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FURNA
Download all results in tab-seperated text for 14210 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 157d:A
    (1.8Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 7922026 Assembly1
    rna:B:13~24 1~12
    2 157d:B
    (1.8Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 7922026 Assembly1
    rna:A:1~12 13~24
    3 1a34:B
    (1.81Å)
    		 10 N/A URS000080DEB3 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    rna:C:1~10 1,3~9
    rna:B-6:1~10 1~9
    rna:C-6:1~10 1~10
    4 1a34:C
    (1.81Å)
    		 10 N/A URS00002C5188 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    rna:B:1~10 1~9
    rna:B-6:1~10 1~10
    5 1a3m:A

    		 14 N/A URS000080DDDA N/A synthetic
    construct
    32630    		 9514734 Assembly1
    rna:B:15~27 1~14
    6 1a3m:B

    		 13 N/A URS000080E25F N/A synthetic
    construct
    32630    		 9514734 Assembly1
    rna:A:1~14 15~19,21~27
    7 1a4d:A

    		 21 N/A URS000080E377 N/A Escherichia
    coli
    562    		 9438864 Assembly1
    rna:B:89~108 68~86,88
    8 1a4d:B

    		 20 N/A URS000080DFD5 N/A Escherichia
    coli
    562    		 9438864 Assembly1
    rna:A:68~88 89~108
    9 1ajl:A

    		 12 N/A URS000080E014 N/A Tetrahymena
    thermophila
    5911    		 9254623 Assembly1
    rna:B:18~24 2~6,10~13
    10 1ajt:A

    		 12 N/A URS000080E014 N/A synthetic
    construct
    32630    		 9254623 Assembly1
    rna:B:18~24 2~5,10~13
    11 1al5:A

    		 12 N/A URS000080E287 N/A synthetic
    construct
    32630    		 9185574 Assembly1
    rna:B:1~12 1~12
    12 1al5:B

    		 12 N/A URS000080E287 N/A synthetic
    construct
    32630    		 9185574 Assembly1
    rna:A:1~12 1~12
    13 1aq3:S
    (2.8Å)
    		 12 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9469847 Assembly1
    rna:S-6:4~15 4~9,12~15
    14 1aq4:S
    (3.0Å)
    		 14 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 9469847 Assembly1
    rna:S-6:3~16 3~9,12~16
    15 1bau:A

    		 23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1
    11676    		 9628479 Assembly1
    rna:B:1~23 8~17
    16 1bau:B

    		 23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1
    11676    		 9628479 Assembly1
    rna:A:1~23 8~17
    17 1bj2:A

    		 21 N/A URS000080DDBD N/A synthetic
    construct
    32630    		 9739090 Assembly1
    rna:B:1~19 7~15
    18 1bj2:B

    		 19 N/A URS000080E325 N/A synthetic
    construct
    32630    		 9739090 Assembly1
    rna:A:1~21 6~13
    19 1csl:A
    (1.6Å)
    		 13 N/A URS000080DDF9 N/A synthetic
    construct
    32630    		 10656783 Assembly1
    rna:B:64~78 43~54
    20 1csl:B
    (1.6Å)
    		 15 N/A URS000080E02D N/A synthetic
    construct
    32630    		 10656783 Assembly1
    rna:A:43~55 64~67,69~71,73~78
    21 1d4r:A
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly1
    rna:B:1~29 1~14,16~28
    22 1d4r:B
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly1
    rna:A:1~29 1~13,16~28
    23 1d4r:C
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly2
    rna:C-2:1~29 2~28
    24 1dfu:M
    (1.8Å)
    		 19 N/A URS000080E19E N/A synthetic
    construct
    32630    		 10696113 Assembly1
    rna:N:68~86 91~107
    25 1dfu:N
    (1.8Å)
    		 19 N/A URS000080DF0F N/A synthetic
    construct
    32630    		 10696113 Assembly1
    rna:M:91~109 70~86
    26 1di2:C
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    rna:D:11~20 1~10
    27 1di2:D
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    rna:C:1~10 11~20
    28 1di2:E
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly2
    rna:E-2:21~30 21~30
    29 1di2:G
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly3
    rna:G-3:41~50 41~48,50
    30 1dqf:B
    (2.2Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    31 1dqh:B
    (1.7Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    32 1duh:A
    (2.7Å)
    		 45 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0AE RF00169 synthetic
    construct
    32630    		 10801497 Assembly1
    rna:A-2:31~75 31~38,43~75
    33 1duq:A
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:B:117 101~112
    34 1duq:B
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:A:101~112 117~120,122~124,126~130
    35 1duq:C
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:D:217~230 201~212
    36 1duq:D
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:C:201~212 217~220,222~224,226~230
    37 1duq:E
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly3
    rna:F:317~330 301~312
    38 1duq:F
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly3
    rna:E:301~312 317~320,322~324,326~330
    39 1duq:G
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly4
    rna:H:417~430 401~412
    40 1duq:H
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly4
    rna:G:401~412 417~420,422~424,426~430
    41 1dz5:C

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    rna:D:34~55 8~13,20~29
    42 1dz5:D

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    rna:C:8~29 34~39,46~55
    43 1elh:A

    		 12 N/A URS000080E111 N/A Escherichia
    coli
    562    		 1371071 Assembly1
    rna:B:8~20 -1,1~10
    44 1elh:B

    		 13 N/A URS000080DD78 N/A Escherichia
    coli
    562    		 1371071 Assembly1
    rna:A:-1~11 9~20
    45 1f27:A
    (1.3Å)
    		 19 N/A URS000080E0B3 N/A synthetic
    construct
    32630    		 10698630 Assembly1
    rna:B:22~32 4~5,7~8,10~19
    46 1f27:B
    (1.3Å)
    		 11 N/A URS000080DF5E N/A synthetic
    construct
    32630    		 10698630 Assembly1
    rna:A:3~21 22~32
    47 1f5g:A

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:B:1~10 1~10
    48 1f5g:B

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:A:1~10 1~10
    49 1f5h:A

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:B:1~10 1~10
    50 1f5h:B

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:A:1~10 1~10
    51 1f5u:A

    		 18 N/A URS000080DEA8 N/A synthetic
    construct
    32630    		 10931958 Assembly1
    rna:B:1~18 9~11,13
    52 1f5u:B

    		 18 N/A URS000080DEA8 N/A synthetic
    construct
    32630    		 10931958 Assembly1
    rna:A:1~18 9~11,13
    53 1f8v:R
    (3.0Å)
    		 25 N/A URS000080E0CB N/A Pariacoto
    virus
    103782    		 11135676 Assembly1
    rna:R-6:1~25 4~21,23~24
    54 1fcw:A
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:B:1~76 1~74
    55 1fcw:B
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:A:1~76 1~74
    rna:C:1~76 1,16,71~74
    56 1fcw:C
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:B:1~76 47,74~76
    57 1fcw:D
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:E:1~76 5~26,44~65,67~68
    58 1fcw:E
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:D:1~76 1~8,13~21,47~70
    59 1feu:B
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    rna:C:90~110 70~86
    60 1feu:C
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    rna:B:69~87 90~107
    61 1feu:E
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    rna:F:90~110 70~86
    62 1feu:F
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    rna:E:69~87 90~107
    63 1ffk:0
    (2.4Å)
    		 2706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 10937989 Assembly1
    rna:9:1~122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    64 1ffk:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 10937989 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    65 1ffz:A
    (3.2Å)
    		 496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2C7 RF02540 Haloarcula
    marismortui
    2238    		 10937990 Assembly1
    rna:B:74~77 2104~2105,2284~2286,2485~2487,
    2541,2588,2618~2620,2637
    66 1fg0:A
    (3.0Å)
    		 496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2C7 RF02540 Haloarcula
    marismortui
    2238    		 10937990 Assembly1
    rna:B:74~76 2102,2104,2486~2487,2541~2542,
    2588~2590,2618~2619,2637
    67 1fjg:A
    (3.0Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11014183 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    68 1foq:A
    (20.0Å)
    		 109 N/A URS000080E166 RF00044 Salasvirus
    phi29
    10756    		 11130079 Assembly1
    rna:B:1~117 45~48
    rna:E:1~117 81~85
    69 1foq:B
    (20.0Å)
    		 109 N/A URS000080E166 RF00044 Salasvirus
    phi29
    10756    		 11130079 Assembly1
    rna:A:1~117 81~85
    rna:C:1~117 43,45~48
    70 1foq:C
    (20.0Å)
    		 109 N/A URS000080E166 RF00044 Salasvirus
    phi29
    10756    		 11130079 Assembly1
    rna:B:1~117 82~85
    rna:D:1~117 45~48
    71 1foq:D
    (20.0Å)
    		 109 N/A URS000080E166 RF00044 Salasvirus
    phi29
    10756    		 11130079 Assembly1
    rna:C:1~117 81~85
    rna:E:1~117 43,45~47
    72 1foq:E
    (20.0Å)
    		 109 N/A URS000080E166 RF00044 Salasvirus
    phi29
    10756    		 11130079 Assembly1
    rna:A:1~117 43,45~48
    rna:D:1~117 81~85
    73 1fuf:A
    (1.7Å)
    		 14 N/A URS000080E241 N/A synthetic
    construct
    32630    		 11680847 Assembly1
    rna:B:15~28 1~6,8~14
    74 1fuf:B
    (1.7Å)
    		 14 N/A URS000080E241 N/A synthetic
    construct
    32630    		 11680847 Assembly1
    rna:A:1~14 15~20,22~28
    75 1g1x:D
    (2.6Å)
    		 40 N/A URS000080E268 N/A synthetic
    construct
    32630    		 10753109 Assembly1
    rna:E:716~759 582~588,651~652,654~673
    76 1g1x:E
    (2.6Å)
    		 44 N/A URS000080E2CD N/A synthetic
    construct
    32630    		 10753109 Assembly1
    rna:D:582~675 717,724~726,732~747,749~759
    77 1g1x:I
    (2.6Å)
    		 41 N/A URS000080E268 N/A synthetic
    construct
    32630    		 10753109 Assembly2
    rna:J:716~759 582~588,652~674
    78 1g1x:J
    (2.6Å)
    		 44 N/A URS000080E2CD N/A synthetic
    construct
    32630    		 10753109 Assembly2
    rna:I:582~676 717,724~726,732~747,749~759
    79 1h1k:I
    (10.0Å)
    		 412 N/A URS000080E18E N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly1
    rna:L:413~824 1~412
    80 1h1k:J
    (10.0Å)
    		 276 N/A URS000080E296 N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly2
    rna:M:277~552 1~276
    81 1h1k:K
    (10.0Å)
    		 265 N/A URS000080E17F N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly3
    rna:N:266~530 1~265
    82 1h1k:L
    (10.0Å)
    		 412 N/A URS000080DF28 N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly1
    rna:I:1~412 413~824
    83 1h1k:M
    (10.0Å)
    		 276 N/A URS000080E01E N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly2
    rna:J:1~276 277~552
    84 1h1k:N
    (10.0Å)
    		 265 N/A URS000080DD80 N/A Bluetongue
    virus
    40051    		 12186935
    9774103    		 Assembly3
    rna:K:1~265 266~530
    85 1hnw:A
    (3.4Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    rna:X:1~6 693,788~789,926,1400,1498,1505
    ~1506
    86 1hnx:A
    (3.4Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    rna:X:1~6 926,1400,1498
    87 1hnz:A
    (3.3Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    88 1hr0:A
    (3.2Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11228145 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    89 1i2x:A
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:B:21~31 1~7,9~11
    90 1i2x:B
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:A:1~11 21~27,29~31
    91 1i2x:C
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:D:101~111 121~127,129~131
    92 1i2x:D
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:C:121~131 101~107,109~111
    93 1i2y:A
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:B:21~31 1~7,9~11
    94 1i2y:B
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:A:1~11 21~27,29~31
    95 1i2y:C
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:D:121 101~107,109~111
    96 1i2y:D
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:C:101~111 121~127,129~131
    97 1i2y:E
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly3
    rna:F:221~231 201~207,209~211
    98 1i2y:F
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly3
    rna:E:201~211 221~227,229~231
    99 1i9x:A
    (2.18Å)
    		 13 N/A URS000080E04A N/A synthetic
    construct
    32630    		 11350032 Assembly1
    rna:B:1~13 1~4,6~13
    100 1i9x:B
    (2.18Å)
    		 13 N/A URS000080E04A N/A synthetic
    construct
    32630    		 11350032 Assembly1
    rna:A:1~13 1~4,6~13
    << < 1 2 3 4 5 6 7 8 9 10 11 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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