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Download all results in tab-seperated text for 19236 RNAs.

Click the entry in the '#' column to view structure details of that RNA chain.

Hover over PDB to view the title of the structure.

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Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

Sort results by PDB ID Length RNAcentral Resolution

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	ATtRACT motif	Ligand & binding nucleotides
1	157d:A (1.8Å)	12	N/A	URS000080E0B7	N/A	synthetic construct 32630	7922026		Assembly1 rna:B:13~24 1~12
2	157d:B (1.8Å)	12	N/A	URS000080E0B7	N/A	synthetic construct 32630	7922026		Assembly1 rna:A:1~12 13~24
3	17ra:A	21	N/A	URS000080DE9D	N/A	synthetic construct 32630	9753434
4	1a1t:B	20	N/A	URS000080DD5B	N/A	synthetic construct 32630	9430589		Assembly1 protein:A:1 203~204,206,208,210~214
5	1a34:B (1.81Å)	10	N/A	URS000080DEB3	N/A	synthetic construct 32630	9514737		Assembly1 rna:C:1~10 1,3~9 rna:B-6:1~10 1~9 rna:C-6:1~10 1~10 protein:A-6:13~159 6~8 U:B:11 8~9
6	1a34:C (1.81Å)	10	N/A	URS00002C5188	N/A	synthetic construct 32630	9514737		Assembly1 protein:A:13~159 7~8 protein:A-34:13~159 4~5 rna:B:1~10 1~9 rna:B-6:1~10 1~10 U:B-6:11 8~9
7	1a3m:A	14	N/A	URS000080DDDA	N/A	synthetic construct 32630	9514734		Assembly1 rna:B:15~27 1~14
8	1a3m:B	13	N/A	URS000080E25F	N/A	synthetic construct 32630	9514734		Assembly1 rna:A:1~14 15~19,21~27
9	1a4d:A	21	N/A	URS000080E377	N/A	Escherichia coli 562	9438864		Assembly1 rna:B:89~108 68~86,88
10	1a4d:B	20	N/A	URS000080DFD5	N/A	Escherichia coli 562	9438864		Assembly1 rna:A:68~88 89~108
11	1a4t:A	15	N/A	URS000080E159	N/A	synthetic construct 32630	9501914		Assembly1 protein:B:1~19 4~9,11~12,14~15
12	1a51:A	41	N/A	URS000080DF00	N/A	Escherichia coli 562	9438864
13	1a60:A	44	GO:0006417 (P) regulation of translation	URS000080E316	RF00233	Turnip yellow mosaic virus 12154	9545221
14	1a9l:A	38	N/A	URS000080E0DA	N/A	Haloferax volcanii 2246	9660971
15	1a9n:Q (2.38Å)	24	N/A	URS000080E0B0	N/A	Homo sapiens 9606	9716128	504	Assembly1 protein:B:6~99 1,4~13,15~17
16	1a9n:R (2.38Å)	24	N/A	URS000080E0B0	N/A	Homo sapiens 9606	9716128	504	Assembly2 protein:D:6~98 5~13,15~17
17	1ac3:B	12	N/A	URS000080DF5F	N/A	synthetic construct 32630	9100003		Assembly1 dna:A:1~12 13~24
18	1afx:A	12	N/A	URS000080E30D	N/A	synthetic construct 32630	10074938
19	1ajf:A	18	N/A	URS000080DF9D	N/A	synthetic construct 32630	9195889		Assembly1 NCO:A:19 5~7
20	1ajl:A	12	N/A	URS000080E014	N/A	Tetrahymena thermophila 5911	9254623		Assembly1 rna:B:18~24 2~6,10~13
21	1ajt:A	12	N/A	URS000080E014	N/A	synthetic construct 32630	9254623		Assembly1 rna:B:18~24 2~5,10~13
22	1aju:A	30	N/A	URS000080E090	N/A	synthetic construct 32630	9126842		Assembly1 ARG:A:47 22~23,26,37~38
23	1akx:A	30	N/A	URS000080E090	N/A	synthetic construct 32630	9126842		Assembly1 ARG:A:47 22~23,26,37
24	1al5:A	12	N/A	URS000080E287	N/A	synthetic construct 32630	9185574		Assembly1 rna:B:1~12 1~12
25	1al5:B	12	N/A	URS000080E287	N/A	synthetic construct 32630	9185574		Assembly1 rna:A:1~12 1~12
26	1am0:A	16	N/A	URS000080E211	N/A	synthetic construct 32630	8700212		Assembly1 AMP:A:41 8,10~12,17~18,34
27	1anr:A	29	N/A	URS000080E14B	N/A	Human immunodeficiency virus 1 11676	8918800
28	1aq3:R (2.8Å)	16	N/A	URS000080DDB6	N/A	synthetic construct 32630	9469847		Assembly1 protein:A:1~129 3,11~12 protein:B-5:1~129 6,8~9
29	1aq3:S (2.8Å)	12	N/A	URS000080DDB6	N/A	synthetic construct 32630	9469847		Assembly1 protein:C:1~129 11~12 protein:C-6:1~129 6,8~9 rna:S-6:4~15 4~9,12~15
30	1aq4:R (3.0Å)	16	N/A	URS000080DDB6	N/A	Escherichia phage MS2 12022	9469847		Assembly1 protein:A:1~129 11~12 protein:B-5:1~129 6,8~9
31	1aq4:S (3.0Å)	14	N/A	URS000080DDB6	N/A	Escherichia phage MS2 12022	9469847		Assembly1 protein:C:1~129 11~12 protein:C-6:1~129 6,8~9 rna:S-6:3~16 3~9,12~16
32	1aqo:A	29	N/A	URS000080E297	N/A	synthetic construct 32630	9398517
33	1arj:N	29	N/A	URS000080E14B	N/A	synthetic construct 32630	7563092		Assembly1 ARG:N:1 22~23,26,37
34	1asy:R (2.9Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00005AD0B9	RF00005	Saccharomyces cerevisiae 4932	2047877		Assembly1 protein:A:68~557 601,610,612,625,627~628,630,63 2~638,668,672~676
35	1asy:S (2.9Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00005AD0B9	RF00005	Saccharomyces cerevisiae 4932	2047877		Assembly1 protein:B:68~557 601,612,625~626,632,634~638,66 8,672~676
36	1asz:R (3.0Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00005AD0B9	RF00005	Saccharomyces cerevisiae 4932	8313877		Assembly1 protein:A:68~557 601,610,612,626,628,632~638,66 7~668,672~676
37	1asz:S (3.0Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00005AD0B9	RF00005	Saccharomyces cerevisiae 4932	8313877		Assembly1 protein:B:68~557 601,610~612,626~627,632~638,66 8,672~676
38	1ato:A	19	N/A	URS000080DEA9	N/A	Hepatitis delta virus 12475	9218809
39	1atv:A	17	N/A	URS000080E1D5	N/A	synthetic construct 32630	N/A
40	1atw:A	15	N/A	URS000080E036	N/A	synthetic construct 32630	N/A
41	1aud:B	30	N/A	URS000080DECF	N/A	synthetic construct 32630	9312034		Assembly1 protein:A:1~101 24~25,39~45
42	1b23:R (2.6Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000003E908	RF00005	Escherichia coli 562	10368282		Assembly1 protein:P:1~405 1~3,51~54,63~67,74~76
43	1b36:A	38	N/A	URS000080E080	N/A	synthetic construct 32630	10074938
44	1b7f:P (2.6Å)	12	N/A	URS000080DF5A	N/A	Drosophila melanogaster 7227	10217141	398 1356	Assembly1 protein:A:123~289 3~12
45	1b7f:Q (2.6Å)	12	N/A	URS000080DF5A	N/A	Drosophila melanogaster 7227	10217141	398 1356	Assembly2 protein:B:123~289 3~6,8~12
46	1bau:A	23	N/A	URS000080E0ED	N/A	Human immunodeficiency virus 1 11676	9628479		Assembly1 rna:B:1~23 8~17
47	1bau:B	23	N/A	URS000080E0ED	N/A	Human immunodeficiency virus 1 11676	9628479		Assembly1 rna:A:1~23 8~17
48	1bgz:A	23	N/A	URS000080E0C6	N/A	synthetic construct 32630	9677294
49	1biv:A	28	N/A	URS000080DE03	N/A	synthetic construct 32630	8807816		Assembly1 protein:B:65~81 4~5,8~11,13~15,17~25,27
50	1bj2:A	21	N/A	URS000080DDBD	N/A	synthetic construct 32630	9739090		Assembly1 rna:B:1~19 7~15
51	1bj2:B	19	N/A	URS000080E325	N/A	synthetic construct 32630	9739090		Assembly1 rna:A:1~21 6~13
52	1bmv:M (3.0Å)	11	N/A	URS000080DDDC	N/A	synthetic construct 32630	2749253		Assembly1 protein:2:3001~2192 1,3~4
53	1bn0:A	20	N/A	URS000080DD5B	N/A	synthetic construct 32630	9743628
54	1br3:A (3.0Å)	13	N/A	URS000080E30B	N/A	synthetic construct 32630	10048927		Assembly1 dna:B:14~41 1~6 dna:B-2:14~41 7~13
55	1bvj:A	23	N/A	URS000080DF37	N/A	Human immunodeficiency virus type 1 (MAL ISOLATE) 11697	9846871
56	1byj:A	27	N/A	URS000080DE29	N/A	synthetic construct 32630	9822590		Assembly1 GE1:A:28 7,19~21 GE2:A:29 6,21~22 GE3:A:30 3~5
57	1bz2:A	17	N/A	URS000080DF59	N/A	synthetic construct 32630	9878393
58	1bz3:A	17	N/A	URS000080DF59	N/A	synthetic construct 32630	9878393
59	1bzt:A	17	N/A	URS000080DF59	N/A	synthetic construct 32630	9878393
60	1bzu:A	17	N/A	URS000080DF59	N/A	synthetic construct 32630	9878393
61	1c04:E (5.0Å)	58	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E180	RF02541 RF02540	Haloarcula marismortui 2238	10476961		Assembly1 protein:C:6~72 9~15,26~27,29~32
62	1c04:F (5.0Å)	29	N/A	URS000080DE8B	N/A	Haloarcula marismortui 2238	10476961
63	1c0a:B (2.4Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000009EE82	RF00005	Escherichia coli 562	10562565		Assembly1 protein:A:1~585 610~612,625,628,632~636,638,66 7~676
64	1c0o:A	14	N/A	URS000080DE5A	N/A	Tetrahymena thermophila 5911	10388561		Assembly1 NCO:A:15 2~4,11~12
65	1c2w:B (7.5Å)	2904	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E326	RF02540 RF02541	Escherichia coli 562	10756104
66	1c2x:C (7.5Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli 562	10756104
67	1c9s:W (1.9Å)	55	N/A	URS000080E375	N/A	synthetic construct 32630	10499579		Assembly2 protein:L:5~74 101~106 protein:M:5~75 106~111 protein:N:5~74 111~116 protein:O:5~75 116~117,119~121 protein:P:5~74 121~122,124~126 protein:Q:5~74 126~127,129~131 protein:R:5~74 131~136 protein:S:5~74 136~141 protein:T:5~74 141~146 protein:U:5~74 146~147,149~151 protein:V:5~74 101,151~155
68	1cq5:A	43	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E0C0	RF00169	Escherichia coli 562	10580470
69	1cql:A	43	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E0C0	RF00169	Escherichia coli 562	10580470
70	1csl:A (1.6Å)	13	N/A	URS000080DDF9	N/A	synthetic construct 32630	10656783		Assembly1 rna:B:64~78 43~54
71	1csl:B (1.6Å)	15	N/A	URS000080E02D	N/A	synthetic construct 32630	10656783		Assembly1 rna:A:43~55 64~67,69~71,73~78
72	1cx5:B	12	N/A	URS000080DF5F	N/A	synthetic construct 32630	10504227		Assembly1 dna:A:1~12 101~112
73	1d0t:A	21	N/A	URS000080E365	N/A	synthetic construct 32630	10801314
74	1d0u:A	21	N/A	URS000080E365	N/A	synthetic construct 32630	10801314
75	1d4r:A (2.0Å)	29	N/A	URS000080DDD1	N/A	Homo sapiens 9606	10574798	s72	Assembly1 rna:B:1~29 1~14,16~28
76	1d4r:B (2.0Å)	29	N/A	URS000080DDD1	N/A	Homo sapiens 9606	10574798	s72	Assembly1 rna:A:1~29 1~13,16~28
77	1d4r:C (2.0Å)	29	N/A	URS000080DDD1	N/A	Homo sapiens 9606	10574798	s72	Assembly2 rna:C-2:1~29 2~28
78	1d6k:B	37	N/A	URS000080E091	N/A	synthetic construct 32630	10562563		Assembly1 protein:A:1~94 273~277,279,295~298,303~304,30 6
79	1ddy:A (3.0Å)	35	N/A	URS000080E03A	N/A	synthetic construct 32630	10625428		Assembly1 B12:A:101 14,16,29~31
80	1ddy:C (3.0Å)	35	N/A	URS000080E03A	N/A	synthetic construct 32630	10625428		Assembly2 B12:C:301 214,216,229~231
81	1ddy:E (3.0Å)	35	N/A	URS000080E03A	N/A	synthetic construct 32630	10625428		Assembly3 B12:E:501 414,416,429~430
82	1ddy:G (3.0Å)	35	N/A	URS000080E03A	N/A	synthetic construct 32630	10625428		Assembly4 B12:G:701 614,616,629~630
83	1dfu:M (1.8Å)	19	N/A	URS000080E19E	N/A	synthetic construct 32630	10696113		Assembly1 rna:N:68~86 91~107 protein:P:1~94 92,94~95,98,103~104
84	1dfu:N (1.8Å)	19	N/A	URS000080DF0F	N/A	synthetic construct 32630	10696113		Assembly1 rna:M:91~109 70~86 protein:P:1~94 73~80
85	1di2:C (1.9Å)	10	N/A	URS000080E216	N/A	synthetic construct 32630	9857205		Assembly1 rna:D:11~20 1~10 protein:A:112~180 5~7 protein:B:112~180 8~10
86	1di2:D (1.9Å)	10	N/A	URS000080E216	N/A	synthetic construct 32630	9857205		Assembly1 rna:C:1~10 11~20 protein:A:112~180 16~19 protein:B:112~180 13~16
87	1di2:E (1.9Å)	10	N/A	URS000080E216	N/A	synthetic construct 32630	9857205		Assembly2 rna:E-2:21~30 21~30
88	1di2:G (1.9Å)	10	N/A	URS000080E216	N/A	synthetic construct 32630	9857205		Assembly3 rna:G-3:41~50 41~48,50
89	1dk1:B (2.8Å)	57	N/A	URS000080E305	N/A	Thermus thermophilus 274	10742169		Assembly1 protein:A:101~186 20~23,30~33,37~41,49~54 NA:B:211 4,54~55
90	1dqf:B (2.2Å)	10	N/A	URS000080E151	N/A	synthetic construct 32630	10999608		Assembly1 rna:A:1~9 10~15,17~19
91	1dqh:B (1.7Å)	10	N/A	URS000080E151	N/A	synthetic construct 32630	10999608		Assembly1 rna:A:1~9 10~15,17~19
92	1drr:B	10	N/A	URS000080DFE7	N/A	synthetic construct 32630	9425027		Assembly1 dna:A:1~10 1~10
93	1drz:B (2.3Å)	72	EC:3.1.-.- GO:0004540 (F) RNA nuclease activity	URS000080E321	RF00094	Hepatitis delta virus 12475	9783582		Assembly1 protein:A:4~98 144,148~154,157~158 MG:B:402 169~170
94	1duh:A (2.7Å)	45	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E0AE	RF00169	synthetic construct 32630	10801497		Assembly1 rna:A-2:31~75 31~38,43~75 MG:A:2 59~60 SO4:A:4 48~49
95	1dul:B (1.8Å)	49	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080DD2B	RF00169	synthetic construct 32630	10678824		Assembly1 protein:A:1~82 139~141,148~151,163~164 K:B:701 146~147,163~165 K:B:702 135~137 K:B:703 149~150,161~163
96	1duq:A (2.1Å)	12	N/A	URS000080DFAD	N/A	synthetic construct 32630	10792052		Assembly1 rna:B:117 101~112
97	1duq:B (2.1Å)	14	N/A	URS000080DE8A	N/A	synthetic construct 32630	10792052		Assembly1 rna:A:101~112 117~120,122~124,126~130 NA:B:911 123~124
98	1duq:C (2.1Å)	12	N/A	URS000080DFAD	N/A	synthetic construct 32630	10792052		Assembly2 rna:D:217~230 201~212 NA:C:906 201~202 NA:C:913 201~202
99	1duq:D (2.1Å)	14	N/A	URS000080DE8A	N/A	synthetic construct 32630	10792052		Assembly2 rna:C:201~212 217~220,222~224,226~230 NA:C:904 223~224,226 NA:D:901 220~222
100	1duq:E (2.1Å)	12	N/A	URS000080DFAD	N/A	synthetic construct 32630	10792052		Assembly3 rna:F:317~330 301~312

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Reference:

Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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