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Template Library for Protein Structure and Function Prediction

(last update: 2024/04/09)

Template library files needed for the I-TASSER, MUSTER, SEGMER, and LOMETS programs. All libraries are weekly updated.

• PDB (~2099MB): non-redundant protein structures from PDB (for I-TASSER, LOMETS, MUSTER and SEGMER).
• MTX (~737MB): Sequence profiles from PSI-BLAST search (for I-TASSER, LOMETS, MUSTER and SEGMER).
• DEP (~441MB): Depth-dependent structure profiles of templates (for I-TASSER, LOMETS, MUSTER and SEGMER).
• SIG (~466MB): Residue environmental profiles of templates (for I-TASSER, LOMETS).
• CNT (~187MB): Side-chain center contacts of templates (for I-TASSER, LOMETS).
• dotProfile (~243MB): Sequence profiles from PSI-BLAST search (for I-TASSER, LOMETS).
• stride (~5MB): Seven state secondary structure assignment (for I-TASSER, LOMETS).
• summary1 (~82MB): Sequence, secondary structure, solvent accessibilty, phi/psi angles (for I-TASSER, LOMETS, MUSTER and SEGMER).
• summary2 (~185MB): Training data for phi/psi prediction and contact prediction by SVM (for I-TASSER, LOMETS, MUSTER and SEGMER).
• Bfactor (~155MB): B-factor values of templates (for B-factor profile prediction).

Template library files needed for the COFACTOR and COACH programs. All libraries are weekly updated.

• BioLiP: Ligand-protein binding database.

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Reference:

J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12:7-8 (2015).

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