SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    1 10px:1A
    (2.45Å)

    2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:1B:1~120 861~864,915~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864

    rna:1w:1~76 882,897,1913,2451~2452,2482~24
    83,2506~2507,2553~2555,2573,25
    83~2585,2602

    rna:1x:1~76 1907~1909,1922~1924,2063,2251~
    2252,2439,2450~2451,2585,2601~
    2602

    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    2 10px:1B
    (2.45Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~101
    3 10px:1a
    (2.45Å)

    1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517

    rna:1v:12~24 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507

    rna:1w:1~76 530~531,1054,1493
    rna:1x:1~76 790,966,1229~1230,1338~1340,14
    00
    4 10px:1v
    (2.45Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    N/A Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:1~76 16~18
    5 10px:1w
    (2.45Å)

    74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    6 10px:1x
    (2.45Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    7 10px:1y
    (2.45Å)

    74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:1A:6~2897 19,56,71,76
    8 10px:2A
    (2.45Å)

    2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:2B:1~120 861~864,915,917~918,958
    rna:2a:4~1532 1689,1701,1703~1704,1832,1836~
    1837,1846,1848,1895,1912~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864

    rna:2w:2~76 881,897,1913,2451~2452,2482~24
    83,2506~2507,2553~2555,2583~25
    85,2602

    rna:2x:1~76 1907~1909,1922~1924,2062~2063,
    2251~2253,2439,2450~2451,2585,
    2601~2602

    rna:2y:1~76 1851~1852,1885,2112,2169,2394~
    2395,2421~2422,2432
    9 10px:2B
    (2.45Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:2A:6~2897 78~81,90,97~98,100~102
    10 10px:2a
    (2.45Å)

    1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    N/A Assembly1
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1474~1475,148
    3~1485,1494~1496,1517

    rna:2v:12~24 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505~1507

    rna:2w:2~76 530,1054,1493
    rna:2x:1~76 790,966,1229~1230,1338~1341,14
    00

    rna:2y:1~76 694~695
    11 10px:2v
    (2.45Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    N/A Assembly1
    rna:2a:4~1532 13,15~20,22~24
    rna:2w:2~76 19~21
    rna:2x:1~76 16~18
    12 10px:2w
    (2.45Å)

    72 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    13 10px:2x
    (2.45Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:12~24 34~37
    14 10px:2y
    (2.45Å)

    73 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:2A:6~2897 3,19,56,71~72,76
    15 157d:A
    (1.8Å)

    12 N/A URS000080E0B7 N/A synthetic
    construct

    32630
    7922026 Assembly1
    rna:B:13~24 1~12
    16 157d:B
    (1.8Å)

    12 N/A URS000080E0B7 N/A synthetic
    construct

    32630
    7922026 Assembly1
    rna:A:1~12 13~24
    17 1a34:B
    (1.81Å)

    10 N/A URS000080DEB3 N/A synthetic
    construct

    32630
    9514737 Assembly1
    rna:C:1~10 1,3~9
    rna:B-6:1~10 1~9
    rna:C-6:1~10 1~10
    18 1a34:C
    (1.81Å)

    10 N/A URS00002C5188 N/A synthetic
    construct

    32630
    9514737 Assembly1
    rna:B:1~10 1~9
    rna:B-6:1~10 1~10
    19 1a3m:A

    14 N/A URS000080DDDA N/A synthetic
    construct

    32630
    9514734 Assembly1
    rna:B:15~27 1~14
    20 1a3m:B

    13 N/A URS000080E25F N/A synthetic
    construct

    32630
    9514734 Assembly1
    rna:A:1~14 15~19,21~27
    21 1a4d:A

    21 N/A URS000080E377 N/A Escherichia
    coli

    562
    9438864 Assembly1
    rna:B:89~108 68~86,88
    22 1a4d:B

    20 N/A URS000080DFD5 N/A Escherichia
    coli

    562
    9438864 Assembly1
    rna:A:68~88 89~108
    23 1ajl:A

    12 N/A URS000080E014 N/A Tetrahymena
    thermophila

    5911
    9254623 Assembly1
    rna:B:18~24 2~6,10~13
    24 1ajt:A

    12 N/A URS000080E014 N/A synthetic
    construct

    32630
    9254623 Assembly1
    rna:B:18~24 2~5,10~13
    25 1al5:A

    12 N/A URS000080E287 N/A synthetic
    construct

    32630
    9185574 Assembly1
    rna:B:1~12 1~12
    26 1al5:B

    12 N/A URS000080E287 N/A synthetic
    construct

    32630
    9185574 Assembly1
    rna:A:1~12 1~12
    27 1aq3:S
    (2.8Å)

    12 N/A URS000080DDB6 N/A synthetic
    construct

    32630
    9469847 Assembly1
    rna:S-6:4~15 4~9,12~15
    28 1aq4:S
    (3.0Å)

    14 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2

    12022
    9469847 Assembly1
    rna:S-6:3~16 3~9,12~16
    29 1bau:A

    23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1

    11676
    9628479 Assembly1
    rna:B:1~23 8~17
    30 1bau:B

    23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1

    11676
    9628479 Assembly1
    rna:A:1~23 8~17
    31 1bj2:A

    21 N/A URS000080DDBD N/A synthetic
    construct

    32630
    9739090 Assembly1
    rna:B:1~19 7~15
    32 1bj2:B

    19 N/A URS000080E325 N/A synthetic
    construct

    32630
    9739090 Assembly1
    rna:A:1~21 6~13
    33 1csl:A
    (1.6Å)

    13 N/A URS000080DDF9 N/A synthetic
    construct

    32630
    10656783 Assembly1
    rna:B:64~78 43~54
    34 1csl:B
    (1.6Å)

    15 N/A URS000080E02D N/A synthetic
    construct

    32630
    10656783 Assembly1
    rna:A:43~55 64~67,69~71,73~78
    35 1d4r:A
    (2.0Å)

    29 N/A URS000080DDD1 N/A Homo
    sapiens

    9606
    10574798
    s72
    Assembly1
    rna:B:1~29 1~14,16~28
    36 1d4r:B
    (2.0Å)

    29 N/A URS000080DDD1 N/A Homo
    sapiens

    9606
    10574798
    s72
    Assembly1
    rna:A:1~29 1~13,16~28
    37 1d4r:C
    (2.0Å)

    29 N/A URS000080DDD1 N/A Homo
    sapiens

    9606
    10574798
    s72
    Assembly2
    rna:C-2:1~29 2~28
    38 1dfu:M
    (1.8Å)

    19 N/A URS000080E19E N/A synthetic
    construct

    32630
    10696113 Assembly1
    rna:N:68~86 91~107
    39 1dfu:N
    (1.8Å)

    19 N/A URS000080DF0F N/A synthetic
    construct

    32630
    10696113 Assembly1
    rna:M:91~109 70~86
    40 1di2:C
    (1.9Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    9857205 Assembly1
    rna:D:11~20 1~10
    41 1di2:D
    (1.9Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    9857205 Assembly1
    rna:C:1~10 11~20
    42 1di2:E
    (1.9Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    9857205 Assembly2
    rna:E-2:21~30 21~30
    43 1di2:G
    (1.9Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    9857205 Assembly3
    rna:G-3:41~50 41~48,50
    44 1dqf:B
    (2.2Å)

    10 N/A URS000080E151 N/A synthetic
    construct

    32630
    10999608 Assembly1
    rna:A:1~9 10~15,17~19
    45 1dqh:B
    (1.7Å)

    10 N/A URS000080E151 N/A synthetic
    construct

    32630
    10999608 Assembly1
    rna:A:1~9 10~15,17~19
    46 1duh:A
    (2.7Å)

    45 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...
    URS000080E0AE RF00169 synthetic
    construct

    32630
    10801497 Assembly1
    rna:A-2:31~75 31~38,43~75
    47 1duq:A
    (2.1Å)

    12 N/A URS000080DFAD N/A synthetic
    construct

    32630
    10792052 Assembly1
    rna:B:117 101~112
    48 1duq:B
    (2.1Å)

    14 N/A URS000080DE8A N/A synthetic
    construct

    32630
    10792052 Assembly1
    rna:A:101~112 117~120,122~124,126~130
    49 1duq:C
    (2.1Å)

    12 N/A URS000080DFAD N/A synthetic
    construct

    32630
    10792052 Assembly2
    rna:D:217~230 201~212
    50 1duq:D
    (2.1Å)

    14 N/A URS000080DE8A N/A synthetic
    construct

    32630
    10792052 Assembly2
    rna:C:201~212 217~220,222~224,226~230
    51 1duq:E
    (2.1Å)

    12 N/A URS000080DFAD N/A synthetic
    construct

    32630
    10792052 Assembly3
    rna:F:317~330 301~312
    52 1duq:F
    (2.1Å)

    14 N/A URS000080DE8A N/A synthetic
    construct

    32630
    10792052 Assembly3
    rna:E:301~312 317~320,322~324,326~330
    53 1duq:G
    (2.1Å)

    12 N/A URS000080DFAD N/A synthetic
    construct

    32630
    10792052 Assembly4
    rna:H:417~430 401~412
    54 1duq:H
    (2.1Å)

    14 N/A URS000080DE8A N/A synthetic
    construct

    32630
    10792052 Assembly4
    rna:G:401~412 417~420,422~424,426~430
    55 1dz5:C

    22 N/A URS000080DE18 N/A Homo
    sapiens

    9606
    10742179
    518

    346

    M319_0.6
    Assembly1
    rna:D:34~55 8~13,20~29
    56 1dz5:D

    22 N/A URS000080DE18 N/A Homo
    sapiens

    9606
    10742179
    518

    346

    M319_0.6
    Assembly1
    rna:C:8~29 34~39,46~55
    57 1elh:A

    12 N/A URS000080E111 N/A Escherichia
    coli

    562
    1371071 Assembly1
    rna:B:8~20 -1,1~10
    58 1elh:B

    13 N/A URS000080DD78 N/A Escherichia
    coli

    562
    1371071 Assembly1
    rna:A:-1~11 9~20
    59 1f27:A
    (1.3Å)

    19 N/A URS000080E0B3 N/A synthetic
    construct

    32630
    10698630 Assembly1
    rna:B:22~32 4~5,7~8,10~19
    60 1f27:B
    (1.3Å)

    11 N/A URS000080DF5E N/A synthetic
    construct

    32630
    10698630 Assembly1
    rna:A:3~21 22~32
    61 1f5g:A

    10 N/A URS000080DE87 N/A synthetic
    construct

    32630
    10995243 Assembly1
    rna:B:1~10 1~10
    62 1f5g:B

    10 N/A URS000080DE87 N/A synthetic
    construct

    32630
    10995243 Assembly1
    rna:A:1~10 1~10
    63 1f5h:A

    10 N/A URS000080DE87 N/A synthetic
    construct

    32630
    10995243 Assembly1
    rna:B:1~10 1~10
    64 1f5h:B

    10 N/A URS000080DE87 N/A synthetic
    construct

    32630
    10995243 Assembly1
    rna:A:1~10 1~10
    65 1f5u:A

    18 N/A URS000080DEA8 N/A synthetic
    construct

    32630
    10931958 Assembly1
    rna:B:1~18 9~11,13
    66 1f5u:B

    18 N/A URS000080DEA8 N/A synthetic
    construct

    32630
    10931958 Assembly1
    rna:A:1~18 9~11,13
    67 1f8v:R
    (3.0Å)

    25 N/A URS000080E0CB N/A Pariacoto
    virus

    103782
    11135676 Assembly1
    rna:R-6:1~25 4~21,23~24
    68 1fcw:A
    (17.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Saccharomyces
    cerevisiae

    4932
    10931859 Assembly1
    rna:B:1~76 1~74
    69 1fcw:B
    (17.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Saccharomyces
    cerevisiae

    4932
    10931859 Assembly1
    rna:A:1~76 1~74
    rna:C:1~76 1,16,71~74
    70 1fcw:C
    (17.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Saccharomyces
    cerevisiae

    4932
    10931859 Assembly1
    rna:B:1~76 47,74~76
    71 1fcw:D
    (17.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Saccharomyces
    cerevisiae

    4932
    10931859 Assembly1
    rna:E:1~76 5~26,44~65,67~68
    72 1fcw:E
    (17.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Saccharomyces
    cerevisiae

    4932
    10931859 Assembly1
    rna:D:1~76 1~8,13~21,47~70
    73 1feu:B
    (2.3Å)

    19 N/A URS000080E277 N/A synthetic
    construct

    32630
    11418764 Assembly1
    rna:C:90~110 70~86
    74 1feu:C
    (2.3Å)

    21 N/A URS000080E275 N/A synthetic
    construct

    32630
    11418764 Assembly1
    rna:B:69~87 90~107
    75 1feu:E
    (2.3Å)

    19 N/A URS000080E277 N/A synthetic
    construct

    32630
    11418764 Assembly2
    rna:F:90~110 70~86
    76 1feu:F
    (2.3Å)

    21 N/A URS000080E275 N/A synthetic
    construct

    32630
    11418764 Assembly2
    rna:E:69~87 90~107
    77 1ffk:0
    (2.4Å)

    2706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    10937989 Assembly1
    rna:9:1~122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    78 1ffk:9
    (2.4Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    10937989 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    79 1ffz:A
    (3.2Å)

    496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E2C7 RF02540 Haloarcula
    marismortui

    2238
    10937990 Assembly1
    rna:B:74~77 2104~2105,2284~2286,2485~2487,
    2541,2588,2618~2620,2637
    80 1fg0:A
    (3.0Å)

    496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E2C7 RF02540 Haloarcula
    marismortui

    2238
    10937990 Assembly1
    rna:B:74~76 2102,2104,2486~2487,2541~2542,
    2588~2590,2618~2619,2637
    81 1fjg:A
    (3.0Å)

    1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    11014183 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    82 1foq:A
    (20.0Å)

    109 N/A URS000080E166 RF00044 Salasvirus
    phi29

    10756
    11130079 Assembly1
    rna:B:1~117 45~48
    rna:E:1~117 81~85
    83 1foq:B
    (20.0Å)

    109 N/A URS000080E166 RF00044 Salasvirus
    phi29

    10756
    11130079 Assembly1
    rna:A:1~117 81~85
    rna:C:1~117 43,45~48
    84 1foq:C
    (20.0Å)

    109 N/A URS000080E166 RF00044 Salasvirus
    phi29

    10756
    11130079 Assembly1
    rna:B:1~117 82~85
    rna:D:1~117 45~48
    85 1foq:D
    (20.0Å)

    109 N/A URS000080E166 RF00044 Salasvirus
    phi29

    10756
    11130079 Assembly1
    rna:C:1~117 81~85
    rna:E:1~117 43,45~47
    86 1foq:E
    (20.0Å)

    109 N/A URS000080E166 RF00044 Salasvirus
    phi29

    10756
    11130079 Assembly1
    rna:A:1~117 43,45~48
    rna:D:1~117 81~85
    87 1fuf:A
    (1.7Å)

    14 N/A URS000080E241 N/A synthetic
    construct

    32630
    11680847 Assembly1
    rna:B:15~28 1~6,8~14
    88 1fuf:B
    (1.7Å)

    14 N/A URS000080E241 N/A synthetic
    construct

    32630
    11680847 Assembly1
    rna:A:1~14 15~20,22~28
    89 1g1x:D
    (2.6Å)

    40 N/A URS000080E268 N/A synthetic
    construct

    32630
    10753109 Assembly1
    rna:E:716~759 582~588,651~652,654~673
    90 1g1x:E
    (2.6Å)

    44 N/A URS000080E2CD N/A synthetic
    construct

    32630
    10753109 Assembly1
    rna:D:582~675 717,724~726,732~747,749~759
    91 1g1x:I
    (2.6Å)

    41 N/A URS000080E268 N/A synthetic
    construct

    32630
    10753109 Assembly2
    rna:J:716~759 582~588,652~674
    92 1g1x:J
    (2.6Å)

    44 N/A URS000080E2CD N/A synthetic
    construct

    32630
    10753109 Assembly2
    rna:I:582~676 717,724~726,732~747,749~759
    93 1h1k:I
    (10.0Å)

    412 N/A URS000080E18E N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly1
    rna:L:413~824 1~412
    94 1h1k:J
    (10.0Å)

    276 N/A URS000080E296 N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly2
    rna:M:277~552 1~276
    95 1h1k:K
    (10.0Å)

    265 N/A URS000080E17F N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly3
    rna:N:266~530 1~265
    96 1h1k:L
    (10.0Å)

    412 N/A URS000080DF28 N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly1
    rna:I:1~412 413~824
    97 1h1k:M
    (10.0Å)

    276 N/A URS000080E01E N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly2
    rna:J:1~276 277~552
    98 1h1k:N
    (10.0Å)

    265 N/A URS000080DD80 N/A Bluetongue
    virus

    40051
    12186935
    9774103
    Assembly3
    rna:K:1~265 266~530
    99 1hnw:A
    (3.4Å)

    1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    11163189 Assembly1
    rna:X:1~6 693,788~789,926,1400,1498,1505
    ~1506
    100 1hnx:A
    (3.4Å)

    1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    11163189 Assembly1
    rna:X:1~6 926,1400,1498
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.