FURNA

Download all results in tab-seperated text for 11384 RNAs.

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Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	ATtRACT motif	Ligand & binding nucleotides
401	2cv1:D (2.41Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000052BB59	RF00005	Thermus thermophilus 274	N/A		Assembly2 protein:B:1~468 502~506,511~513,524~525,534~53 8,568~570,573~576 MG:D:903 509,545 MG:D:904 508~509
402	2cv2:C (2.69Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000052BB59	RF00005	Thermus thermophilus 274	17161369		Assembly1 protein:A:1~468 503~506,511~514,524~525,534~53 9,569~571,573~576
403	2cv2:D (2.69Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000052BB59	RF00005	Thermus thermophilus 274	17161369		Assembly2 protein:B:1~468 503~506,511~515,524~525,534~53 9,568~571,574~576
404	2czj:B (3.01Å)	62	GO:0006401 (P) RNA catabolic process	URS000080DD57	RF00023	Thermus thermophilus HB8 300852	17488812		Assembly1 protein:A:2~123 7~8,14~20,47~49,67~68
405	2czj:D (3.01Å)	62	GO:0006401 (P) RNA catabolic process	URS000080DD57	RF00023	Thermus thermophilus HB8 300852	17488812		Assembly2 protein:C:2~123 7~8,15~20,47~49
406	2czj:F (3.01Å)	62	GO:0006401 (P) RNA catabolic process	URS000080DD57	RF00023	Thermus thermophilus HB8 300852	17488812		Assembly3 protein:E:2~123 7~8,14~20,47~49,67~68
407	2czj:H (3.01Å)	62	GO:0006401 (P) RNA catabolic process	URS000080DD57	RF00023	Thermus thermophilus HB8 300852	17488812		Assembly4 protein:G:4~123 7,16~20,47~49,67
408	2d1a:A	39	GO:0019074 (P) viral RNA genome packaging	URS000080DE22	RF00175	Human immunodeficiency virus 1 11676	16272570		Assembly1 rna:B:1~39 1~39
409	2d1a:B	39	GO:0019074 (P) viral RNA genome packaging	URS000080DE22	RF00175	Human immunodeficiency virus 1 11676	16272570		Assembly1 rna:A:1~39 1~39
410	2d1b:A	39	GO:0019074 (P) viral RNA genome packaging	URS000080DE22	RF00175	Human immunodeficiency virus 1 11676	16272570		Assembly1 rna:B:1~39 15~23
411	2d1b:B	39	GO:0019074 (P) viral RNA genome packaging	URS000080DE22	RF00175	Human immunodeficiency virus 1 11676	16272570		Assembly1 rna:A:1~39 15~23
412	2d3o:0 (3.35Å)	2802	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEF1	RF02540 RF02541	Deinococcus radiodurans 1299	16271892		Assembly1 protein:R:2~94 57,63~64,136,1325,1348~1350,13 52,1354,1404~1405,1412,1613~16 18 protein:S:4~113 34,83~86,100,308~310,321,337~3 39,347~349,490,492~494 protein:W:1~66 59~60,71,73,75,93~95 protein:1:10~109 1330,1405
413	2d6f:E (3.15Å)	72	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E128	RF00005	Methanothermobacter thermautotrophicus 145262	16809540		Assembly1 protein:C:1~503 901,904,952~953,961~963
414	2d6f:F (3.15Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E128	RF00005	Methanothermobacter thermautotrophicus 145262	16809540		Assembly1 protein:D:1~538 901,904,953~954,961~963,973~97 4
415	2der:C (3.1Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000037E2FF	RF00005	Escherichia coli 562	16871210		Assembly1 protein:A:5~368 11~12,24~27,33~39
416	2der:D (3.1Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000037E2FF	RF00005	Escherichia coli 562	16871210		Assembly2 protein:B:4 11~12,23~27,33~39
417	2det:C (3.4Å)	70	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000037E2FF	RF00005	Escherichia coli 562	16871210		Assembly1 protein:A:4 11~12,24~27,33~39
418	2deu:C (3.4Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000037E2FF	RF00005	Escherichia coli 562	16871210		Assembly1 protein:A:5~368 11~12,24~27,33~39
419	2deu:D (3.4Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000037E2FF	RF00005	Escherichia coli 562	16871210		Assembly2 protein:B:5~368 11~12,24~27,33~39
420	2dlc:Y (2.4Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E110	RF00005	Saccharomyces cerevisiae 4932	17576676		Assembly1 protein:X:8~356 534~536,569 protein:X-2:8~356 501,570~575
421	2dr2:B (3.0Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00002CF5C7	RF00005	Bos taurus 9913	16798914		Assembly1 protein:A:97~469 33~37,70 protein:A-2:97~469 1,68,70,73~76
422	2du3:D (2.6Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E059	RF00005	Archaeoglobus fulgidus 2234	17351629		Assembly1 protein:A:1~534 933~937
423	2du4:C (2.8Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E059	RF00005	Archaeoglobus fulgidus 2234	17351629		Assembly1 protein:A:1~534 933~937
424	2du5:D (3.2Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E26B	RF00005	Archaeoglobus fulgidus 2234	17351629		Assembly1 protein:A:1~534 933~937
425	2du6:D (3.3Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E16C	RF00005	Archaeoglobus fulgidus 2234	17351629		Assembly1 protein:A:1~534 934~936
426	2dxi:C (2.2Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000052BB59	RF00005	Thermus thermophilus 274	17161369		Assembly1 protein:A:1~468 503,505,511~514,524~525,534~53 9,569~571,574~576
427	2dxi:D (2.2Å)	75	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000052BB59	RF00005	Thermus thermophilus 274	17161369		Assembly2 protein:B:1~468 503~506,511~513,524~525,534~53 8,569~570,574~576
428	2e5l:A (3.3Å)	1517	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E378	RF00177 RF01959 RF01960	Thermus thermophilus 274	17355865		Assembly1 rna:1:1~6 1538~1543 rna:2:7~10 723,1533,1537~1538 protein:B:7~228 829,1073~1075,1099~1104,1111 protein:C:2~207 421,532,1055~1058,1060~1061,11 07~1109,1111~1113,1189~1191,12 05~1206,1256 protein:D:2~209 8,400~413,426~430,436~438,489~ 490,499,508~509,511~512,541~54 7,616,619~620 protein:E:5~154 5~9,15~16,18~20,559,864,921~92 2,1069~1070,1072~1074,1078~108 1,1396~1398 protein:F:1~101 670~671,673~674,710~711,736~73 8 protein:G:2~156 932~933,935,939~940,1092,1173, 1239~1241,1290~1292,1297~1298, 1346,1350~1351,1373~1380 protein:H:1~138 4,564,586~587,590~591,597~600, 632,640~643,653,755,823~828,86 0~861,874~878 protein:I:2~128 966~968,1117~1119,1127~1131,11 47~1149,1178~1180,1186~1188,12 31~1233,1248~1252,1291~1292,13 42~1344,1346~1351,1366~1373 protein:J:3~100 963~964,972~973,975,1059~1061, 1123~1125,1150~1153,1189,1198~ 1199,1254~1255,1278~1280,1366~ 1368 protein:K:11~125 675~677,683~692,694~695,704,70 6~708,716,718,778~780,1523 protein:L:5~128 24,33~37,49,241,362~363,501~50 3,518~523,526,528~529,537~539, 552~553,556,562,564,567~568,58 5,880~881,909~913,1491 protein:M:2~123 946~953,1225~1229,1295,1297,13 02,1306~1310,1321,1328~1330 protein:N:2~61 973~976,979~983,1047~1049,1060 ,1114~1115,1186~1189,1202~1203 ,1216~1219,1316~1317,1358~1359 ,1368~1369 protein:O:2~89 579,583,656~660,667~669,728,73 9~741,750~755,764,807~808 protein:P:1~83 43~44,110,112,134~137,228~230, 309~311,375~377,389~393,449~45 0,452,454,462~463,474,608,617, 624~627 protein:Q:2~105 127~130,190E,234~238,246~247,2 53~256,264~267,275~280,564,584 ,586,760,762 protein:R:16~88 663~664,674,718~720,734~736,83 5 protein:S:2~81 957~958,986,1014,1219~1227,131 0~1314,1318~1321 protein:T:8~106 56,61,103~105,107~108,132,175~ 177,185~188,190L,191~195,222~2 23,259~263,323~324,333,1436,14 38~1439,1455,1459~1460 protein:V:2~25 1235~1236,1242~1244,1267,1269, 1286,1304~1305,1325~1329,1352
429	2ees:A (1.75Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080DE3D	RF00167	Bacillus subtilis 1423	17960911		Assembly1 ACT:A:96 32~33,38~39,66 NCO:A:101 66~67 NCO:A:102 38,56 NCO:A:103 39,55~56,68~69 NCO:A:104 30~32,66 NCO:A:105 37~38,57 NCO:A:107 41,53~54 NCO:A:108 47,50 NCO:A:109 24,71 NCO:A:111 32~33 HPA:A:90 21~22,47,51~52,74~75
430	2eet:A (1.95Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080DDBB	RF00167	Bacillus subtilis 1423	17960911		Assembly1 ACT:A:96 32~33,38~39 NCO:A:101 66~67 NCO:A:102 38~39,56 NCO:A:103 39,56,69 NCO:A:104 30~32,66 NCO:A:105 37~38 NCO:A:107 41,53~54 NCO:A:108 47,50~51 NCO:A:111 32~33 HPA:A:90 21~22,47,51~52,74~75
431	2eeu:A (1.95Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080E2FB	RF00167	Bacillus subtilis 1423	17960911		Assembly1 ACT:A:96 32~33,38~39 NCO:A:101 28,66~67 NCO:A:102 38~39,56 NCO:A:103 39,56,69 NCO:A:104 31~32,66 NCO:A:105 37~38 NCO:A:107 41,53~54 NCO:A:108 46~47 NCO:A:109 24,71 NCO:A:111 32~33 NCO:A:112 72~73 HPA:A:90 21~22,47,51~52,74~75
432	2eev:A (1.95Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080DFC6	RF00167	Bacillus subtilis 1423	17960911		Assembly1 ACT:A:95 32~33,38 NCO:A:101 28,66~67 NCO:A:102 38~39,56 NCO:A:103 39,56,69 NCO:A:104 30~32,66 NCO:A:105 37~38 NCO:A:106 26~27 NCO:A:107 41,53~54 NCO:A:108 46~47 NCO:A:109 24,71 NCO:A:110 21~22 NCO:A:111 32~33 NCO:A:112 72~73 HPA:A:90 21~22,47,51~52,74~75
433	2eew:A (2.25Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080E008	RF00167	Bacillus subtilis 1423	17960911		Assembly1 ACT:A:96 32~33,38,66 NCO:A:101 66~67 NCO:A:102 38~39,56 NCO:A:103 39,56,69 NCO:A:104 31~32,66 NCO:A:105 37~38 NCO:A:111 32~33 NCO:A:112 72~73 HPA:A:90 21~22,47,51~52,74~75
434	2f4v:A (3.8Å)	1507	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E34A	RF00177 RF01959 RF01960	Thermus thermophilus 274	16492561		Assembly1 rna:Z:3~6 926,1400~1401,1498,1506 protein:B:7~243 828,1073~1075,1101~1104,1159 protein:C:2~207 421,1055~1061,1107~1109,1111~1 113,1190~1191,1205~1206 protein:D:2~209 8,401~413,426~430,436~438,509, 511~512,541~547,613,619~620 protein:E:5~154 6~10,15~16,18~19,559~560,921~9 22,1069~1070,1074,1077~1081,11 94,1397 protein:F:1~101 673~674,737~738 protein:G:2~156 932~933,935,938~940,1239~1241, 1291~1292,1297~1298,1346,1351, 1373~1380 protein:H:1~138 586~587,590~591,598~600,640~64 4,653,753,824~826,875~878 protein:I:2~128 943,967,1117~1119,1127~1130,11 47~1149,1177~1180,1186~1188,12 31~1232,1248~1251,1291,1342~13 50,1367~1369,1371~1373 protein:J:3~100 963~964,969,972~973,975,1060~1 061,1123~1125,1150~1153,1189,1 255,1279~1280,1366,1368 protein:K:11~129 675~676,684~686,688~692,694~69 5,704,706~708,716,718,779~780, 796~797,1523~1525 protein:L:5~129 33~37,49,302~303,362~363,500~5 03,520~523,525~526,528~529,537 ~539,552~553,562~564,567~568,5 85,880~881,910~912,1492 protein:M:2~126 947~954,969~970,1225~1230,1295 ,1297,1302,1307~1310,1320~1321 ,1328~1330 protein:N:2~61 973~976,980~981,983,1016,1047~ 1048,1060,1114~1115,1188~1189, 1202~1203,1216~1219,1316~1317, 1358~1359,1369 protein:O:2~89 579~581,656~659,667~669,728~73 0,739~742,750~755,764 protein:P:1~83 44,110,134~136,228~230,310~311 ,375~377,390~393,449~450,452,4 63,474,608,623~626 protein:Q:2~105 127~130,190E,234~238,247,253~2 56,264~265,267,273,275~280,564 ,582~584,586,760~761 protein:R:16~88 663~664,673~674,718~720,734~73 6,835~836 protein:S:2~85 955,957~958,986~987,1014,1220~ 1224,1226~1227,1310~1315,1318~ 1322 protein:T:8~106 103~108,133,175~177,185~188,19 0L,191~195,223,259~261,322~325 ,332~333,1439,1454~1455,1459 MG:A:1535 944~945 MG:A:1537 11~12,21~22 MG:A:1545 509~510 MG:A:1549 595~598 MG:A:1552 885~886 MG:A:1554 934,1345 MG:A:1558 964,1199 MG:A:1561 299,558 MG:A:1563 572~574 MG:A:1565 1110,1189 MG:A:1566 1067~1068,1094 MG:A:1567 1095,1108 MG:A:1571 1499~1500,1505 MG:A:1572 1500,1504~1505,1508 MG:A:1576 116~117,288~289 MG:A:1579 782,794 MG:A:1581 1303~1304 MG:A:1583 410,431 MG:A:1586 518,529 MG:A:1587 121,124~126,235~236 MG:A:1588 109,331 MG:A:1594 1054,1198 MG:A:1603 1238,1335 MG:A:1607 328~329 MG:A:1609 516,532~533 MG:A:1611 924~925 MG:A:1614 1415~1417 MG:A:1615 416~417,426~428 MG:A:1617 785~786 MG:A:1626 528~529,533 MG:A:468 9~10 MG:A:1627 943~944 MG:A:1628 332~333 MG:A:1629 317~318 MG:A:1630 450~452 MG:A:1632 1048,1214~1215 MG:A:1634 46,394 K:A:1539 765~766,811~813 K:A:1540 767~769 K:A:1548 21,567,573 K:A:1550 858,868~869 K:A:1553 936~939 K:A:1559 980,1360 K:A:1560 1054,1197~1198 K:A:1578 798~800 K:A:1602 181~183 K:A:1605 581,758 K:A:1612 919,1394 K:A:469 58~59,387 D2C:A:1636 966,1054,1197~1198 AB9:A:1637 1404~1405,1491,1493~1496,1498
435	2f88:A	34	GO:0000373 (P) Group II intron splicing	URS000080E292	RF00029	synthetic construct 32630	16428604
436	2fdt:A	36	GO:0032197 (P) retrotransposition	URS000080DE48	RF00436	synthetic construct 32630	17000640
437	2fk6:R (2.9Å)	53	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080DE34	RF00005	Bacillus subtilis 1423	16518398		Assembly1 protein:A:1~307 3~4,19,56,61~62,73 protein:A-2:1~307 1,72~73
438	2fmt:C (2.8Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00001BBAFC	RF00005	synthetic construct 32630	9843487		Assembly1 protein:A:1~314 2,11~13,24~25,69~76
439	2fmt:D (2.8Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00001BBAFC	RF00005	synthetic construct 32630	9843487		Assembly2 protein:B:1~314 2,11~14,24~25,69~76
440	2ftc:R (12.1Å)	1443	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E087	RF02541 RF02540	Bos taurus 9913	16510155		Assembly1 protein:C:96~306 802,1341~1342 protein:G:13~157 515~516
441	2g9c:A (1.7Å)	67	GO:0009113 (P) purine nucleobase biosy...	URS000080DFC3	RF00167	Bacillus subtilis 1423	17076468		Assembly1 ACT:A:96 32~33,38~39 NCO:A:101 66~67 NCO:A:102 38~39,56 NCO:A:103 39,56,69 NCO:A:104 30~32,66 NCO:A:105 37~38 NCO:A:106 26~27 NCO:A:107 41,53~54 NCO:A:108 47,50~51 NCO:A:109 24,71 NCO:A:111 32~33 3AY:A:91 21~22,51~52,74~75
442	2gcs:B (2.1Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:0~20 23~37,39~40,58,60~65,67,115~11 7 MG:B:501 36~37 MG:B:503 79,81 MG:B:504 57,59
443	2gcv:B (2.1Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:1~20 23~37,58,60~65,115~117 MES:A:501 65~66 MES:B:502 40,65,67 MG:B:401 36~37 MG:B:403 79,81 MG:B:404 57,59
444	2gdi:X (2.05Å)	80	GO:0030976 (F) thiamine pyrophosphate ...	URS000080DDEB	RF00059	Escherichia coli 562	16728979		Assembly1 NA:X:122 64~66 K:X:123 21~22,72 K:X:124 21~22,43,71~73 K:X:125 38~39,70~71,73 MG:X:101 60,78 TPP:X:100 19,40,42~43,58,72,77~78
445	2gdi:Y (2.05Å)	80	GO:0030976 (F) thiamine pyrophosphate ...	URS000080DDEB	RF00059	Escherichia coli 562	16728979		Assembly2 MG:Y:111 60,78 TPP:Y:100 19,40,42~43,58,72~73,77~78
446	2gis:A (2.9Å)	94	GO:0010468 (P) regulation of gene expr...	URS000080DF35	RF00162	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16810258		Assembly1 MG:A:205 10,63~64 MG:A:206 84~85 IRI:A:202 16~18 IRI:A:203 23,25~28 IRI:A:204 4~5,88 SAM:A:301 7,11,45~47,57~59,88~89
447	2gm0:A	35	GO:0019074 (P) viral RNA genome packaging	URS000080DE12	RF00175	Human immunodeficiency virus 1 11676	16603544		Assembly1 rna:B:36~70 1~35
448	2gm0:B	35	GO:0019074 (P) viral RNA genome packaging	URS000080DE12	RF00175	Human immunodeficiency virus 1 11676	16603544		Assembly1 rna:A:1~35 36~70
449	2go5:9 (7.4Å)	90	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E04F	RF02540	Triticum sp. 4569	16675701		Assembly1 protein:6:17~97 2854~2857,2895,2904~2906
450	2go5:A (7.4Å)	127	GO:0006617 (P) SRP-dependent cotransla... GO:0005786 (C) signal recognition part...	URS000080DFD3	RF00017 RF01856	Canis sp. 9616	16675701		Assembly1 protein:B:14~120 141~143,147~151,195~198,203~20 4 protein:W:326~434 184~185,192~195,207~208 protein:1:-1~130 231~235
451	2h0s:B (2.35Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:-2~20 23~37,39~40,58,60~67,115~117 MG:B:301 36~37 MG:B:302 79,81 MG:B:303 57,59
452	2h0w:B (2.4Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:1~20 23~37,58,60~65,115~117 MG:B:501 36~37 MG:B:503 79,81 MG:B:504 57,59 MES:B:601 65~66 MES:B:602 40,65,67
453	2h0x:B (2.3Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:0~20 23~37,39~40,58,60~65,67,115~11 7 MG:B:501 36~37 MG:B:503 79,81 MG:B:504 57,59
454	2h0z:B (2.7Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:0~20 23~35,37,39~40,58,60~67,115~11 7 G6P:A:301 51,66 MG:A:401 35~36 MG:B:402 57,59 MG:B:403 79,81
455	2hhh:A (3.35Å)	1505	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E226	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	16998488		Assembly1 protein:B:7~240 812~814,1056~1059,1084,1086~10 87 protein:C:2~207 417,516,1038~1041,1043,1090~10 92,1094~1096,1171~1174,1187~11 88,1238 protein:D:2~209 9,27,397~408,421~426,433~434,4 74~475,492~493,495~496,525~531 ,600,603~604 protein:E:5~154 7~10,16~17,19~21,543,899~901,1 052~1053,1055~1057,1060~1065,1 176,1380~1381 protein:F:1~101 657~658,694~695,720~723 protein:G:2~156 910~911,913,917~918,1075,1221~ 1223,1272~1274,1279~1280,1328, 1332~1333,1356~1363 protein:H:1~138 570~571,574,581~584,624~627,63 7,737,808~810,812,839,853~856 protein:I:2~128 944~946,1100~1102,1110~1114,11 30~1132,1160~1162,1169,1213~12 15,1230~1233,1273~1274,1324~13 25,1327~1333,1349~1356 protein:J:3~100 941~942,950~951,953,1042~1044, 1106~1108,1133~1136,1171,1181, 1236~1237,1261~1262,1349~1351 protein:K:11~129 659~661,667~670,672~676,678~67 9,688~692,700~702,761~764,781, 1501~1503 protein:L:5~128 34~38,50,237,358~360,484~487,5 02~507,510~513,521~523,535~537 ,540,546~548,551~552,858~859,8 88~891 protein:M:2~126 925~931,943,947~948,1207~1213, 1277,1279,1284,1288~1292,1303~ 1304,1310~1312 protein:N:2~61 951~954,957~961,972~973,994~99 5,1030~1032,1043,1097~1098,116 8~1171,1184~1185,1198~1199,120 1,1298~1299,1339~1341,1351~135 2 protein:O:2~89 563~566,640~644,651~653,712,72 3~726,734,736,738~739,748,792 protein:P:1~83 44~45,104,106,129~132,223~226, 306~307,371~373,386~389,445,44 7,457~459,591,601,608~610 protein:Q:2~105 121~123,125,190,230~233,243,24 9~252,260~263,271~276,548,566, 569,744~745 protein:R:16~88 647~648,658,702~705,718~720,81 9~820 protein:S:2~81 935~936,964~965,993,1201~1205, 1207,1209,1292~1297,1300~1304 protein:T:8~106 96~98,100~102,127~128,171~173, 180~183,197~202,219,255~257,25 9,318~321,328~329,1422,1435~14 38 protein:U:2~25 1217~1218,1224~1226,1249,1251, 1268,1286~1287,1307~1310,1334~ 1335 KSG:A:1523 776,778,904,1476~1477,1483~148 4 KSG:A:1524 677,772~773
456	2ho6:B (2.8Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:1~20 23~37,58,60~65,115~117 MG:B:201 36~37 MG:B:202 79,81 MG:B:203 57,59 MES:B:402 40,65,67
457	2ho7:B (2.9Å)	123	GO:0003824 (F) catalytic activity GO:0010468 (P) regulation of gene expr...	URS000080DF18	RF00234	Caldanaerobacter subterraneus subsp. tengcongensis 119072	16990543		Assembly1 rna:A:0~20 23~37,39~40,58,60~67,115~117 G6P:A:401 50,65 MG:B:201 36~37 MG:B:202 57,59 MG:B:204 79,81~82
458	2hoj:A (2.5Å)	79	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 MN:A:116 60,78 MN:A:117 63~64 MG:A:127 37~38 MG:A:128 21,71,73 TPP:A:114 19,40,42~43,57~58,72,78
459	2hok:A (3.2Å)	78	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 CA:A:95 60,78 CA:A:96 63~64 CA:A:98 40,43 TPP:A:93 19,40,42~43,57~58,72,77~78
460	2hol:A (2.9Å)	79	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 BA:A:107 60,78 BA:A:108 63~64 BA:A:114 40,43 MG:A:119 21,71,73 TPP:A:105 19,40,42~43,58,72,77~78
461	2hom:A (2.89Å)	80	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 MG:A:98 60,78 MG:A:103 62~63 CA:A:100 63~64 TPS:A:97 19~20,40,42~43,72,77~78
462	2hoo:A (3.0Å)	83	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 CA:A:96 59~60,78 CA:A:97 72,76~77 CA:A:98 80~81 CA:A:100 20~21,44 CA:A:101 35~36 BFT:A:95 19~20,40,42~43,58,72,78
463	2hop:A (3.3Å)	76	GO:0030976 (F) thiamine pyrophosphate ...	URS000080E068	RF00059	Escherichia coli 562	16962976		Assembly1 218:A:92 19,42~43,73
464	2il9:A (3.1Å)	135	GO:0043022 (F) ribosome binding	URS000080DDA6	RF00458	Plautia stali intestine virus 64698	17124290		Assembly1 rna:M:6003~6146 6030~6035,6040~6043,6045,6049~ 6052,6103,6105~6109,6133~6139, 6141~6146
465	2il9:M (3.1Å)	132	GO:0043022 (F) ribosome binding	URS000080DDA6	RF00458	Plautia stali intestine virus 64698	17124290		Assembly1 rna:A:6003~6146 6030~6032,6034~6035,6039~6044, 6049~6052,6103,6105,6107~6109, 6133~6140,6142~6146
466	2iy3:B (16.0Å)	110	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080DE7C	RF00169	Escherichia coli 562	17086205
467	2iy5:T (3.1Å)	76	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E078	RF00005	Thermus thermophilus HB8 300852	16939209		Assembly1 protein:A:15~350 19,28,42~45,56~57 protein:B:1~780 1,11~12,24~26,33~37 protein:A-2:15~350 69,76 protein:B-2:1~780 10~11,67,73~75
468	2j28:8 (9.5Å)	74	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E293	RF00169	Escherichia coli 562	17086193		Assembly1 protein:9:2~431 39,47~49,62~63
469	2j28:A (9.5Å)	117	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DF7E	RF00001	Escherichia coli 562	17086193		Assembly1 rna:B:1~2903 41,78~81,89~90,96~97,99~101 protein:F:1~178 41~43,45,54~57 protein:O:1~117 7~9,28,30,38,46~51,112~116 protein:V:1~94 74~78,94~95,98,103 protein:Y:1~58 82~83
470	2j28:B (9.5Å)	2841	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	17086193		Assembly1 protein:0:1~56 15~17,516~517,1262~1264,1266,2 015~2017,2020~2022,2045~2046,2 054,2056,2614~2615,2815~2816,2 884~2887 protein:1:1~54 2285~2286,2344,2346,2370~2371, 2399~2400,2418~2419 protein:2:1~46 66,118,125~126,179~180,458~459 ,464~467,682~684,686~688,752~7 53,770~771,789,1309~1310,1368, 1612,1619~1620 protein:3:1~64 242,247,249~250,253,592~593,62 9,631,649,651,834,2348~2351,23 59,2361~2363,2382~2383,2391~23 94,2419~2422 protein:4:1~38 1031~1033,2465~2468,2477,2525~ 2529,2538~2539,2741~2743,2750, 2755~2756 protein:9:2~431 484~488,490,1284,1317,1535 protein:C:3~269 690~692,728~730,764,773~774,77 9~782,784,1354,1490~1491,1500~ 1501,1566~1569,1694~1695,1774, 1788~1792,1796~1805,1812~1814, 1816~1821,1824~1826,1828,1842~ 1845,1902~1903,1971,2073,2085~ 2086,2204,2227~2228,2239,2591, 2593,2595,2597~2600 protein:D:1~209 574,743~744,1654~1658,1675,199 4,1997,2024~2025,2032,2051~205 3,2511~2514,2571~2572,2574,257 8~2581,2618~2621,2632~2633,263 5~2637,2677~2682,2724,2729~273 1,2772~2774,2783~2784,2786~278 7,2810~2811,2820~2823 protein:E:1~201 37~38,320~321,323~324,333,442~ 444,448~449,451~452,583,586~59 0,599~600,607,613,615~617,620, 658~660,671~675,798,801,1205,1 244~1245,1248,1254~1257,2059~2 060,2443~2445 protein:F:1~178 2302~2306,2310~2316 protein:G:1~176 1049,1092~1093,1112~1114,2529~ 2531,2653,2667,2745,2747~2749, 2751,2757~2758 protein:H:1~149 2092~2095,2198 protein:I:1~141 1059~1061,1063~1064,1080~1081, 1088,1098~1100 protein:J:1~140 6~8,529,536,549,557~558,995,10 05~1007,1012,1022,1131~1133,11 38~1141,1143,2039,2515,2639~26 42,2780,2898~2899 protein:K:2~122 1665~1667,1669,1952,1995~1996, 2547~2548,2561~2563,2566,2674~ 2676,2683~2685,2727~2728 protein:L:1~144 244~245,250~251,587~588,597~59 8,623,625~627,630~637,661~663, 665~667,805,810~811,813,833,94 3,1189~1190,1202~1203,1243~124 4,2360,2392~2395,2404~2405,241 4~2416 protein:M:1~136 863,870~873,905~907,909~910,95 4~958,1030,1116~1117,2250,2275 ~2278,2466~2469,2483~2485,2493 ~2496 protein:N:1~127 1275~1279,1287,1294~1295,1453~ 1454,1649~1655,2002,2009,2689~ 2690,2700~2701,2706,2722~2723, 2820~2823,2838~2840,2850~2851, 2873~2874,2880~2882 protein:O:1~117 2293~2294,2334,2376~2380 protein:P:1~114 1754,2682~2685,2717~2719,2845~ 2849,2867,2876~2877 protein:Q:1~117 17~19,28,445~446,513,515~516,5 32~536,561,563~564,578,580~585 ,812,992~998,1009~1012,1151~11 54,1156,1198~1199,1216~1217,12 19,1227,1248~1252,2018~2021 protein:R:1~103 548,565,814,975,992~993,996,11 61~1163,1187~1188,1223~1226 protein:S:1~110 24~26,485~488,491~496,517,519~ 520,747~748,751,1262,1266,1323 ,1325,1614~1615,2010~2014 protein:T:1~99 64~65,135~136,139,143~144,456, 1312,1338~1342,1392,1599,1601 protein:U:1~102 83~86,99~101,297~298,308,310,3 29,336~337,480~481,483 protein:V:1~94 1039,1118 protein:W:1~84 855~857,922~923,2256~2257,2261 ~2263,2270~2271,2276~2281,2330 ~2331,2334,2352,2354~2356,2365 ~2366,2386~2387 protein:X:1~63 61,72,76~78,95~96 protein:Y:1~58 850~851,927~930,968~969,988,99 9,1155,1157,1184 protein:Z:1~70 188~189,199~201,372,380,395~39 8,1364~1365,1808,2079~2081,209 0~2092,2199~2200,2217,2230~223 1,2433 rna:A:2~118 861~864,916~919,958,2340 MG:B:3907 945~946 MG:B:3914 1670~1671 MG:B:3915 1268,2006 MG:B:3918 999,1153 MG:B:3920 733,761 MG:B:3923 2061,2502 MG:B:3924 2056~2057 MG:B:3933 2579,2611 MG:B:3934 1269,2005 MG:B:3936 2268~2269 MG:B:3940 1358,1371 MG:B:3941 948,962~963 MG:B:3943 827,2429~2430 MG:B:3947 810,1253 MG:B:3950 784,2588 MG:B:3956 526~527 MG:B:3958 751,1614 MG:B:3959 621~622 MG:B:3964 450,453 MG:B:3970 783~784,2589 MG:B:3974 1394,1604 MG:B:3975 1395,1603~1604 MG:B:3978 1968,2592 MG:B:3980 2248~2249 MG:B:3983 2711,2714 MG:B:3985 2448,2498~2499 MG:B:3986 570,2448,2499 MG:B:3987 1780,1782~1783 MG:B:3988 730~731,761 MG:B:3989 740,1783~1784 MG:B:3990 826,2427~2429 MG:B:3992 2582~2583 MG:B:3993 1023~1026 MG:B:3994 2573~2575 MG:B:3995 1342,1602 MG:B:3997 1669~1671,2550 MG:B:4000 192,2243 MG:B:4002 1265,2615 MG:B:4003 1378~1379 MG:B:4004 787,790 MG:B:4005 195,197~198 MG:B:4006 1314~1315,1332 MG:B:4008 510~512 MG:B:4010 1189~1190 MG:B:4011 1006,1009~1010 MG:B:4012 1271~1272,1647~1648
471	2j37:A (8.7Å)	128	GO:0006617 (P) SRP-dependent cotransla... GO:0005786 (C) signal recognition part...	URS000080DE1E	RF00017 RF01856	Canis sp. 9616	17086193		Assembly1 protein:B:14~120 141~143,147~151,195~198,203~20 4 protein:W:8~488 184~185,192~195,207~208
472	2j37:Z (8.7Å)	280	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E01F	RF02540	Haloarcula marismortui 2238	17086193		Assembly1 protein:4:69~149 109~112,165~166,171~172 protein:6:17~97 44~50,62~65 protein:W:8~488 12~14,86
473	2jq7:B	58	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E044	RF02540 RF02541	Escherichia coli 562	17169991		Assembly1 protein:A:8~141 1058~1065,1070,1076~1082,1096~ 1098 protein:C:0~17 1067,1095
474	2jtp:A	34	GO:0075523 (P) viral translational fra...	URS000080E15C	RF01835	synthetic construct 32630	17868691
475	2k4c:A	76	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000009F4BF	RF00005	Escherichia coli 562	18787959
476	2ke6:A	48	GO:0008298 (P) intracellular mRNA loca... GO:0051028 (P) mRNA transport	URS000080DEE0	RF00207	Drosophila melanogaster 7227	20473315
477	2krl:A	102	GO:1902679 (P) negative regulation of ...	URS000080E1F0	RF00500	Turnip crinkle virus 11988	20080629
478	2kur:A	48	GO:0008298 (P) intracellular mRNA loca... GO:0051028 (P) mRNA transport	URS000080E344	RF00207	Drosophila melanogaster 7227	20473315
479	2kuu:A	48	GO:0008298 (P) intracellular mRNA loca... GO:0051028 (P) mRNA transport	URS000080E155	RF00207	Drosophila melanogaster 7227	20473315
480	2kuv:A	48	GO:0008298 (P) intracellular mRNA loca... GO:0051028 (P) mRNA transport	URS000080DE75	RF00207	Drosophila melanogaster 7227	20473315
481	2kuw:A	48	GO:0008298 (P) intracellular mRNA loca... GO:0051028 (P) mRNA transport	URS000080E2A2	RF00207	Drosophila melanogaster 7227	20473315
482	2l1f:A	65	GO:0019072 (P) viral genome packaging	URS000080DD56	RF00374	Moloney murine leukemia virus 11801	20933521		Assembly1 rna:B:709~774 310,328,330~334,352~353,362,36 4~369
483	2l1f:B	66	GO:0019072 (P) viral genome packaging	URS000080DE60	RF00374	Moloney murine leukemia virus 11801	20933521		Assembly1 rna:A:309~373 710,728,730~734,752~753,762,76 4~769
484	2l3j:B	71	GO:0035195 (P) miRNA-mediated post-tra... GO:0016442 (C) RISC complex	URS000080DF7D	RF02095	Rattus norvegicus 10116	20946981		Assembly1 protein:A:1~236 245~248,255,258,260~261,268~26 9,277~279,287~288,290~293,299~ 300
485	2l94:A	45	GO:0075523 (P) viral translational fra...	URS000080E22A	RF00480	Human immunodeficiency virus 1 11676	21648432		Assembly1 L94:A:46 9~11,26~27,33~34
486	2lc8:A	56	GO:0039705 (P) viral translational rea...	URS0000A7636D	RF01073	Moloney murine leukemia virus 11801	22121021
487	2lkr:A	111	GO:0030621 (F) U4 snRNA binding GO:0045131 (F) pre-mRNA branch point b... GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0000348 (P) mRNA branch site recogn... GO:0005688 (C) U6 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... GO:0005686 (C) U2 snRNP	URS000080E147	RF00026 RF00004	Saccharomyces cerevisiae 4932	22328579	383
488	2lps:A	34	GO:0000373 (P) Group II intron splicing	URS000080DF0B	RF00029	Saccharomyces cerevisiae 4932	22714631 14745440
489	2lpt:A	34	GO:0000373 (P) Group II intron splicing	URS000080E292	RF00029	synthetic construct 32630	22714631 16428604
490	2mf0:G	72	GO:0006109 (P) regulation of carbohydr... GO:0006401 (P) RNA catabolic process	URS000080DEDE	RF00166	Pseudomonas fluorescens 294	24828038		Assembly1 protein:A:1~59 23,25,27~31,45,48~50,53 protein:B:1~59 21~23,26~28,30~32,45~53 protein:C:1~59 3~4,6,8~12,59~61,63~65,67~69 protein:D:1~59 2~4,6~9,12,60~61,63~68 protein:E:1~59 38~40,42~43 protein:F:1~59 38~42
491	2mf1:G	72	GO:0006109 (P) regulation of carbohydr... GO:0006401 (P) RNA catabolic process	URS000080DEDE	RF00166	Pseudomonas fluorescens 294	24828038		Assembly1 protein:A:1~59 18~20,25,27~31,44~46,48~50,52~ 54 protein:B:1~59 21~23,26~32,46~53 protein:C:1~59 3~4,6,8~12,59~61,63~65,67~69 protein:D:1~59 2~9,12,60~61,63~68 protein:E:1~59 38~40,42~43,57~58,72 protein:F:1~59 38~43,72
492	2miy:A	59	GO:0008616 (P) queuosine biosynthetic ...	URS000080E2D6	RF01054	Streptococcus pneumoniae 1313	24469808		Assembly1 PRF:A:101 7~8,19~20,50~51
493	2ms0:B	71	GO:0030533 (F) triplet codon-amino aci...	URS0000715533	RF00005	Murine leukemia virus 11786	25209668		Assembly1 protein:A:1~55 6~15,49,60,68 protein:C:101~156 12,32,34~38
494	2ms1:B	71	GO:0030533 (F) triplet codon-amino aci...	URS0000715533	RF00005	Murine leukemia virus 11786	25209668		Assembly1 protein:A:1~55 6~9,45
495	2n1q:A	155	GO:0019074 (P) viral RNA genome packaging GO:0043484 (P) regulation of RNA splicing	URS000086851D	RF01381 RF00175 RF01380	Human immunodeficiency virus 1 11676	25999508
496	2n7m:X	92	GO:0017070 (F) U6 snRNA binding GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005687 (C) U4 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co...	URS00008FED30	RF00015	Saccharomyces cerevisiae 4932	26655855
497	2nbx:A	108	GO:0043022 (F) ribosome binding	URS0000A76323	RF00210	synthetic construct 32630	27525590
498	2nc1:A	67	GO:0043022 (F) ribosome binding	URS0000A7633E	N/A	synthetic construct 32630	27525590
499	2noq:A (7.3Å)	190	GO:0043022 (F) ribosome binding	URS000080E076	RF00458	Cricket paralysis virus 12136	17115051		Assembly1 rna:B:500~545 160~162,191~193 rna:C:1050~1062 189~190 rna:D:1194~1208 188~190 protein:F:75~224 86~90 protein:G:4~216 10~15,61
500	2noq:B (7.3Å)	46	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E36E	RF00177	Saccharomyces cerevisiae 4932	17115051		Assembly1 rna:A:4~193 505,518,528~531,533~535

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