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FURNA
Download all results in tab-seperated text for 15266 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1a1t:B

    		 20 N/A URS000080DD5B N/A synthetic
    construct
    32630    		 9430589 Assembly1
    protein:A:1 203~204,206,208,210~214
    2 1a34:B
    (1.81Å)
    		 10 N/A URS000080DEB3 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    protein:A-6:13~159 6~8
    3 1a34:C
    (1.81Å)
    		 10 N/A URS00002C5188 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    protein:A:13~159 7~8
    protein:A-34:13~159 4~5
    4 1a4t:A

    		 15 N/A URS000080E159 N/A synthetic
    construct
    32630    		 9501914 Assembly1
    protein:B:1~19 4~9,11~12,14~15
    5 1a9n:Q
    (2.38Å)
    		 24 N/A URS000080E0B0 N/A Homo
    sapiens
    9606    		 9716128
    504    		 Assembly1
    protein:B:6~99 1,4~13,15~17
    6 1a9n:R
    (2.38Å)
    		 24 N/A URS000080E0B0 N/A Homo
    sapiens
    9606    		 9716128
    504    		 Assembly2
    protein:D:6~98 5~13,15~17
    7 1aq3:R
    (2.8Å)
    		 16 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9469847 Assembly1
    protein:A:1~129 3,11~12
    protein:B-5:1~129 6,8~9
    8 1aq3:S
    (2.8Å)
    		 12 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9469847 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    9 1aq4:R
    (3.0Å)
    		 16 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 9469847 Assembly1
    protein:A:1~129 11~12
    protein:B-5:1~129 6,8~9
    10 1aq4:S
    (3.0Å)
    		 14 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 9469847 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    11 1asy:R
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 2047877 Assembly1
    protein:A:68~557 601,610,612,625,627~628,630,63
    2~638,668,672~676
    12 1asy:S
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 2047877 Assembly1
    protein:B:68~557 601,612,625~626,632,634~638,66
    8,672~676
    13 1asz:R
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 8313877 Assembly1
    protein:A:68~557 601,610,612,626,628,632~638,66
    7~668,672~676
    14 1asz:S
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 8313877 Assembly1
    protein:B:68~557 601,610~612,626~627,632~638,66
    8,672~676
    15 1aud:B

    		 30 N/A URS000080DECF N/A synthetic
    construct
    32630    		 9312034 Assembly1
    protein:A:1~101 24~25,39~45
    16 1b23:R
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000003E908 RF00005 Escherichia
    coli
    562    		 10368282 Assembly1
    protein:P:1~405 1~3,51~54,63~67,74~76
    17 1b7f:P
    (2.6Å)
    		 12 N/A URS000080DF5A N/A Drosophila
    melanogaster
    7227    		 10217141
    398

    1356    		 Assembly1
    protein:A:123~289 3~12
    18 1b7f:Q
    (2.6Å)
    		 12 N/A URS000080DF5A N/A Drosophila
    melanogaster
    7227    		 10217141
    398

    1356    		 Assembly2
    protein:B:123~289 3~6,8~12
    19 1biv:A

    		 28 N/A URS000080DE03 N/A synthetic
    construct
    32630    		 8807816 Assembly1
    protein:B:65~81 4~5,8~11,13~15,17~25,27
    20 1bmv:M
    (3.0Å)
    		 11 N/A URS000080DDDC N/A synthetic
    construct
    32630    		 2749253 Assembly1
    protein:2:3001~2192 1,3~4
    21 1c04:E
    (5.0Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E180 RF02541
    RF02540    		 Haloarcula
    marismortui
    2238    		 10476961 Assembly1
    protein:C:6~72 9~15,26~27,29~32
    22 1c0a:B
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Escherichia
    coli
    562    		 10562565 Assembly1
    protein:A:1~585 610~612,625,628,632~636,638,66
    7~676
    23 1c9s:W
    (1.9Å)
    		 55 N/A URS000080E375 N/A synthetic
    construct
    32630    		 10499579 Assembly2
    protein:L:5~74 101~106
    protein:M:5~75 106~111
    protein:N:5~74 111~116
    protein:O:5~75 116~117,119~121
    protein:P:5~74 121~122,124~126
    protein:Q:5~74 126~127,129~131
    protein:R:5~74 131~136
    protein:S:5~74 136~141
    protein:T:5~74 141~146
    protein:U:5~74 146~147,149~151
    protein:V:5~74 101,151~155
    24 1d6k:B

    		 37 N/A URS000080E091 N/A synthetic
    construct
    32630    		 10562563 Assembly1
    protein:A:1~94 273~277,279,295~298,303~304,30
    6
    25 1dfu:M
    (1.8Å)
    		 19 N/A URS000080E19E N/A synthetic
    construct
    32630    		 10696113 Assembly1
    protein:P:1~94 92,94~95,98,103~104
    26 1dfu:N
    (1.8Å)
    		 19 N/A URS000080DF0F N/A synthetic
    construct
    32630    		 10696113 Assembly1
    protein:P:1~94 73~80
    27 1di2:C
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    protein:A:112~180 5~7
    protein:B:112~180 8~10
    28 1di2:D
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    protein:A:112~180 16~19
    protein:B:112~180 13~16
    29 1dk1:B
    (2.8Å)
    		 57 N/A URS000080E305 N/A Thermus
    thermophilus
    274    		 10742169 Assembly1
    protein:A:101~186 20~23,30~33,37~41,49~54
    30 1drz:B
    (2.3Å)
    		 72 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E321 RF00094 Hepatitis
    delta
    virus
    12475    		 9783582 Assembly1
    protein:A:4~98 144,148~154,157~158
    31 1dul:B
    (1.8Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DD2B RF00169 synthetic
    construct
    32630    		 10678824 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    32 1dz5:C

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    protein:A:1~101 24~25
    protein:B:1~101 13~19
    33 1dz5:D

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    protein:A:1~101 40~45
    protein:B:1~101 50~51
    34 1e7k:C
    (2.9Å)
    		 17 N/A URS000080E042 N/A Homo
    sapiens
    9606    		 11163207
    10545122
    708

    705

    52

    183

    123

    125    		 Assembly1
    protein:A:4~128 29~32,42~43
    35 1e7k:D
    (2.9Å)
    		 17 N/A URS000080E042 N/A Homo
    sapiens
    9606    		 11163207
    10545122
    708

    705

    52

    183

    123

    125    		 Assembly2
    protein:B:6~128 29~32,42~43
    36 1e8o:E
    (3.2Å)
    		 50 GO:0006617 (P) SRP-dependent cotransla...
    GO:0035195 (P) miRNA-mediated post-tra...
    GO:0005786 (C) signal recognition part...
    GO:0016442 (C) RISC complex    		 URS000080E0CE RF00017
    RF04277    		 Homo
    sapiens
    9606    		 11089964
    M054_0.6

    M109_0.6

    M044_0.6

    445

    M151_0.6    		 Assembly1
    protein:A:2~75 112~114
    protein:B:2~95 113,135~136
    protein:C:5~75 121~124
    protein:D:2~95 119,121,123~129
    37 1ec6:C
    (2.4Å)
    		 20 N/A URS000080E29D N/A synthetic
    construct
    32630    		 10676814 Assembly2
    protein:B:4~87 6~15
    38 1ec6:D
    (2.4Å)
    		 20 N/A URS000080E29D N/A synthetic
    construct
    32630    		 10676814 Assembly1
    protein:A:4~90 7,10~16
    39 1efw:C
    (3.0Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000150212 RF00005 Escherichia
    coli
    562    		 10843857 Assembly1
    protein:A:1~580 11,26~29,32~38,68,72
    40 1efw:D
    (3.0Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000150212 RF00005 Escherichia
    coli
    562    		 10843857 Assembly2
    protein:B:1~580 28,32~38
    41 1eiy:C
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E078 RF00005 Thermus
    thermophilus
    HB8
    300852    		 9016717 Assembly1
    protein:A:6~350 75~76
    protein:B:1~785 26~27,74~75
    protein:A-2:6~350 19,43~44,56
    protein:B-2:1~785 11~12,25~26,34~37
    42 1ekz:B

    		 30 N/A URS000080DFCA N/A synthetic
    construct
    32630    		 10698941 Assembly1
    protein:A:1~76 2~4,15~16,28~29
    43 1etf:A

    		 34 N/A URS000080E35B N/A synthetic
    construct
    32630    		 8703216 Assembly1
    protein:B:33~55 45~48,66~70,72~73
    44 1etg:A

    		 34 N/A URS000080E35B N/A synthetic
    construct
    32630    		 8703216 Assembly1
    protein:B:33~55 45~48,66~73
    45 1euq:B
    (3.1Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E003 RF00005 Escherichia
    coli
    562    		 10860750 Assembly1
    protein:A:8 902~904,906,911~913,916,925,92
    7,934~938,972~976
    46 1euy:B
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E0EE RF00005 Escherichia
    coli
    562    		 10860750 Assembly1
    protein:A:8 902~907,911~914,916,925,927,93
    4~938,971~976
    47 1exd:B
    (2.7Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE52 RF00005 Escherichia
    coli
    562    		 10881199 Assembly1
    protein:A:8~547 902~908,911~913,925,934~938,96
    9,971~976
    48 1exy:A

    		 33 N/A URS000080E1F2 N/A synthetic
    construct
    32630    		 10647177 Assembly1
    protein:B:101~116 3~9,18~26
    49 1f6u:B

    		 19 GO:0043484 (P) regulation of RNA splicing URS000080E02B RF01380 Human
    immunodeficiency
    virus
    1
    11676    		 10926523 Assembly1
    protein:A:1 209~213,215
    50 1f7u:B
    (2.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E1EA RF00005 Saccharomyces
    cerevisiae
    4932    		 11060012 Assembly1
    protein:A:2~607 903~904,913~916,918~919,923~92
    4,934~941,956,969~974,976
    51 1f7v:B
    (2.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E1EA RF00005 Saccharomyces
    cerevisiae
    4932    		 11060012 Assembly1
    protein:A:2~607 904,914~916,918~919,922~925,93
    4~941,956,969~972
    52 1f7y:B
    (2.8Å)
    		 57 N/A URS000080E305 N/A synthetic
    construct
    32630    		 11071808 Assembly1
    protein:A:1~86 20~23,30~33,37~41,49~54
    53 1f8v:R
    (3.0Å)
    		 25 N/A URS000080E0CB N/A Pariacoto
    virus
    103782    		 11135676 Assembly1
    protein:A:7~361 4~5
    protein:A-6:7~361 13~14,16~17
    54 1feu:B
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    protein:A:1~185 73~77
    55 1feu:C
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    protein:A:1~185 93~95,102~106
    56 1feu:E
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    protein:D:1~189 73~77
    57 1feu:F
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    protein:D:1~189 92,94,102~106
    58 1ffk:0
    (2.4Å)
    		 2706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 10937989 Assembly1
    protein:A:1~237 820,1653,1846,1852,1861,1869,1
    872,1875~1876,1880~1882,1899,1
    943,2633~2634
    protein:B:1~337 1733,2093,2546,2609,2657,2672,
    2679,2715,2717,2719,2756,2765,
    2808,2821,2838~2839,2861,2897~
    2898
    protein:C:1~246 34~35,458,672,1308,1343,1359,2
    100~2101
    protein:D:10~174 2337~2338
    protein:E:2~119 262~264
    protein:F:1~157 1055,1134,2310,2519~2520
    protein:G:4~145 1244,2676,2803,2815
    protein:H:1~132 2582~2583,2598,2687
    protein:I:1~194 188~189,194~195,243,251,402,77
    0,2263,2275
    protein:J:1~151 166,692,697~698,700,904,1294~1
    295,2430~2431
    protein:K:1~186 2368,2415
    protein:L:1~115 655~656,659~660,710,721,745
    protein:M:1~143 1501,1565~1566,1593,1708,1719,
    1761,1784~1785
    protein:N:1~95 951,2296,2365,2394,2404
    protein:O:1~150 21,1370,1689,2088~2089
    protein:S:1~65 68,94
    protein:T:1~154 945,1067,1086,1096~1097,1285
    protein:V:1~143 622~623,1089,1268,1312~1313,13
    15,1326~1328,1335
    protein:W:10~82 797,818,1654,1773,1829,1885
    protein:X:1~56 121,149,1695,1836~1837
    protein:Z:1~92 170,390,2121,2318,2434~2435,24
    59
    protein:1:1~172 2567,2704
    59 1ffy:T
    (2.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E234 RF00005 Escherichia
    coli
    562    		 10446055 Assembly1
    protein:A:1~917 3~5,11~13,23~25,31~35,37~42,68
    ~72,74
    60 1fje:A

    		 22 N/A URS000080DFB3 N/A synthetic
    construct
    32630    		 11118222 Assembly1
    protein:B:1~175 8~16
    61 1fjg:A
    (3.0Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11014183 Assembly1
    protein:B:7~243 829,1073~1075,1097~1098,1100~1
    104,1158
    protein:C:2~207 421,532,1055~1061,1106~1109,11
    11~1113,1189~1191,1205~1206
    protein:D:2~209 8,400~413,426~430,437~438,490,
    508~509,511~512,541~547,612~61
    3,619~620
    protein:E:5~154 5~9,15,18~19,559,921~923,1070,
    1072~1073,1078~1081,1396~1398
    protein:F:1~101 670,673~674,711,736~739
    protein:G:2~156 932~933,935,939~940,1092,1240~
    1241,1290~1292,1297~1298,1346,
    1350~1351,1372~1380
    protein:H:1~138 586~587,590,597~600,640~644,65
    3,753,825~826,828,861,875~878
    protein:I:2~128 967,1117~1119,1127~1130,1147~1
    149,1178~1180,1186~1187,1231~1
    233,1248~1251,1291~1292,1342~1
    350,1367~1373
    protein:J:3~100 963~964,969,972~973,1059~1061,
    1123~1125,1150~1153,1189,1198~
    1199,1254~1255,1279~1280,1366~
    1368
    protein:K:11~129 675~677,683~686,688~692,694~69
    5,704,706~708,716,718,777~780,
    797,1523,1525
    protein:L:5~129 24,33~37,49,302~303,362~363,50
    0~503,518~523,525~526,528~529,
    537~539,552~553,556,562,564,56
    7~568,585,880~881,909,911~913,
    1412,1490~1492
    protein:M:2~126 947~954,965,969~970,1225~1230,
    1297,1302,1306~1310,1321,1328~
    1331
    protein:N:2~61 973~976,979~983,994~995,1015~1
    016,1047~1049,1059~1060,1114~1
    115,1186~1189,1202~1203,1216,1
    219,1316~1317,1358~1359
    protein:O:2~89 579~582,656~660,666~669,728,73
    0,739~742,750~754,808
    protein:P:1~83 43~44,110,112,134~137,227~230,
    310,375~377,390~393,449~450,45
    2~453,462~463,474,608,617,624~
    626
    protein:Q:2~105 127~130,190E,234~238,246~247,2
    53~256,264~267,273,275~280,564
    ,581~583,760~761,896
    protein:R:16~88 664,673~674,718~720,734~736,83
    5
    protein:S:2~85 955,957~959,978,986~987,1014~1
    015,1219~1223,1225~1227,1310~1
    316,1318~1322
    protein:T:8~106 61,102~104,107~108,132,176~177
    ,185~188,190L,191~195,223,259~
    263,322~325,333,1438~1439,1454
    ~1455,1459
    protein:V:2~25 1235~1236,1242,1244,1267~1270,
    1285~1286,1304~1305,1325~1329,
    1352~1353,1364
    62 1fka:A
    (3.3Å)
    		 1479 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE86 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11007480 Assembly1
    protein:C:1~819 1039,1088
    protein:D:49~209 8~9,403,492,597,604
    protein:E:1~157 11,841
    protein:F:1~97 720~722
    protein:G:3~146 910,1329,1351,1353,1355,1357
    protein:H:3~138 570~571,574,583,626,854~856
    protein:I:1~307 1271,1322
    protein:J:1~237 1042,1233
    protein:L:1~180 358,504
    protein:O:2~89 650~652,712,723~725,735,738
    protein:Q:1~128 121,242,270,273,276,567,619~62
    0,744
    protein:S:8~80 963~964,993~994,1201~1202,1205
    ,1299~1300
    protein:T:7~101 98,181~182,200~201
    63 1fnx:R

    		 10 N/A URS000080E2CA N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:H:35~208 1~9
    64 1g1x:D
    (2.6Å)
    		 40 N/A URS000080E268 N/A synthetic
    construct
    32630    		 10753109 Assembly1
    protein:B:1~88 656~659,667~669
    65 1g1x:E
    (2.6Å)
    		 44 N/A URS000080E2CD N/A synthetic
    construct
    32630    		 10753109 Assembly1
    protein:A:1~98 736~738
    protein:B:1~88 728~730,739~741,750~755
    protein:C:30~82 718~720,735~736
    66 1g1x:I
    (2.6Å)
    		 41 N/A URS000080E268 N/A synthetic
    construct
    32630    		 10753109 Assembly2
    protein:F:1~98 670,673
    protein:G:1~88 656~659,667~669
    protein:H:30~82 664,674
    67 1g1x:J
    (2.6Å)
    		 44 N/A URS000080E2CD N/A synthetic
    construct
    32630    		 10753109 Assembly2
    protein:F:1~98 736~738
    protein:G:1~88 728,730,739~741,750~755
    protein:H:30~82 718~720,735~736
    68 1g2e:B
    (2.3Å)
    		 10 N/A URS000080DEA2 N/A synthetic
    construct
    32630    		 11175903 Assembly1
    protein:A:37~203 2~11
    69 1g59:B
    (2.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000052BB59 RF00005 Thermus
    thermophilus
    274    		 11224561 Assembly1
    protein:A:1~468 503,505~506,511~514,524~525,53
    4~539,569~571,573~576
    70 1g59:D
    (2.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000052BB59 RF00005 Thermus
    thermophilus
    274    		 11224561 Assembly2
    protein:C:1~468 503~506,511~515,524~525,534~53
    9,569~570,573~576
    71 1g70:A

    		 32 N/A URS000080E35A N/A Human
    immunodeficiency
    virus
    1
    11676    		 11175904 Assembly1
    protein:B:7~22 45~47,64,66~71,73
    72 1gax:C
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004A2E91 RF00005 Thermus
    thermophilus
    274    		 11114335 Assembly1
    protein:A:1 905,911~914,918~920,923~924,93
    4~935,937~939,941,943,955,973~
    975
    73 1gax:D
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004A2E91 RF00005 Thermus
    thermophilus
    274    		 11114335 Assembly2
    protein:B:1 905,911~915,918~919,923~924,93
    0,932,934~935,937~940,955,973~
    975
    74 1gtf:W
    (1.75Å)
    		 44 N/A URS000080DEEF N/A synthetic
    construct
    32630    		 11914485
    10499579    		 Assembly2
    protein:L:5~74 103~104,106~108
    protein:M:5~75 108~109,111~113
    protein:N:5~74 113~114,116~118
    protein:O:5~74 118~119,121~123
    protein:P:5~74 123~124,126~128
    protein:Q:5~74 128~129,131~133
    protein:R:5~74 133~134,136~138
    protein:S:5~74 138~139,141~143
    protein:T:5~74 143~144,146~148
    protein:U:5~74 148~149,151~153
    protein:V:5~74 101~103,153~154
    75 1gtn:W
    (2.5Å)
    		 44 N/A URS000080DF39 N/A synthetic
    construct
    32630    		 11914485
    10499579    		 Assembly2
    protein:L:5~74 103~104,106~108
    protein:M:5~75 108~109,111~113
    protein:N:5~74 113~114,116~118
    protein:O:5~75 118~119,121~123
    protein:P:5~74 123,126~128
    protein:Q:5~74 128,131~133
    protein:R:5~74 133~134,136~138
    protein:S:5~74 138~139,141~143
    protein:T:5~74 143~144,146~148
    protein:U:5~74 148,151~153
    protein:V:5~74 101~103,153
    76 1gtr:B
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000541BD0 RF00005 Escherichia
    coli
    562    		 1857417 Assembly1
    protein:A:8 2~8,11~14,25,27,34~38,69,71~76
    77 1gts:B
    (2.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000541BD0 RF00005 Escherichia
    coli
    562    		 8364025 Assembly1
    protein:A:8 2~7,11~14,16,25,27,34~38,72~76
    78 1h3e:B
    (2.9Å)
    		 84 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DF5D RF00005 Thermus
    thermophilus
    274    		 12110594 Assembly1
    protein:A:6~432 28~30,34~36,42~43,46~47,47A,47
    B,68~69
    protein:A-2:6~432 1,67,69,71~73
    79 1h4q:T
    (3.0Å)
    		 67 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE47 RF00005 Thermus
    thermophilus
    274    		 11399074
    10970866
    10666603
    10666604
    9493271    		 Assembly1
    protein:A:5~477 27~29,44
    protein:B:5~477 34~38
    80 1h4s:T
    (2.85Å)
    		 67 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE47 RF00005 Thermus
    thermophilus
    274    		 11399074
    10970866
    10666603
    10666604
    9493271    		 Assembly1
    protein:A:5~477 10,27~29,44
    protein:B:5~477 34~38
    81 1hc8:C
    (2.8Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E180 RF02541
    RF02540    		 Escherichia
    coli
    562    		 12054794
    10325228    		 Assembly1
    protein:A:2~75 109~110,112~114,126~132,138
    82 1hc8:D
    (2.8Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E180 RF02541
    RF02540    		 Escherichia
    coli
    562    		 12054794
    10325228    		 Assembly2
    protein:B:206~275 309~310,312~314,326~332,338
    83 1hji:A

    		 15 N/A URS000080E1C6 N/A Lambdavirus
    lambda
    10710    		 11356847
    10759866    		 Assembly1
    protein:B:19~44 2~9
    84 1hnw:A
    (3.4Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    protein:B:7~240 829,1073~1076,1101~1104
    protein:C:2~207 421,532,1055~1058,1060~1061,11
    06~1109,1111~1113,1189~1192,12
    05~1206,1256
    protein:D:2~209 8,401~412,426~430,436~438,489,
    496,508~509,511~512,541~547,61
    6,619~620
    protein:E:5~154 5~10,15~16,18~20,559~560,921~9
    23,1069~1070,1072~1074,1077~10
    81,1192~1194,1397
    protein:F:1~101 673~674,711,736~739
    protein:G:2~156 932~933,935,939~940,1092,1239~
    1241,1290~1292,1297~1298,1346,
    1350~1351,1372~1380
    protein:H:1~138 586~590,597~600,640~643,653,75
    3,825~826,861,875~878
    protein:I:2~128 967~968,1117~1119,1127~1131,11
    47~1149,1178~1180,1186~1187,12
    31~1233,1248~1251,1291~1292,13
    42~1350,1366~1373
    protein:J:3~100 963~964,969,972~973,975,1059~1
    061,1123~1125,1150~1153,1189,1
    198~1199,1254~1255,1279~1280,1
    366~1368
    protein:K:11~129 675~676,683~685,688~692,694~69
    5,704,706~708,716,718,778~780,
    1523~1525
    protein:L:5~128 33~37,363,500~503,518~523,527~
    529,537~539,552,562,564,567~56
    8,880~881,910~911,913,1491~149
    2
    protein:M:2~126 947~954,965,969~970,1225~1231,
    1295~1297,1302,1306~1310,1321,
    1328~1330
    protein:N:2~61 973~976,979~983,994~995,1047~1
    049,1060,1114~1115,1186~1189,1
    202~1203,1216~1217,1219,1316~1
    317,1358~1359
    protein:O:2~89 579~582,656~660,666~669,728~73
    0,739~742,750~755,808
    protein:P:1~88 43~44,110,112,134~136,227~230,
    310,375~377,390~393,449~450,45
    2~453,463,474,608~609,617,624~
    626
    protein:Q:2~105 127~130,190E,234~238,246~247,2
    53~256,264~267,275~280,564,581
    ~582,585~586,635~636,760~761
    protein:R:16~88 664,718~720,734~736,834~836
    protein:S:2~81 957~958,960,978,986~987,1014,1
    219~1227,1310~1315,1318~1322
    protein:T:8~106 102~105,107~108,132~133,176~17
    7,185~188,190L,191~195,259~263
    ,322~325,332~333,1439,1453~145
    5,1459~1460
    protein:V:2~25 1235~1236,1242~1243,1267~1268,
    1286,1304~1305,1325~1329,1352~
    1353,1364
    85 1hnx:A
    (3.4Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    protein:B:7~240 829,1073~1076,1101~1104
    protein:C:2~207 421,532,1055~1060,1106~1109,11
    11~1113,1189~1193,1205~1206,12
    56
    protein:D:2~209 8,401~412,426~430,437~438,490,
    496,508~509,511~512,541~547,61
    6,619~620
    protein:E:5~154 5~9,15~16,18~19,559~560,921~92
    3,1069~1071,1073~1074,1077~108
    1,1192,1194,1397
    protein:F:1~101 673~674,711,736~739
    protein:G:2~156 932~933,935,939~940,1092,1239~
    1241,1290~1292,1297~1298,1346,
    1350~1351,1372~1380
    protein:H:1~138 586~590,597~600,640~644,653,82
    4~826,861,875~878
    protein:I:2~128 967~968,1117~1119,1127~1131,11
    47~1149,1178~1180,1186~1187,12
    31~1233,1248~1251,1291~1292,13
    42~1344,1346~1350,1367~1373
    protein:J:3~100 963~964,972~973,1060~1061,1123
    ~1125,1150~1153,1189,1198~1199
    ,1254,1279~1280,1366~1368
    protein:K:11~129 675~677,683~686,688~692,694~69
    5,704,706~708,716,718,778~780,
    797~798,1523~1525
    protein:L:5~128 33~37,241,362~363,500~503,518~
    523,527~529,537~539,552~553,56
    2,564,567~568,585,880~881,909~
    911,913
    protein:M:2~126 947~954,969~970,1225~1231,1297
    ,1302,1306~1310,1321,1328~1330
    protein:N:2~61 973~976,979~983,994~995,1015~1
    016,1047~1049,1059~1060,1114~1
    115,1186~1188,1202~1203,1216~1
    217,1219,1316~1317,1358~1359
    protein:O:2~89 579,581~582,656~660,666~669,72
    8~730,739~742,750~755,764~765,
    808
    protein:P:1~88 44,110,112,134~137,227~230,310
    ,375~377,390~393,449~450,452,4
    62~463,474,608,617,624~626
    protein:Q:2~105 127~130,190E,234~237,246~247,2
    53~256,264~267,275~280,564,581
    ~582,585~586,636,760~761
    protein:R:16~88 663~664,674,718~720,735~736,83
    5~836
    protein:S:2~81 957~958,978,986~987,1014,1219~
    1227,1310~1315,1318~1322
    protein:T:8~106 102~104,106~108,133,175~177,18
    5~188,190L,191~195,259~263,322
    ~324,332~333,1438~1439,1453~14
    55,1459~1460
    protein:V:2~25 1235~1236,1243,1267~1269,1286,
    1304~1305,1325~1329,1352~1353,
    1364
    86 1hnz:A
    (3.3Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11163189 Assembly1
    protein:B:7~240 829,1073~1075,1101~1104
    protein:C:2~207 421,532,1055~1061,1106~1109,11
    11~1113,1189~1193,1205~1206,12
    56
    protein:D:2~209 8,401~412,426~430,437~438,489~
    490,496,508~509,511~512,540~54
    7,619~620
    protein:E:5~154 5~10,15~16,18~20,559,921~923,1
    069~1070,1072~1074,1078~1081,1
    192~1194,1396~1397
    protein:F:1~101 673~674,711,736~739
    protein:G:2~156 693,932~933,935,938~940,1092~1
    093,1239~1241,1290~1292,1298,1
    346,1351,1372~1380
    protein:H:1~138 586~590,597~600,640~643,653,82
    4~826,861,875~878
    protein:I:2~128 967~968,1117~1119,1127~1130,11
    47~1149,1178~1180,1186~1187,12
    31~1233,1248~1251,1291~1292,13
    42~1344,1346~1350,1366~1373
    protein:J:3~100 963~964,969,972~973,1059~1061,
    1123~1125,1150~1153,1189,1198~
    1199,1254~1255,1278~1280,1366~
    1368
    protein:K:11~129 675~677,683~686,688~692,694~69
    5,704,706~708,716,718,778~780,
    797~798,1523~1525
    protein:L:5~128 33~37,241,362~363,501~503,518~
    523,527~529,537~539,552~553,55
    6,562~564,567~568,880~882,909~
    913
    protein:M:2~126 947~954,965,969~970,1225~1231,
    1295,1297,1302,1306~1310,1321~
    1322,1328~1330
    protein:N:2~61 973~976,979~983,994~995,1047~1
    049,1060,1114~1115,1186~1189,1
    202~1203,1216~1217,1219,1316~1
    317,1358~1359
    protein:O:2~89 579~582,656~660,666~669,728,73
    0,739~742,750~755,764,808
    protein:P:1~88 44,110,134~137,227~230,310,375
    ~377,390~393,449~450,452,462~4
    63,474,608,617,624~626
    protein:Q:2~105 127~130,190E,234~237,246~247,2
    53~256,264~267,275~280,564,581
    ~582,586,635~636,760~761
    protein:R:16~88 664,673~674,718~720,734~736,83
    4~835
    protein:S:2~81 957~958,978,986~987,1014~1015,
    1219~1223,1226~1227,1310~1315,
    1318~1322
    protein:T:8~106 102~104,107~108,132~133,176~17
    7,185~188,190L,191~195,259,261
    ~263,322~325,332~333,1438~1439
    ,1453~1455,1459~1460
    protein:V:2~25 1235~1236,1242,1244,1267~1269,
    1285~1286,1304~1305,1325~1329,
    1352~1353,1364
    87 1hq1:B
    (1.52Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DD2B RF00169 synthetic
    construct
    32630    		 11243816 Assembly1
    protein:A:1~83 139~141,148~151,163~164
    88 1hr0:A
    (3.2Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11228145 Assembly1
    protein:B:7~240 829,1073~1075,1100~1104,1158
    protein:C:2~207 421,532,1055~1061,1106~1109,11
    11~1113,1189~1193,1205~1206,12
    56
    protein:D:2~209 8,400~412,426~430,437~438,489~
    490,496,508~509,511~512,541~54
    7,616,619~620
    protein:E:5~154 5~10,15~16,18~19,559,921~923,1
    069~1070,1072~1074,1078~1081,1
    192,1194,1398
    protein:F:1~101 673~674,710~711,736~739
    protein:G:2~156 693,932~933,935,939~940,1092,1
    239~1241,1290~1292,1297~1298,1
    346,1350~1351,1372~1380
    protein:H:1~138 586~587,589~591,597~600,640~64
    4,653,753,825~826,861,875~878
    protein:I:2~128 967~968,1117~1119,1128~1131,11
    47~1149,1178~1179,1186~1187,12
    31~1233,1248~1251,1291~1292,13
    42~1344,1346~1350,1366~1373
    protein:J:3~100 963~964,969,972~973,975,1060~1
    061,1123~1125,1150~1153,1189,1
    198,1254~1255,1279~1280,1366~1
    368
    protein:K:11~129 675~676,683~686,688~692,694~69
    5,704,706~708,716~718,778~780,
    1523~1525
    protein:L:5~128 33~37,363,501~503,518~523,528~
    529,537~539,551~553,556,562,56
    4,567~568,880~881,909~913,1411
    ~1412,1490,1492
    protein:M:2~126 947~954,965,969~970,1225~1230,
    1296~1297,1302,1306~1310,1321,
    1328~1330
    protein:N:2~61 973~976,979~983,994~995,1015,1
    047~1049,1059~1060,1114~1115,1
    186~1189,1202~1203,1216~1217,1
    219,1316~1317,1358~1359
    protein:O:2~89 579,581~582,656~660,666~669,72
    8~730,739~742,750~755,764,808
    protein:P:1~83 43~44,110,112,134~137,227~230,
    310~311,375~377,390~393,449~45
    0,452~453,462~463,474,608,617,
    624~626
    protein:Q:2~105 127~130,190E,234~238,246~247,2
    53~256,264~267,273,275~280,564
    ,581~583,585,635~636,760~761,8
    96~897
    protein:R:16~88 663~664,673,718~720,734~736,83
    5~836
    protein:S:2~81 957~959,986~987,1014,1219~1225
    ,1227,1310~1316,1318~1321
    protein:T:8~106 102~104,106~108,132~133,176~17
    7,185~188,190L,191~195,223,259
    ~263,322~324,332~333,1438~1439
    ,1453~1455,1459~1460
    protein:V:2~25 1235~1236,1242~1244,1267~1269,
    1285~1286,1304~1305,1325~1329,
    1352~1353,1364
    protein:W:1~71 516~519,530~531,1409,1411,1491
    ~1494
    89 1hvu:C
    (4.75Å)
    		 30 N/A URS000080DE33 N/A synthetic
    construct
    32630    		 9687519
    7529124    		 Assembly1
    protein:A:1~554 17~18,32~33
    protein:B:5~427 9,14
    90 1hvu:F
    (4.75Å)
    		 30 N/A URS000080DE33 N/A synthetic
    construct
    32630    		 9687519
    7529124    		 Assembly2
    protein:D:1~554 17~18,32~33
    protein:E:5~427 9,14
    91 1hvu:I
    (4.75Å)
    		 30 N/A URS000080DE33 N/A synthetic
    construct
    32630    		 9687519
    7529124    		 Assembly3
    protein:G:1~554 17~18,32~33
    protein:H:5~427 9,14
    92 1hvu:L
    (4.75Å)
    		 30 N/A URS000080DE33 N/A synthetic
    construct
    32630    		 9687519
    7529124    		 Assembly4
    protein:J:1~554 17~18,32~33
    protein:K:5~427 9,14
    93 1hys:E
    (3.0Å)
    		 23 N/A URS000080DEF6 N/A synthetic
    construct
    32630    		 11250910 Assembly1
    protein:A:1~553 854~858,860,862~863,872~874
    94 1i6u:C
    (2.6Å)
    		 37 N/A URS000080E0AA N/A synthetic
    construct
    32630    		 11478863 Assembly1
    protein:A:2~130 4~5,12~16,24~27,36~37
    95 1i6u:D
    (2.6Å)
    		 37 N/A URS000080E0AA N/A synthetic
    construct
    32630    		 11478863 Assembly2
    protein:B:4~130 4~5,13~16,24~27
    96 1i94:A
    (3.2Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E19C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11296217 Assembly1
    protein:B:2~250 1056,1083~1084
    protein:C:2~207 416,515,1037~1039,1042~1043,10
    89,1093~1094,1171,1187
    protein:D:2~209 5,8,399~400,402~404,407,421~42
    2,425,524,529~530,602
    protein:E:2~157 6~8,10,15~16,19,898~900,1063,1
    175
    protein:G:2~156 676,1221,1331~1332,1354,1359,1
    361~1362
    protein:H:1~138 570,573,582~583,623~625,637,80
    7,854~855
    protein:I:2~128 943,1099,1213,1231,1272,1324~1
    325,1328~1330,1349~1351,1353~1
    355
    protein:J:3~100 949,1042,1105~1106,1132~1133,1
    183,1234
    protein:K:7~129 658~659,667~668,671~675,678,69
    0~691,699~701,762,1511~1512
    protein:L:5~135 35~37,358,482,485,501,503~504,
    512,521,535,545,888
    protein:M:2~94 1309~1311
    protein:N:2~61 952~953,956~957,1030~1031,1183
    ~1184,1197,1339
    protein:O:2~89 651,723~724,733~734
    protein:P:1~88 103,130~131,304~305,370~372,38
    7,443~444,457,607~608
    protein:Q:2~105 120~121,242,249~250,259~260,27
    0,273,275,547,745,874
    protein:R:7~88 701~703,818
    protein:S:2~81 935,963,992,1201,1293~1294,130
    1
    protein:T:8~106 180~181,197~200,318,1435
    protein:U:2~25 1217,1225,1249~1250,1285~1286,
    1308
    97 1i95:A
    (4.5Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E19C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11296217 Assembly1
    protein:C:2~207 1039,1042,1089,1093~1094
    protein:D:2~209 8,404,425,529
    protein:E:2~157 8,1175
    protein:G:2~156 1221,1362
    protein:H:1~138 582,625
    protein:I:2~128 1231~1232,1329,1350,1353~1354
    protein:J:3~100 1042,1105~1106,1132~1133
    protein:K:7~129 659,672,691,1512
    protein:L:5~135 35~36,521
    protein:M:2~94 1310~1311
    protein:N:2~61 971,1184
    protein:P:1~88 131,305,387,443
    protein:Q:2~105 260,275
    protein:S:2~81 963,1201~1202,1301
    protein:T:8~106 180~181,197~199,318,1435
    protein:U:2~25 1249,1285~1286
    98 1i96:A
    (4.2Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E19C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11296217 Assembly1
    protein:C:2~207 1042,1089,1093~1094,1187
    protein:D:2~209 8,400,402,404,425,529
    protein:H:1~138 582,625
    protein:I:2~128 1231,1349~1350,1353~1354
    protein:J:3~100 1042,1105~1106,1132
    protein:K:7~129 672,678,691,699,1512
    protein:L:5~135 36,504~505
    protein:N:2~61 953,1339
    protein:P:1~88 131,305
    protein:Q:2~105 120,189,260,275
    protein:S:2~81 1294,1301
    protein:T:8~106 180~181,197~199,318
    protein:U:2~25 1249,1285~1286
    99 1i97:A
    (4.5Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E19C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 11296217 Assembly1
    protein:C:2~207 515,1038,1089,1094,1171
    protein:D:2~209 8,425,529
    protein:E:2~157 8,899,1175
    protein:I:2~128 1231,1272,1324,1329~1330,1351,
    1353~1354
    protein:J:3~100 1042,1105,1132~1133
    protein:K:7~129 668,672,699,701
    protein:L:5~135 37,501,504,535~536,545
    protein:M:2~94 1310~1311
    protein:N:2~61 953,957,971,1030
    protein:O:2~89 722,724,733~734
    protein:P:1~88 304~305,590
    protein:Q:2~105 260,275,875
    protein:T:8~106 180,199
    protein:U:2~25 1249~1250,1286
    100 1i9f:A

    		 34 N/A URS000080E35B N/A synthetic
    construct
    32630    		 11358697 Assembly1
    protein:B:201~219 6~7,19~24,26~28
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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