SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197801 3wa2:X (1.08) BS03 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197802 3wa2:X (1.08) BS04 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197803 3wa2:X (1.08) BS05 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197804 3wa2:X (1.08) BS06 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197805 3wa2:X (1.08) BS07 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197806 3wa2:X (1.08) BS08 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197807 3wa2:X (1.08) BS09 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197808 3wa2:X (1.08) BS10 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    197809 3wa2:X (1.08) BS11 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    197810 3wa2:X (1.08) BS12 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    197811 3wa2:X (1.08) BS13 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    197812 3wa3:A (1.55) BS01 CU 1.4.3.21 GO:0005507 ... P46881 24311589
    197813 3wa3:B (1.55) BS01 CU 1.4.3.21 GO:0005507 ... P46881 24311589
    197814 3wa4:A (1.35) BS01 peptide ? N/A P62993 24098653
    197815 3wa5:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... Q9HYC5 24100309
    197816 3wa5:A (1.9) BS02 CA 3.2.1.17 GO:0003796 ... Q9HYC5 24100309
    197817 3wa5:A (1.9) BS03 CA 3.2.1.17 GO:0003796 ... Q9HYC5 24100309
    197818 3wa7:A (1.7) BS01 GOL 3.1.1.20 N/A B3Y018 23836494
    197819 3wa9:A (3.07) BS01 dna ? GO:0000786 ... P68431 24311584
    197820 3wa9:A (3.07) BS02 dna ? GO:0000786 ... P68431 24311584
    197821 3wa9:B (3.07) BS01 dna ? GO:0000781 ... P62805 24311584
    197822 3wa9:B (3.07) BS02 dna ? GO:0000781 ... P62805 24311584
    197823 3wa9:C (3.07) BS01 dna ? GO:0000786 ... P0C0S5 24311584
    197824 3wa9:C (3.07) BS02 dna ? GO:0000786 ... P0C0S5 24311584
    197825 3wa9:D (3.07) BS01 dna ? GO:0000786 ... P06899 24311584
    197826 3wa9:D (3.07) BS02 dna ? GO:0000786 ... P06899 24311584
    197827 3wa9:E (3.07) BS01 dna ? GO:0000786 ... P68431 24311584
    197828 3wa9:E (3.07) BS02 dna ? GO:0000786 ... P68431 24311584
    197829 3wa9:F (3.07) BS01 dna ? GO:0000781 ... P62805 24311584
    197830 3wa9:F (3.07) BS02 dna ? GO:0000781 ... P62805 24311584
    197831 3wa9:G (3.07) BS01 dna ? GO:0000786 ... P0C0S5 24311584
    197832 3wa9:G (3.07) BS02 dna ? GO:0000786 ... P0C0S5 24311584
    197833 3wa9:H (3.07) BS01 dna ? GO:0000786 ... P06899 24311584
    197834 3wa9:H (3.07) BS02 dna ? GO:0000786 ... P06899 24311584
    197835 3waa:A (3.2) BS01 dna ? GO:0000786 ... P68431 24311584
    197836 3waa:A (3.2) BS02 dna ? GO:0000786 ... P68431 24311584
    197837 3waa:B (3.2) BS01 dna ? GO:0000781 ... P62805 24311584
    197838 3waa:C (3.2) BS01 dna ? GO:0000786 ... Q71UI9 24311584
    197839 3waa:C (3.2) BS02 dna ? GO:0000786 ... Q71UI9 24311584
    197840 3waa:D (3.2) BS01 dna ? GO:0000786 ... P06899 24311584
    197841 3waa:D (3.2) BS02 dna ? GO:0000786 ... P06899 24311584
    197842 3waa:E (3.2) BS01 dna ? GO:0000786 ... P68431 24311584
    197843 3waa:E (3.2) BS02 dna ? GO:0000786 ... P68431 24311584
    197844 3waa:F (3.2) BS01 dna ? GO:0000781 ... P62805 24311584
    197845 3waa:F (3.2) BS02 dna ? GO:0000781 ... P62805 24311584
    197846 3waa:G (3.2) BS01 dna ? GO:0000786 ... Q71UI9 24311584
    197847 3waa:G (3.2) BS02 dna ? GO:0000786 ... Q71UI9 24311584
    197848 3waa:H (3.2) BS01 dna ? GO:0000786 ... P06899 24311584
    197849 3waa:H (3.2) BS02 dna ? GO:0000786 ... P06899 24311584
    197850 3wab:A (2.154) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 24010887
    197851 3wab:A (2.154) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 24010887
    197852 3wab:A (2.154) BS03 DDW 3.4.17.2 GO:0004181 ... P09955 24010887 BindingDB: IC50=3.6nM
    197853 3wab:A (2.154) BS04 ZN 3.4.17.2 GO:0004181 ... P09955 24010887
    197854 3wad:A (2.0) BS01 MG ? GO:0008194 ... Q76KZ6 N/A
    197855 3wae:A (1.7) BS01 FE ? N/A Q5SHV2 24419392
    197856 3wae:A (1.7) BS02 BCT ? N/A Q5SHV2 24419392
    197857 3wae:A (1.7) BS03 BCT ? N/A Q5SHV2 24419392
    197858 3wae:B (1.7) BS01 FE ? N/A Q5SHV2 24419392
    197859 3wae:B (1.7) BS02 BCT ? N/A Q5SHV2 24419392
    197860 3wae:B (1.7) BS03 BCT ? N/A Q5SHV2 24419392
    197861 3wag:A (2.1) BS01 TYD ? GO:0008194 ... Q76KZ6 N/A
    197862 3wag:A (2.1) BS02 MG ? GO:0008194 ... Q76KZ6 N/A
    197863 3wag:B (2.1) BS01 TYD ? GO:0008194 ... Q76KZ6 N/A
    197864 3wah:A (1.54) BS01 MH0 ? N/A G3XD33 24604808
    197865 3wah:A (1.54) BS02 MH0 ? N/A G3XD33 24604808
    197866 3wah:B (1.54) BS01 MH0 ? N/A G3XD33 24604808
    197867 3waj:A (2.501) BS01 ZN 2.4.99.21 GO:0004576 ... O29867 24127570
    197868 3waj:A (2.501) BS02 SO4 2.4.99.21 GO:0004576 ... O29867 24127570
    197869 3wak:A (3.413) BS01 MN 2.4.99.21 GO:0004576 ... O29867 24127570
    197870 3waq:A (1.8) BS01 FEO ? GO:0046872 ... Q726F3 24187962
    197871 3war:A (1.04) BS01 NIO 2.7.11.1 GO:0004672 ... P68400 24121351
    197872 3was:A (1.5) BS01 BGC 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197873 3was:A (1.5) BS02 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197874 3was:A (1.5) BS03 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197875 3was:A (1.5) BS04 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197876 3was:B (1.5) BS01 BGC 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197877 3was:B (1.5) BS02 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197878 3was:B (1.5) BS03 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197879 3was:B (1.5) BS04 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197880 3wat:A (1.6) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197881 3wat:A (1.6) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197882 3wat:A (1.6) BS03 BGC 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197883 3wat:A (1.6) BS04 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197884 3wat:B (1.6) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197885 3wat:B (1.6) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197886 3wat:B (1.6) BS03 BGC 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197887 3wat:B (1.6) BS04 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197888 3wau:A (1.7) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197889 3wau:A (1.7) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197890 3wau:A (1.7) BS03 M1P 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197891 3wau:B (1.7) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197892 3wau:B (1.7) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197893 3wau:B (1.7) BS03 M1P 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    197894 3wav:A (1.797) BS01 MAN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197895 3wav:A (1.797) BS02 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197896 3wav:A (1.797) BS03 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197897 3wav:A (1.797) BS04 CA 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197898 3wav:A (1.797) BS05 DWV 3.1.4.39 GO:0001953 ... Q9R1E6 23688339 MOAD: ic50=180nM
    BindingDB: IC50=180nM
    197899 3waw:A (1.954) BS01 MAN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197900 3waw:A (1.954) BS02 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197901 3waw:A (1.954) BS03 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197902 3waw:A (1.954) BS04 CA 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197903 3waw:A (1.954) BS05 DWW 3.1.4.39 GO:0001953 ... Q9R1E6 23688339 MOAD: ic50=580nM
    BindingDB: IC50=580nM
    197904 3wax:A (1.899) BS01 MAN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197905 3wax:A (1.899) BS02 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197906 3wax:A (1.899) BS03 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197907 3wax:A (1.899) BS04 CA 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197908 3wax:A (1.899) BS05 DWX 3.1.4.39 GO:0001953 ... Q9R1E6 23688339 MOAD: ic50=13nM
    BindingDB: IC50=13nM
    197909 3way:A (1.746) BS01 MAN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197910 3way:A (1.746) BS02 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197911 3way:A (1.746) BS03 ZN 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197912 3way:A (1.746) BS04 CA 3.1.4.39 GO:0001953 ... Q9R1E6 23688339
    197913 3way:A (1.746) BS05 DWY 3.1.4.39 GO:0001953 ... Q9R1E6 23688339 BindingDB: IC50=22nM
    197914 3waz:A (3.0) BS01 dna ? N/A Q9V2B6 24458096
    197915 3waz:A (3.0) BS02 dna ? N/A Q9V2B6 24458096
    197916 3waz:A (3.0) BS03 ADE ? N/A Q9V2B6 24458096
    197917 3waz:B (3.0) BS01 dna ? N/A Q9V2B6 24458096
    197918 3waz:B (3.0) BS02 dna ? N/A Q9V2B6 24458096
    197919 3waz:B (3.0) BS03 ADE ? N/A Q9V2B6 24458096
    197920 3wb0:A (1.91) BS01 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197921 3wb0:A (1.91) BS02 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197922 3wb0:B (1.91) BS01 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197923 3wb0:B (1.91) BS02 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197924 3wb0:C (1.91) BS01 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197925 3wb0:C (1.91) BS02 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197926 3wb0:D (1.91) BS01 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197927 3wb0:D (1.91) BS02 FEG 2.7.7.- GO:0160298 ... Q57912 24249552
    197928 3wb2:A (2.44) BS01 YGP ? GO:0160298 ... Q57912 24249552
    197929 3wb2:A (2.44) BS02 YGP ? GO:0160298 ... Q57912 24249552
    197930 3wb2:A (2.44) BS03 GDP ? GO:0160298 ... Q57912 24249552
    197931 3wb2:B (2.44) BS01 YGP ? GO:0160298 ... Q57912 24249552
    197932 3wb2:B (2.44) BS02 YGP ? GO:0160298 ... Q57912 24249552
    197933 3wb2:C (2.44) BS01 YGP ? GO:0160298 ... Q57912 24249552
    197934 3wb2:C (2.44) BS02 YGP ? GO:0160298 ... Q57912 24249552
    197935 3wb2:D (2.44) BS01 YGP ? GO:0160298 ... Q57912 24249552
    197936 3wb2:D (2.44) BS02 YGP ? GO:0160298 ... Q57912 24249552
    197937 3wb4:A (2.25) BS01 0B3 3.4.23.46 GO:0004190 ... P56817 24051074 MOAD: Kd=36.6uM
    BindingDB: IC50=34000nM
    197938 3wb5:A (2.501) BS01 0B4 3.4.23.46 GO:0004190 ... P56817 24051074 MOAD: Kd=26.8uM
    197939 3wba:A (1.9) BS01 GLC 3.2.1.21 GO:0004553 ... Q8L7J2 23811195
    197940 3wbb:A (1.93) BS01 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197941 3wbb:B (1.93) BS01 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197942 3wbb:C (1.93) BS01 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197943 3wbd:A (1.8) BS01 SIA N/A N/A N/A 24100042
    197944 3wbd:A (1.8) BS02 SIA N/A N/A N/A 24100042
    197945 3wbd:A (1.8) BS03 SIA N/A N/A N/A 24100042
    197946 3wbd:B (1.8) BS01 SIA N/A N/A N/A 24100042
    197947 3wbd:B (1.8) BS02 SIA N/A N/A N/A 24100042
    197948 3wbd:B (1.8) BS03 SIA N/A N/A N/A 24100042
    197949 3wbe:A (1.97) BS01 GLC 3.2.1.21 GO:0004553 ... Q8L7J2 23811195
    197950 3wbf:A (2.12) BS01 API 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197951 3wbf:A (2.12) BS02 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197952 3wbf:B (2.12) BS01 API 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197953 3wbf:B (2.12) BS02 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197954 3wbf:C (2.12) BS01 API 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197955 3wbf:C (2.12) BS02 NAP 1.4.1.16 GO:0000166 ... Q67PI3 24339368
    197956 3wbg:A (2.15) BS01 2AN ? GO:0005319 ... P05413 24121341
    197957 3wbg:B (2.15) BS01 2AN ? GO:0005319 ... P05413 24121341
    197958 3wbg:C (2.15) BS01 2AN ? GO:0005319 ... P05413 24121341
    197959 3wbg:D (2.15) BS01 2AN ? GO:0005319 ... P05413 24121341
    197960 3wbh:A (2.1) BS01 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197961 3wbh:A (2.1) BS02 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197962 3wbh:A (2.1) BS03 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197963 3wbh:A (2.1) BS04 ZN 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197964 3wbh:A (2.1) BS05 ZN 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197965 3wbh:A (2.1) BS06 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197966 3wbh:B (2.1) BS01 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197967 3wbh:B (2.1) BS02 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197968 3wbh:B (2.1) BS03 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197969 3wbh:B (2.1) BS04 MG 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197970 3wbh:B (2.1) BS05 ZN 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197971 3wbh:B (2.1) BS06 ZN 3.1.3.1 GO:0016791 ... B5BP20 24598750
    197972 3wbk:A (3.3) BS01 peptide 3.6.5.3 GO:0003924 ... P39730 25478828
    197973 3wbl:A (2.0) BS01 PDY 2.7.11.22 GO:0000082 ... P24941 24121337 MOAD: ic50=23uM
    BindingDB: IC50=23000nM
    197974 3wbm:A (2.0) BS01 rna 3.1.-.- GO:0003676 ... P60848 24307170
    197975 3wbm:B (2.0) BS01 rna 3.1.-.- GO:0003676 ... P60848 24307170
    197976 3wbm:C (2.0) BS01 rna 3.1.-.- GO:0003676 ... P60848 24307170
    197977 3wbn:A (2.45) BS01 peptide ? GO:0005886 ... Q8U2X0 23535598
    197978 3wbw:A (1.85) BS01 NDP 1.1.1.- GO:0016491 ... Q5FT75 N/A
    197979 3wbw:B (1.85) BS01 NDP 1.1.1.- GO:0016491 ... Q5FT75 N/A
    197980 3wby:A (3.2) BS01 NDP 1.1.1.- GO:0016491 ... Q5FT75 N/A
    197981 3wby:A (3.2) BS02 NDP 1.1.1.- GO:0016491 ... Q5FT75 N/A
    197982 3wby:B (3.2) BS01 NDP 1.1.1.- GO:0016491 ... Q5FT75 N/A
    197983 3wbz:A (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    197984 3wbz:A (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    197985 3wbz:A (2.392) BS03 MG N/A GO:0000287 ... N/A 24324136
    197986 3wbz:A (2.392) BS04 MG N/A GO:0000287 ... N/A 24324136
    197987 3wbz:A (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    197988 3wbz:B (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    197989 3wbz:B (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    197990 3wbz:B (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136
    197991 3wbz:B (2.392) BS04 MG N/A GO:0000287 ... N/A 24324136
    197992 3wbz:B (2.392) BS05 MG N/A GO:0000287 ... N/A 24324136
    197993 3wbz:C (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    197994 3wbz:C (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    197995 3wbz:C (2.392) BS03 MG N/A GO:0000287 ... N/A 24324136
    197996 3wbz:C (2.392) BS04 MG N/A GO:0000287 ... N/A 24324136
    197997 3wbz:C (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    197998 3wbz:D (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    197999 3wbz:D (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    198000 3wbz:D (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).