SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    18801 1h4j:E (3.0) BS01 PQQ 1.1.2.7 GO:0003824 ... P16027 11502173
    18802 1h4j:E (3.0) BS02 CA 1.1.2.7 GO:0003824 ... P16027 11502173
    18803 1h4j:G (3.0) BS01 PQQ 1.1.2.7 GO:0003824 ... P16027 11502173
    18804 1h4j:G (3.0) BS02 CA 1.1.2.7 GO:0003824 ... P16027 11502173
    18805 1h4k:X (2.05) BS01 PO2 2.8.1.1 GO:0004792 ... P52197 11592406
    18806 1h4n:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9398308
    18807 1h4p:A (1.75) BS01 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    18808 1h4p:A (1.75) BS02 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    18809 1h4q:A (3.0) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18810 1h4q:A (3.0) BS02 ATP 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18811 1h4q:A (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18812 1h4q:A (3.0) BS04 PRI 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18813 1h4q:B (3.0) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18814 1h4q:B (3.0) BS02 ATP 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18815 1h4q:B (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18816 1h4q:B (3.0) BS04 PRI 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18817 1h4s:A (2.85) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18818 1h4s:A (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18819 1h4s:A (2.85) BS03 P5A 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18820 1h4s:B (2.85) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18821 1h4s:B (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18822 1h4s:B (2.85) BS03 P5A 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18823 1h4t:A (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18824 1h4t:A (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18825 1h4t:B (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18826 1h4t:B (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18827 1h4t:C (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18828 1h4t:C (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18829 1h4t:D (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18830 1h4t:D (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    18831 1h4w:A (1.7) BS01 BEN 3.4.21.4 GO:0004252 ... P35030 11827488 MOAD: Ki=22uM
    18832 1h4w:A (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35030 11827488
    18833 1h50:A (1.5) BS01 FMN ? GO:0005829 ... P71278 11428899
    18834 1h51:A (1.6) BS01 FMN ? GO:0005829 ... P71278 11428899
    18835 1h52:A (2.0) BS01 POP 3.1.27.- GO:0001525 ... P03950 11468363
    18836 1h53:A (2.0) BS01 PO4 3.1.27.- GO:0001525 ... P03950 11468363
    18837 1h54:B (2.15) BS01 PO4 2.4.1.8 GO:0003824 ... Q7SIE1 11587643
    18838 1h55:A (1.61) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18839 1h55:A (1.61) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18840 1h55:A (1.61) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18841 1h55:A (1.61) BS04 O 1.11.1.7 GO:0004601 ... P00433 12024218
    18842 1h56:A (3.0) BS01 MG 3.1.21.4 GO:0009036 ... P23657 12888347
    18843 1h56:B (3.0) BS01 MG 3.1.21.4 GO:0009036 ... P23657 12888347
    18844 1h57:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18845 1h57:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18846 1h57:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18847 1h57:A (1.6) BS04 OXY 1.11.1.7 GO:0004601 ... P00433 12024218
    18848 1h58:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18849 1h58:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18850 1h58:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18851 1h5a:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18852 1h5a:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18853 1h5a:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18854 1h5c:A (1.62) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18855 1h5c:A (1.62) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18856 1h5c:A (1.62) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18857 1h5d:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18858 1h5d:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18859 1h5d:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18860 1h5e:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18861 1h5e:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18862 1h5e:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18863 1h5f:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18864 1h5f:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18865 1h5f:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18866 1h5g:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18867 1h5g:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18868 1h5g:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18869 1h5h:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18870 1h5h:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18871 1h5h:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18872 1h5i:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18873 1h5i:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18874 1h5i:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18875 1h5j:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18876 1h5j:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18877 1h5j:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18878 1h5k:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18879 1h5k:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18880 1h5k:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18881 1h5l:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18882 1h5l:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18883 1h5l:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18884 1h5m:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    18885 1h5m:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18886 1h5m:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    18887 1h5n:A (2.0) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18888 1h5n:A (2.0) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18889 1h5n:A (2.0) BS03 SO4 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18890 1h5n:C (2.0) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18891 1h5n:C (2.0) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18892 1h5n:C (2.0) BS03 SO4 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    18893 1h5q:A (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18894 1h5q:B (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18895 1h5q:C (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18896 1h5q:D (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18897 1h5q:E (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18898 1h5q:F (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18899 1h5q:G (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18900 1h5q:H (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18901 1h5q:I (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18902 1h5q:J (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18903 1h5q:K (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18904 1h5q:L (1.5) BS01 NAP 1.1.1.138 GO:0016616 ... O93868 11335726
    18905 1h5r:A (1.9) BS01 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18906 1h5r:A (1.9) BS02 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18907 1h5r:A (1.9) BS03 G1P 2.7.7.24 GO:0000271 ... P37744 11697907
    18908 1h5r:B (1.9) BS01 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18909 1h5r:B (1.9) BS02 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18910 1h5r:B (1.9) BS03 G1P 2.7.7.24 GO:0000271 ... P37744 11697907
    18911 1h5r:C (1.9) BS01 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18912 1h5r:C (1.9) BS02 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18913 1h5r:C (1.9) BS03 G1P 2.7.7.24 GO:0000271 ... P37744 11697907
    18914 1h5r:D (1.9) BS01 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18915 1h5r:D (1.9) BS02 THM 2.7.7.24 GO:0000271 ... P37744 11697907
    18916 1h5r:D (1.9) BS03 G1P 2.7.7.24 GO:0000271 ... P37744 11697907
    18917 1h5s:A (2.3) BS01 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18918 1h5s:A (2.3) BS02 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18919 1h5s:A (2.3) BS03 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18920 1h5s:B (2.3) BS01 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18921 1h5s:B (2.3) BS02 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18922 1h5s:B (2.3) BS03 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18923 1h5s:C (2.3) BS01 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18924 1h5s:C (2.3) BS02 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18925 1h5s:C (2.3) BS03 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18926 1h5s:D (2.3) BS01 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18927 1h5s:D (2.3) BS02 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18928 1h5s:D (2.3) BS03 TMP 2.7.7.24 GO:0000271 ... P37744 11697907
    18929 1h5t:A (1.9) BS01 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18930 1h5t:A (1.9) BS02 DAU 2.7.7.24 GO:0000271 ... P37744 11697907
    18931 1h5t:A (1.9) BS03 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18932 1h5t:B (1.9) BS01 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18933 1h5t:B (1.9) BS02 DAU 2.7.7.24 GO:0000271 ... P37744 11697907
    18934 1h5t:B (1.9) BS03 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18935 1h5t:C (1.9) BS01 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18936 1h5t:C (1.9) BS02 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18937 1h5t:C (1.9) BS03 DAU 2.7.7.24 GO:0000271 ... P37744 11697907
    18938 1h5t:D (1.9) BS01 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18939 1h5t:D (1.9) BS02 TYD 2.7.7.24 GO:0000271 ... P37744 11697907
    18940 1h5t:D (1.9) BS03 DAU 2.7.7.24 GO:0000271 ... P37744 11697907
    18941 1h5u:A (1.76) BS01 CHI 2.4.1.1 GO:0004645 ... P00489 11886794 MOAD: ic50=178nM
    18942 1h5u:A (1.76) BS02 GLC 2.4.1.1 GO:0004645 ... P00489 11886794
    18943 1h5u:A (1.76) BS03 PLP 2.4.1.1 GO:0004645 ... P00489 11886794
    18944 1h5v:A (1.1) BS01 MA3 3.2.1.4 GO:0000272 ... O85465 11679762
    18945 1h5v:A (1.1) BS02 SGC 3.2.1.4 GO:0000272 ... O85465 11679762
    18946 1h5v:A (1.1) BS03 SSG 3.2.1.4 GO:0000272 ... O85465 11679762
    18947 1h5v:A (1.1) BS04 GLC 3.2.1.4 GO:0000272 ... O85465 11679762
    18948 1h5v:A (1.1) BS05 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    18949 1h5v:A (1.1) BS06 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    18950 1h5v:A (1.1) BS07 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    18951 1h5x:A (1.9) BS01 IM2 3.5.2.6 GO:0005886 ... Q51400 N/A
    18952 1h5x:B (1.9) BS01 IM2 3.5.2.6 GO:0005886 ... Q51400 N/A
    18953 1h5y:A (2.0) BS01 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18954 1h5y:A (2.0) BS02 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18955 1h5y:A (2.0) BS03 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18956 1h5y:A (2.0) BS04 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18957 1h5y:B (2.0) BS01 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18958 1h5y:B (2.0) BS02 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18959 1h5y:B (2.0) BS03 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18960 1h5y:B (2.0) BS04 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    18961 1h5z:A (2.05) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 15530358
    18962 1h60:A (1.6) BS01 FMN ? GO:0005829 ... P71278 11428899
    18963 1h60:A (1.6) BS02 STR ? GO:0005829 ... P71278 11428899 MOAD: Kd=20uM
    18964 1h61:A (1.4) BS01 FMN ? GO:0005829 ... P71278 11428899
    18965 1h61:A (1.4) BS02 PDN ? GO:0005829 ... P71278 11428899 MOAD: Kd=13uM
    18966 1h62:A (1.9) BS01 ANB ? GO:0005829 ... P71278 11428899 MOAD: Kd=17uM
    18967 1h62:A (1.9) BS02 FMN ? GO:0005829 ... P71278 11428899
    18968 1h63:A (1.62) BS01 FMN ? GO:0005829 ... P71278 11428899
    18969 1h65:A (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    18970 1h65:A (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    18971 1h65:B (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    18972 1h65:B (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    18973 1h65:B (2.0) BS03 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    18974 1h65:C (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    18975 1h65:C (2.0) BS02 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    18976 1h65:C (2.0) BS03 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    18977 1h66:A (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18978 1h66:A (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18979 1h66:A (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18980 1h66:A (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18981 1h66:B (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18982 1h66:B (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18983 1h66:B (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18984 1h66:B (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18985 1h66:C (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18986 1h66:C (2.0) BS02 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18987 1h66:C (2.0) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18988 1h66:D (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18989 1h66:D (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18990 1h66:D (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    18991 1h66:D (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18992 1h68:A (2.1) BS01 RET ? GO:0005216 ... P42196 11504917
    18993 1h68:A (2.1) BS02 CL ? GO:0005216 ... P42196 11504917
    18994 1h69:A (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18995 1h69:A (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    18996 1h69:A (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18997 1h69:A (1.86) BS04 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    18998 1h69:B (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    18999 1h69:B (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    19000 1h69:B (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).