Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

FURNA

Download tab-separated tables

  • All RNAs: rna.tsv.gz
  • All ligand-RNA interactions: interaction.tsv.gz
  • All DNAs that interact with RNAs: dna.tsv.gz
  • All proteins that interact with RNAs: protein.tsv.gz
  • All small molecule ligands (regular ligands and metal ions) that interact with RNAs: ligand.tsv.gz
  • Match to ATtRACT motifs for protein binding: attract_fimo.tsv.gz
  • Full GO terms for each RNA, including the parent terms: parent.tsv.gz
  • Documentation for the above tables: readme.md

    • Download FASTA format sequences

    Molecule type All sequences Non-redundant sequences
    (clustered at 100% sequence identity cutoff)    		 Members of each cluster
    RNA (length ≥10) rna.fasta rna_nr.fasta rna.tsv.gz
    RNA fragment (length ≤9) fragment.fasta
    DNA dna.fasta dna_nr.fasta dna.tsv.gz
    Protein protein.fasta protein_nr.fasta protein.tsv.gz

    Download PDB format structures

  • All RNA chains: chain.tar
  • All interaction partners (i.e., ligands) for each RNA chain: ligand.tar

    • Download source code

  • The source code for database curation and web interface display: https://github.com/kad-ecoli/furna
    • Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

    • lydsfumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218