SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 157d:A
    (1.8Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 7922026 Assembly1
    rna:B:13~24 1~12
    2 157d:B
    (1.8Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 7922026 Assembly1
    rna:A:1~12 13~24
    3 17ra:A

    		 21 N/A URS000080DE9D N/A synthetic
    construct
    32630    		 9753434
    4 1a1t:B

    		 20 N/A URS000080DD5B N/A synthetic
    construct
    32630    		 9430589 Assembly1
    protein:A:1 203~204,206,208,210~214
    5 1a34:B
    (1.81Å)
    		 10 N/A URS000080DEB3 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    rna:C:1~10 1,3~9
    rna:B-6:1~10 1~9
    rna:C-6:1~10 1~10
    protein:A-6:13~159 6~8
    U:B:11 8~9
    6 1a34:C
    (1.81Å)
    		 10 N/A URS00002C5188 N/A synthetic
    construct
    32630    		 9514737 Assembly1
    protein:A:13~159 7~8
    protein:A-34:13~159 4~5
    rna:B:1~10 1~9
    rna:B-6:1~10 1~10
    U:B-6:11 8~9
    7 1a3m:A

    		 14 N/A URS000080DDDA N/A synthetic
    construct
    32630    		 9514734 Assembly1
    rna:B:15~27 1~14
    8 1a3m:B

    		 13 N/A URS000080E25F N/A synthetic
    construct
    32630    		 9514734 Assembly1
    rna:A:1~14 15~19,21~27
    9 1a4d:A

    		 21 N/A URS000080E377 N/A Escherichia
    coli
    562    		 9438864 Assembly1
    rna:B:89~108 68~86,88
    10 1a4d:B

    		 20 N/A URS000080DFD5 N/A Escherichia
    coli
    562    		 9438864 Assembly1
    rna:A:68~88 89~108
    11 1a4t:A

    		 15 N/A URS000080E159 N/A synthetic
    construct
    32630    		 9501914 Assembly1
    protein:B:1~19 4~9,11~12,14~15
    12 1a51:A

    		 41 N/A URS000080DF00 N/A Escherichia
    coli
    562    		 9438864
    13 1a60:A

    		 44 GO:0006417 (P) regulation of translation URS000080E316 RF00233 Turnip
    yellow
    mosaic
    virus
    12154    		 9545221
    14 1a9l:A

    		 38 N/A URS000080E0DA N/A Haloferax
    volcanii
    2246    		 9660971
    15 1a9n:Q
    (2.38Å)
    		 24 N/A URS000080E0B0 N/A Homo
    sapiens
    9606    		 9716128
    504    		 Assembly1
    protein:B:6~99 1,4~13,15~17
    16 1a9n:R
    (2.38Å)
    		 24 N/A URS000080E0B0 N/A Homo
    sapiens
    9606    		 9716128
    504    		 Assembly2
    protein:D:6~98 5~13,15~17
    17 1ac3:B

    		 12 N/A URS000080DF5F N/A synthetic
    construct
    32630    		 9100003 Assembly1
    dna:A:1~12 13~24
    18 1afx:A

    		 12 N/A URS000080E30D N/A synthetic
    construct
    32630    		 10074938
    19 1ajf:A

    		 18 N/A URS000080DF9D N/A synthetic
    construct
    32630    		 9195889 Assembly1
    NCO:A:19 5~7
    20 1ajl:A

    		 12 N/A URS000080E014 N/A Tetrahymena
    thermophila
    5911    		 9254623 Assembly1
    rna:B:18~24 2~6,10~13
    21 1ajt:A

    		 12 N/A URS000080E014 N/A synthetic
    construct
    32630    		 9254623 Assembly1
    rna:B:18~24 2~5,10~13
    22 1aju:A

    		 30 N/A URS000080E090 N/A synthetic
    construct
    32630    		 9126842 Assembly1
    ARG:A:47 22~23,26,37~38
    23 1akx:A

    		 30 N/A URS000080E090 N/A synthetic
    construct
    32630    		 9126842 Assembly1
    ARG:A:47 22~23,26,37
    24 1al5:A

    		 12 N/A URS000080E287 N/A synthetic
    construct
    32630    		 9185574 Assembly1
    rna:B:1~12 1~12
    25 1al5:B

    		 12 N/A URS000080E287 N/A synthetic
    construct
    32630    		 9185574 Assembly1
    rna:A:1~12 1~12
    26 1am0:A

    		 16 N/A URS000080E211 N/A synthetic
    construct
    32630    		 8700212 Assembly1
    AMP:A:41 8,10~12,17~18,34
    27 1anr:A

    		 29 N/A URS000080E14B N/A Human
    immunodeficiency
    virus
    1
    11676    		 8918800
    28 1aq3:R
    (2.8Å)
    		 16 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9469847 Assembly1
    protein:A:1~129 3,11~12
    protein:B-5:1~129 6,8~9
    29 1aq3:S
    (2.8Å)
    		 12 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9469847 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    rna:S-6:4~15 4~9,12~15
    30 1aq4:R
    (3.0Å)
    		 16 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 9469847 Assembly1
    protein:A:1~129 11~12
    protein:B-5:1~129 6,8~9
    31 1aq4:S
    (3.0Å)
    		 14 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 9469847 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    rna:S-6:3~16 3~9,12~16
    32 1aqo:A

    		 29 N/A URS000080E297 N/A synthetic
    construct
    32630    		 9398517
    33 1arj:N

    		 29 N/A URS000080E14B N/A synthetic
    construct
    32630    		 7563092 Assembly1
    ARG:N:1 22~23,26,37
    34 1asy:R
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 2047877 Assembly1
    protein:A:68~557 601,610,612,625,627~628,630,63
    2~638,668,672~676
    35 1asy:S
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 2047877 Assembly1
    protein:B:68~557 601,612,625~626,632,634~638,66
    8,672~676
    36 1asz:R
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 8313877 Assembly1
    protein:A:68~557 601,610,612,626,628,632~638,66
    7~668,672~676
    37 1asz:S
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 8313877 Assembly1
    protein:B:68~557 601,610~612,626~627,632~638,66
    8,672~676
    38 1ato:A

    		 19 N/A URS000080DEA9 N/A Hepatitis
    delta
    virus
    12475    		 9218809
    39 1atv:A

    		 17 N/A URS000080E1D5 N/A synthetic
    construct
    32630    		 N/A
    40 1atw:A

    		 15 N/A URS000080E036 N/A synthetic
    construct
    32630    		 N/A
    41 1aud:B

    		 30 N/A URS000080DECF N/A synthetic
    construct
    32630    		 9312034 Assembly1
    protein:A:1~101 24~25,39~45
    42 1b23:R
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000003E908 RF00005 Escherichia
    coli
    562    		 10368282 Assembly1
    protein:P:1~405 1~3,51~54,63~67,74~76
    43 1b36:A

    		 38 N/A URS000080E080 N/A synthetic
    construct
    32630    		 10074938
    44 1b7f:P
    (2.6Å)
    		 12 N/A URS000080DF5A N/A Drosophila
    melanogaster
    7227    		 10217141
    398

    1356    		 Assembly1
    protein:A:123~289 3~12
    45 1b7f:Q
    (2.6Å)
    		 12 N/A URS000080DF5A N/A Drosophila
    melanogaster
    7227    		 10217141
    398

    1356    		 Assembly2
    protein:B:123~289 3~6,8~12
    46 1bau:A

    		 23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1
    11676    		 9628479 Assembly1
    rna:B:1~23 8~17
    47 1bau:B

    		 23 N/A URS000080E0ED N/A Human
    immunodeficiency
    virus
    1
    11676    		 9628479 Assembly1
    rna:A:1~23 8~17
    48 1bgz:A

    		 23 N/A URS000080E0C6 N/A synthetic
    construct
    32630    		 9677294
    49 1biv:A

    		 28 N/A URS000080DE03 N/A synthetic
    construct
    32630    		 8807816 Assembly1
    protein:B:65~81 4~5,8~11,13~15,17~25,27
    50 1bj2:A

    		 21 N/A URS000080DDBD N/A synthetic
    construct
    32630    		 9739090 Assembly1
    rna:B:1~19 7~15
    51 1bj2:B

    		 19 N/A URS000080E325 N/A synthetic
    construct
    32630    		 9739090 Assembly1
    rna:A:1~21 6~13
    52 1bmv:M
    (3.0Å)
    		 11 N/A URS000080DDDC N/A synthetic
    construct
    32630    		 2749253 Assembly1
    protein:2:3001~2192 1,3~4
    53 1bn0:A

    		 20 N/A URS000080DD5B N/A synthetic
    construct
    32630    		 9743628
    54 1br3:A
    (3.0Å)
    		 13 N/A URS000080E30B N/A synthetic
    construct
    32630    		 10048927 Assembly1
    dna:B:14~41 1~6
    dna:B-2:14~41 7~13
    55 1bvj:A

    		 23 N/A URS000080DF37 N/A Human
    immunodeficiency
    virus
    type
    1
    (MAL
    ISOLATE)
    11697    		 9846871
    56 1byj:A

    		 27 N/A URS000080DE29 N/A synthetic
    construct
    32630    		 9822590 Assembly1
    GE1:A:28 7,19~21
    GE2:A:29 6,21~22
    GE3:A:30 3~5
    57 1bz2:A

    		 17 N/A URS000080DF59 N/A synthetic
    construct
    32630    		 9878393
    58 1bz3:A

    		 17 N/A URS000080DF59 N/A synthetic
    construct
    32630    		 9878393
    59 1bzt:A

    		 17 N/A URS000080DF59 N/A synthetic
    construct
    32630    		 9878393
    60 1bzu:A

    		 17 N/A URS000080DF59 N/A synthetic
    construct
    32630    		 9878393
    61 1c04:E
    (5.0Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E180 RF02541
    RF02540    		 Haloarcula
    marismortui
    2238    		 10476961 Assembly1
    protein:C:6~72 9~15,26~27,29~32
    62 1c04:F
    (5.0Å)
    		 29 N/A URS000080DE8B N/A Haloarcula
    marismortui
    2238    		 10476961
    63 1c0a:B
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Escherichia
    coli
    562    		 10562565 Assembly1
    protein:A:1~585 610~612,625,628,632~636,638,66
    7~676
    64 1c0o:A

    		 14 N/A URS000080DE5A N/A Tetrahymena
    thermophila
    5911    		 10388561 Assembly1
    NCO:A:15 2~4,11~12
    65 1c2w:B
    (7.5Å)
    		 2904 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E326 RF02540
    RF02541    		 Escherichia
    coli
    562    		 10756104
    66 1c2x:C
    (7.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 10756104
    67 1c9s:W
    (1.9Å)
    		 55 N/A URS000080E375 N/A synthetic
    construct
    32630    		 10499579 Assembly2
    protein:L:5~74 101~106
    protein:M:5~75 106~111
    protein:N:5~74 111~116
    protein:O:5~75 116~117,119~121
    protein:P:5~74 121~122,124~126
    protein:Q:5~74 126~127,129~131
    protein:R:5~74 131~136
    protein:S:5~74 136~141
    protein:T:5~74 141~146
    protein:U:5~74 146~147,149~151
    protein:V:5~74 101,151~155
    68 1cq5:A

    		 43 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0C0 RF00169 Escherichia
    coli
    562    		 10580470
    69 1cql:A

    		 43 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0C0 RF00169 Escherichia
    coli
    562    		 10580470
    70 1csl:A
    (1.6Å)
    		 13 N/A URS000080DDF9 N/A synthetic
    construct
    32630    		 10656783 Assembly1
    rna:B:64~78 43~54
    71 1csl:B
    (1.6Å)
    		 15 N/A URS000080E02D N/A synthetic
    construct
    32630    		 10656783 Assembly1
    rna:A:43~55 64~67,69~71,73~78
    72 1cx5:B

    		 12 N/A URS000080DF5F N/A synthetic
    construct
    32630    		 10504227 Assembly1
    dna:A:1~12 101~112
    73 1d0t:A

    		 21 N/A URS000080E365 N/A synthetic
    construct
    32630    		 10801314
    74 1d0u:A

    		 21 N/A URS000080E365 N/A synthetic
    construct
    32630    		 10801314
    75 1d4r:A
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly1
    rna:B:1~29 1~14,16~28
    76 1d4r:B
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly1
    rna:A:1~29 1~13,16~28
    77 1d4r:C
    (2.0Å)
    		 29 N/A URS000080DDD1 N/A Homo
    sapiens
    9606    		 10574798
    s72    		 Assembly2
    rna:C-2:1~29 2~28
    78 1d6k:B

    		 37 N/A URS000080E091 N/A synthetic
    construct
    32630    		 10562563 Assembly1
    protein:A:1~94 273~277,279,295~298,303~304,30
    6
    79 1ddy:A
    (3.0Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10625428 Assembly1
    B12:A:101 14,16,29~31
    80 1ddy:C
    (3.0Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10625428 Assembly2
    B12:C:301 214,216,229~231
    81 1ddy:E
    (3.0Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10625428 Assembly3
    B12:E:501 414,416,429~430
    82 1ddy:G
    (3.0Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10625428 Assembly4
    B12:G:701 614,616,629~630
    83 1dfu:M
    (1.8Å)
    		 19 N/A URS000080E19E N/A synthetic
    construct
    32630    		 10696113 Assembly1
    rna:N:68~86 91~107
    protein:P:1~94 92,94~95,98,103~104
    84 1dfu:N
    (1.8Å)
    		 19 N/A URS000080DF0F N/A synthetic
    construct
    32630    		 10696113 Assembly1
    rna:M:91~109 70~86
    protein:P:1~94 73~80
    85 1di2:C
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    rna:D:11~20 1~10
    protein:A:112~180 5~7
    protein:B:112~180 8~10
    86 1di2:D
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    rna:C:1~10 11~20
    protein:A:112~180 16~19
    protein:B:112~180 13~16
    87 1di2:E
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly2
    rna:E-2:21~30 21~30
    88 1di2:G
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly3
    rna:G-3:41~50 41~48,50
    89 1dk1:B
    (2.8Å)
    		 57 N/A URS000080E305 N/A Thermus
    thermophilus
    274    		 10742169 Assembly1
    protein:A:101~186 20~23,30~33,37~41,49~54
    NA:B:211 4,54~55
    90 1dqf:B
    (2.2Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    91 1dqh:B
    (1.7Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    92 1drr:B

    		 10 N/A URS000080DFE7 N/A synthetic
    construct
    32630    		 9425027 Assembly1
    dna:A:1~10 1~10
    93 1drz:B
    (2.3Å)
    		 72 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E321 RF00094 Hepatitis
    delta
    virus
    12475    		 9783582 Assembly1
    protein:A:4~98 144,148~154,157~158
    MG:B:402 169~170
    94 1duh:A
    (2.7Å)
    		 45 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0AE RF00169 synthetic
    construct
    32630    		 10801497 Assembly1
    rna:A-2:31~75 31~38,43~75
    MG:A:2 59~60
    SO4:A:4 48~49
    95 1dul:B
    (1.8Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DD2B RF00169 synthetic
    construct
    32630    		 10678824 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    K:B:701 146~147,163~165
    K:B:702 135~137
    K:B:703 149~150,161~163
    96 1duq:A
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:B:117 101~112
    97 1duq:B
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:A:101~112 117~120,122~124,126~130
    NA:B:911 123~124
    98 1duq:C
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:D:217~230 201~212
    NA:C:906 201~202
    NA:C:913 201~202
    99 1duq:D
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:C:201~212 217~220,222~224,226~230
    NA:C:904 223~224,226
    NA:D:901 220~222
    100 1duq:E
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly3
    rna:F:317~330 301~312
    << < 1 2 3 4 5 6 7 8 9 10 11 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.