MOAD: Ki=390nM
    BindingDB: Ki=390nM
    180535 3r1a:A (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180536 3r1a:A (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180537 3r1a:B (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180538 3r1a:B (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180539 3r1a:C (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180540 3r1a:C (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180541 3r1a:D (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180542 3r1a:D (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180543 3r1a:E (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180544 3r1a:E (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180545 3r1a:F (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180546 3r1a:F (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180547 3r1a:G (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180548 3r1a:G (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180549 3r1a:H (3.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180550 3r1a:H (3.5) BS02 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180551 3r1b:A (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    180552 3r1b:A (3.0) BS02 FRU 1.14.14.1 GO:0004497 ... P00178 21510666
    180553 3r1b:A (3.0) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180554 3r1b:A (3.0) BS04 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180555 3r1b:A (3.0) BS05 CM5 1.14.14.1 GO:0004497 ... P00178 21510666
    180556 3r1b:A (3.0) BS06 CM5 1.14.14.1 GO:0004497 ... P00178 21510666
    180557 3r1b:B (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    180558 3r1b:B (3.0) BS02 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180559 3r1b:B (3.0) BS03 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180560 3r1b:B (3.0) BS04 CM5 1.14.14.1 GO:0004497 ... P00178 21510666
    180561 3r1b:B (3.0) BS05 CM5 1.14.14.1 GO:0004497 ... P00178 21510666
    180562 3r1b:C (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    180563 3r1b:C (3.0) BS02 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180564 3r1b:C (3.0) BS03 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180565 3r1b:D (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    180566 3r1b:D (3.0) BS02 FRU 1.14.14.1 GO:0004497 ... P00178 21510666
    180567 3r1b:D (3.0) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 21510666
    180568 3r1b:D (3.0) BS04 TB2 1.14.14.1 GO:0004497 ... P00178 21510666
    180569 3r1b:D (3.0) BS05 CM5 1.14.14.1 GO:0004497 ... P00178 21510666
    180570 3r1h:A (3.15) BS01 rna ? GO:0003676 ... P09012 21857665
    180571 3r1h:D (3.15) BS01 rna ? GO:0003676 ... P09012 21857665
    180572 3r1j:A (2.05) BS01 FE 1.14.11.17 GO:0005737 ... A0A0H2ZSG9 25613812
    180573 3r1j:B (2.05) BS01 FE 1.14.11.17 GO:0005737 ... A0A0H2ZSG9 25613812
    180574 3r1k:A (1.95) BS01 COA 2.3.1.- GO:0005576 ... P9WFK7 21628583
    180575 3r1l:A (3.125) BS01 rna ? GO:0003676 ... P09012 21857665
    180576 3r1l:D (3.125) BS01 rna ? GO:0003676 ... P09012 21857665
    180577 3r1m:A (1.5) BS01 MG 3.1.3.11
    4.1.2.13
    GO:0000287 ... F9VMT6 21983966
    180578 3r1m:A (1.5) BS02 MG 3.1.3.11
    4.1.2.13
    GO:0000287 ... F9VMT6 21983966
    180579 3r1m:A (1.5) BS03 MG 3.1.3.11
    4.1.2.13
    GO:0000287 ... F9VMT6 21983966
    180580 3r1n:A (2.09) BS01 05B 2.7.11.1 GO:0004672 ... Q16644 21565500
    180581 3r1q:A (1.85) BS01 X75 2.7.11.22 GO:0000082 ... P24941 N/A
    180582 3r1r:A (3.0) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    180583 3r1r:A (3.0) BS02 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    180584 3r1r:A (3.0) BS03 ATP 1.17.4.1 GO:0004748 ... P00452 9309223
    180585 3r1r:B (3.0) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    180586 3r1r:B (3.0) BS02 ATP 1.17.4.1 GO:0004748 ... P00452 9309223
    180587 3r1r:C (3.0) BS01 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    180588 3r1r:C (3.0) BS02 peptide 1.17.4.1 GO:0004748 ... P00452 9309223
    180589 3r1r:C (3.0) BS03 ATP 1.17.4.1 GO:0004748 ... P00452 9309223
    180590 3r1s:A (1.8) BS01 X73 2.7.11.22 GO:0000082 ... P24941 N/A
    180591 3r1v:A (2.19) BS01 AZB ? GO:0005549 ... Q7PXT9 22019737 MOAD: Kd=0.12uM
    180592 3r1v:B (2.19) BS01 AZB ? GO:0005549 ... Q7PXT9 22019737 MOAD: Kd=0.12uM
    180593 3r1y:A (1.8) BS01 X76 2.7.11.22 GO:0000082 ... P24941 N/A
    180594 3r1z:A (1.9) BS01 ALA 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180595 3r1z:A (1.9) BS02 GLU 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180596 3r1z:B (1.9) BS01 ALA 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180597 3r1z:B (1.9) BS02 DGL 5.1.1.- GO:0000287 ... B0TZW0 22392983
    180598 3r21:A (2.9) BS01 D36 2.7.11.1 GO:0000212 ... O14965 21798738 BindingDB: IC50=180nM
    180599 3r22:A (2.9) BS01 D37 2.7.11.1 GO:0000212 ... O14965 21798738 BindingDB: IC50=17nM
    180600 3r24:A (2.0) BS01 SAM 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0C6X7 22022266

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).