SEQ2FUN

FURNA
Download all results in tab-seperated text for 4576 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    4001 8urx:B
    (6.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:7:1~47 35,37
    rna:D:1~1534 30~32,37~38
    rna:a:1~2903 2,13,24,75~76
    protein:X:2~117 44~45
    4002 8ury:A
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 39117885 Assembly1
    protein:M:2~152 32~34,40~41
    rna:a:1~2903 16~17,19,56,71~72,76
    4003 8ury:B
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:7:1~47 35,37
    rna:D:1~1534 30~32,37~38
    rna:a:1~2903 2,13,24,75~76
    protein:X:2~117 44~45
    4004 8ut0:m
    (3.22Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000042DDAB RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:2:1~1799 34~37
    rna:A:3~3396 37~38,63,74~76
    rna:D:1~10 34~37
    protein:Sg:5~61 36~37
    protein:AA:7~108 38~41
    protein:LL:2~219 53~55
    4005 8ut0:n
    (3.22Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 11~12,24~25,74~76
    rna:D:1~10 34~37
    protein:SF:3~143 32~33,35
    protein:LL:2~219 1,63~64,74~76
    protein:LM:6~174 20,56
    protein:Ls:11~153 16,73,75~76
    4006 8uti:m
    (3.13Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000042DDAB RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 37~38,52,63,74~76
    rna:D:1~10 34~37
    rna:E:1~1799 34~37
    protein:Sg:5~61 36~37
    protein:AA:7~108 38~41
    4007 8uti:n
    (3.13Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CB170 RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 12,24,74~76
    rna:D:1~10 34~37
    rna:E:1~1799 30~31,34,38~41
    protein:SF:3~143 32~33,35
    protein:AA:7~108 28,43
    protein:LL:2~219 1,64,74~75
    protein:LM:6~174 20,56
    4008 8uu5:x
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,34,37,40~41
    rna:w:4~17 34~37
    rna:A:3~2930 3,19,56,70~71,75~76
    4009 8uu6:x
    (3.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,34~35,38,40~42
    rna:w:11~16 34~37
    rna:A:2~2930 3,19,56,70~71,75~76
    4010 8uu7:y
    (3.2Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    protein:g:2~152 31,40
    rna:A:2~2930 3,19,55~56,70~71,76
    4011 8uu8:x
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,37~38,40~41
    rna:w:11~19 34~37
    rna:A:2~2930 3,19,56,70~71,75~76
    4012 8uu9:x
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:5~1548 30~32,34,40~41
    rna:w:11~18 34~37
    rna:A:3~2930 3,19,56,70~71,75~76
    4013 8uvr:1w
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    MG:1w:101 32~33,36
    MG:1w:103 51~52,62~63
    MG:1w:107 1~2
    4014 8uvr:1x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:1i:2~128 33~35
    protein:1m:2~124 28~29
    K:1A:3515 75~76
    MG:1x:102 20,59
    4015 8uvr:1y
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,56,71,76
    protein:1g:2~156 30~32,40~42
    MG:1y:101 75~76
    4016 8uvr:2w
    (2.6Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    MG:2w:102 69~70
    MG:2w:107 74~75
    MG:2w:108 51~52,62~63
    MG:2w:109 55,57
    4017 8uvr:2x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:20:2~84 2,64,74
    protein:2i:2~128 32~35
    K:2A:3428 75~76
    MG:2x:101 75~76
    4018 8uvr:2y
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    protein:2g:2~156 31~32,40~41
    protein:2k:13~126 39~40
    MG:2y:102 70~71
    MG:2y:104 12~13
    4019 8uvs:1w
    (2.75Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    protein:1m:2~124 37,39
    MG:1w:102 33,36
    MG:1w:104 51,62~63
    4020 8uvs:1x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38,40~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:1i:2~128 32~35
    protein:1m:2~124 28~29
    MG:1A:3954 75~76
    MG:1x:113 20,59
    K:1x:101 75~76
    4021 8uvs:1y
    (2.75Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,56,71~72,76
    protein:1g:2~156 40~42
    4022 8uvs:2w
    (2.75Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 53~54
    MG:2w:105 74~75
    MG:2w:106 74~75
    MG:2w:107 51~52,63
    MG:2w:108 56~57
    4023 8uvs:2x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:2i:2~128 32~33,35
    protein:2m:3~124 28~29
    K:2A:3393 75~76
    MG:2x:101 75~76
    4024 8uvs:2y
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    protein:21:2~98 73~75
    protein:2g:2~156 31~32,40~42
    MG:2y:102 69~70
    MG:2y:105 12~13
    4025 8ux4:AM
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21DDE RF00005 Saccharomyces
    cerevisiae
    4932    		 N/A Assembly1
    rna:AL:13~1649 29~32,34,38~42
    rna:AN:1~13 31~32,34~40
    rna:A:8~3293 74~76
    protein:o:35~278 32~34
    4026 8uxa:AM
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21DDE RF00005 Saccharomyces
    cerevisiae
    4932    		 N/A Assembly1
    rna:AL:13~1649 30~32,34,38~39
    rna:AN:1~13 35~37
    rna:A:8~3293 12~13,73~76
    protein:o:35~278 32~35
    4027 8uye:A
    (5.9Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS00029156BA RF03117 Pipistrellus
    bat
    coronavirus
    HKU5
    694008    		 38427602
    38076883
    4028 8uyg:A
    (6.4Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS00029156BA RF03117 Pipistrellus
    bat
    coronavirus
    HKU5
    694008    		 38427602
    38076883
    4029 8uyj:A
    (7.3Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS00029156BA RF03117 Pipistrellus
    bat
    coronavirus
    HKU5
    694008    		 38427602
    38076883
    4030 8uyk:A
    (6.9Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS0002915673 RF03117 Middle
    East
    respiratory
    syndrome-related
    coronavirus
    1335626    		 38427602
    38076883
    4031 8uyl:A
    (6.4Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS0002915673 RF03117 Middle
    East
    respiratory
    syndrome-related
    coronavirus
    1335626    		 38427602
    38076883
    4032 8uym:A
    (6.4Å)
    		 135 GO:0039694 (P) viral RNA genome replic... URS0002915673 RF03117 Middle
    East
    respiratory
    syndrome-related
    coronavirus
    1335626    		 38427602
    38076883
    4033 8uyp:A
    (7.1Å)
    		 143 GO:0039694 (P) viral RNA genome replic... URS0002915698 RF03120 SARS
    coronavirus
    Tor2
    227984    		 38427602
    38076883
    4034 8uys:A
    (4.7Å)
    		 124 GO:0039694 (P) viral RNA genome replic... URS00029156BB RF03120
    RF03117    		 Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 38427602
    38076883
    4035 8v9j:y
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~32,34,41
    rna:v:1~3 35~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    protein:i:25~150 33~35
    4036 8v9k:y
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~31,34,40~41
    rna:v:1~3 34~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    protein:i:25~150 33~34
    4037 8v9l:y
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~32,34,37~38,40~41
    rna:v:1~4 35~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    protein:i:25~150 33,35
    4038 8vci:A
    (6.1Å)
    		 118 GO:0075523 (P) viral translational fra... URS0002915679 RF00507 Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 38727003
    4039 8vft:3
    (3.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 41037622 Assembly1
    protein:o:2~104 75~76
    protein:QQ:5~146 32~33,35
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 30~32,34,40~41
    rna:w:16~21 35~37
    4040 8vio:5
    (3.26Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39913204 Assembly1
    rna:A:2~3120 3~4,20,57,71~73,76~77
    rna:a:7~1517 31~32,41~42
    protein:o:25~150 34~35
    4041 8vm8:R
    (1.54Å)
    		 93 GO:0039689 (P) negative stranded viral... URS00029EB36B RF00386 synthetic
    construct
    32630    		 39036953 Assembly1
    protein:H:3~229 62~68
    4042 8vm9:C
    (2.2Å)
    		 85 GO:0039689 (P) negative stranded viral... URS00029EB36E RF00386 synthetic
    construct
    32630    		 39036953 Assembly2
    protein:L:1~215 44,54~56
    4043 8vm9:R
    (2.2Å)
    		 85 GO:0039689 (P) negative stranded viral... URS00029EB36E RF00386 synthetic
    construct
    32630    		 39036953 Assembly1
    protein:B:1~215 44~45,54~56
    4044 8vma:C
    (2.54Å)
    		 88 GO:0039689 (P) negative stranded viral... URS00029EB34A RF00386 synthetic
    construct
    32630    		 39036953 Assembly1
    protein:A:4~228 59,61~65
    protein:L:1~215 47,58~59
    4045 8vma:R
    (2.54Å)
    		 88 GO:0039689 (P) negative stranded viral... URS00029EB34A RF00386 synthetic
    construct
    32630    		 39036953 Assembly1
    protein:A:4~228 81~82
    protein:B:1~215 58~59
    protein:H:4~228 59~65
    4046 8vmb:R
    (2.97Å)
    		 83 GO:0039689 (P) negative stranded viral... URS00029EB30E RF00386 synthetic
    construct
    32630    		 39036953 Assembly1
    protein:H:3~230 18~23
    4047 8vpv:A
    (3.04Å)
    		 100 GO:0008616 (P) tRNA queuosine(34) bios... URS00029EB331 RF02680 Faecalibacterium
    prausnitzii
    853    		 39413212 Assembly1
    PRF:A:201 7~8,17~18,85
    4048 8vqv:A
    (2.43Å)
    		 64 GO:0006730 (P) one-carbon metabolic pr...
    GO:1900371 (P) regulation of purine nu...    		 URS0000868555 RF01750 Schaalia
    odontolytica
    1660    		 40310613 Assembly1
    rna:A-2:1~64 9~15,17~19,28,35~39,49~63
    UG4:A:103 51,58~59
    UG4:A-2:103 11~12,29
    MG:A-2:101 11,29
    4049 8vs9:ATRN
    (3.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005F0912 RF00005 Escherichia
    coli
    562    		 38500588 Assembly1
    rna:16S:2~1540 35~37
    rna:23S:1~2903 37~38,52,56,63,74~76
    rna:TMRN:1~363 30~31,34~41
    protein:L16:1~136 53~57
    protein:SMPB:11~160 14~17
    4050 8vs9:ETRN
    (3.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 38500588 Assembly1
    rna:23S:1~2903 17A,19~20,71,75~76
    protein:L1:3~225 53~54,61~62
    protein:S07:1~151 31~33,35~37,41
    4051 8vs9:TMRN
    (3.9Å)
    		 363 GO:0006401 (P) RNA catabolic process URS000037602E RF00023 Escherichia
    coli
    562    		 38500588 Assembly1
    rna:16S:2~1540 90~91,93~94
    rna:23S:1~2903 3,25~26,59~61,75~76,361~363
    rna:ATRN:1~76 82~85,90~93
    protein:L05:1~177 14,26~27,343
    protein:S03:1~206 96~97,99~100,102~104,129,131,1
    82~186
    protein:S04:1~205 97~98
    protein:S05:9~165 95~99
    protein:S12:1~123 91~92
    protein:S13:1~114 29~30
    protein:S19:2~80 74,315~316
    protein:SMPB:11~160 8~9,17~20,86~89,334~336,354
    4052 8vsa:ATRN
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005F0912 RF00005 Escherichia
    coli
    562    		 38500588 Assembly1
    protein:L16:1~136 53~56
    rna:23S:1~2903 19~20,37~38,52,56,63,74~76
    rna:TMRN:1~363 30~31,34~37,39~41
    rna:16S:2~1540 35~37
    4053 8vsa:TMRN
    (3.7Å)
    		 363 GO:0006401 (P) RNA catabolic process URS000037602E RF00023 Escherichia
    coli
    562    		 38500588 Assembly1
    protein:L05:1~177 28,320,343
    protein:S03:1~206 99~100,102,129,131,183~185
    protein:S05:9~165 95~99
    protein:S12:1~123 91~92
    protein:S13:1~114 29~30
    protein:S19:2~80 74,315~316
    protein:SMPB:11~160 8~10,17~20,86~89,334~336,354
    rna:23S:1~2903 3,25~26,60~61,75~76,361~363
    rna:16S:2~1540 90~91,93~94
    rna:ATRN:1~76 82~84,90~93
    4054 8vtu:1w
    (2.4Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    protein:1m:2~124 38~39
    MG:1w:101 33,36
    MG:1w:103 51~52,63
    MG:1w:104 67~68
    4055 8vtu:1x
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:10:2~84 2,64,76
    protein:1i:2~128 32~35
    protein:1m:2~124 28~29
    K:1A:3528 75~76
    MG:1x:105 50,64
    MG:1x:110 75~76
    4056 8vtu:1y
    (2.4Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 4,19,56,71,76
    protein:11:2~98 74~75
    protein:1g:2~156 30~32,40~42
    4057 8vtu:2w
    (2.4Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    protein:2m:3~124 38,40
    MG:2w:102 69~70
    MG:2w:104 74~75
    MG:2w:106 51,62~63
    4058 8vtu:2x
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:20:2~84 2,76
    protein:2i:2~128 32~35
    protein:2m:3~124 28~29
    K:2A:3402 75~76
    MG:2x:102 22~23
    MG:2x:107 75~76
    4059 8vtu:2y
    (2.4Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 3,19,56,71~72,76
    rna:2x:1~76 35~36
    protein:21:2~98 74~75
    protein:2g:2~156 40~41
    protein:2k:13~126 39~40
    MG:2y:101 70~71
    MG:2y:102 12~13
    4060 8vtv:1w
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    MG:1w:101 33,36
    MG:1w:103 51~52,63
    MG:1w:104 67~68
    MG:1w:105 65~66
    MG:1w:106 1~2
    4061 8vtv:1x
    (2.55Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:10:2~84 2,64,76
    protein:1i:2~128 33~35
    protein:1m:2~124 28~29
    K:1A:3553 75~76
    MG:1x:104 32,37
    MG:1x:106 54~55,58
    MG:1x:110 75~76
    4062 8vtv:1y
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 4,19,56,71,76
    protein:11:2~98 74~76
    protein:1g:2~156 30,32,40~42
    MG:1y:101 75~76
    4063 8vtv:2w
    (2.55Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    protein:2m:3~124 38~39
    MG:2w:102 69~70
    MG:2w:103 11~12
    MG:2w:104 74~75
    MG:2w:105 74~75
    MG:2w:106 51~52,62~63
    4064 8vtv:2x
    (2.55Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:20:2~84 2,76
    protein:2i:2~128 32~33
    protein:2m:3~124 28~29
    K:2A:3432 75~76
    MG:2A:3836 75~76
    MG:2x:101 22~23
    4065 8vtv:2y
    (2.55Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 3,19,56,76
    rna:2x:1~76 35~36
    protein:21:2~98 73~75
    protein:2g:2~156 40~41
    MG:2y:101 69~70
    MG:2y:102 70~71
    MG:2y:103 9,12~13
    4066 8vtx:1w
    (2.4Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 53~54
    MG:1w:101 32~33,36
    MG:1w:102 51~52,63
    MG:1w:103 67~68
    MG:1w:104 65~66
    4067 8vtx:1x
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:10:2~84 2,64,76
    protein:1i:2~128 32~35
    protein:1m:2~124 28~29
    K:1A:3508 75~76
    MG:1x:103 20,59~60
    MG:1x:105 50,64
    MG:1x:106 54~55,58
    MG:1x:108 9,22
    MG:1x:110 75~76
    4068 8vtx:1y
    (2.4Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly1
    rna:1A:6~2897 19,56,71,76
    protein:11:2~98 73,75
    protein:1g:2~156 31~33,40~42
    4069 8vtx:2w
    (2.4Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 53~54
    protein:2m:3~124 39~40
    MG:2w:102 69~70
    MG:2w:105 74~75
    MG:2w:106 51,63
    MG:2w:107 56~57
    4070 8vtx:2x
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:20:2~84 2,76
    protein:2i:2~128 32~33,35
    protein:2m:3~124 28~29
    K:2A:3423 75~76
    MG:2x:101 75~76
    MG:2x:104 7,14
    4071 8vtx:2y
    (2.4Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39039256 Assembly2
    rna:2A:6~2897 3~4,19,56,71~72,76
    protein:21:2~98 73~75
    protein:2g:2~156 31~32,40~42
    MG:2y:102 70~71
    MG:2y:104 12~13
    4072 8vu0:C
    (2.64Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB340 RF00005 Escherichia
    coli
    562    		 39075051 Assembly1
    protein:A:5~111 73~76
    4073 8vu0:D
    (2.64Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB340 RF00005 Escherichia
    coli
    562    		 39075051 Assembly1
    protein:B:5~111 73~76
    4074 8vvj:A
    (2.15Å)
    		 64 GO:0006730 (P) one-carbon metabolic pr...
    GO:1900371 (P) regulation of purine nu...    		 URS0000868555 RF01750 Schaalia
    odontolytica
    1660    		 40310613 Assembly1
    rna:A-2:1~64 9~15,19~20,28,34~39,49~63
    MG:A:101 15,19
    MG:A-2:102 11,29
    A1AD3:A:104 51,58~59
    A1AD3:A-2:104 11~12,29
    4075 8w2o:R
    (3.49Å)
    		 327 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005685 (C) U1 snRNP
    GO:0000243 (C) commitment complex    		 URS000012D749 RF00488 Saccharomyces
    cerevisiae
    S288C
    559292    		 38688558 Assembly1
    protein:A:11~188 34,560~561,563~564
    protein:B:3~196 10~11,61,63~66,132~133,135,251
    ,254,256~258,260,264,266~268,2
    84,286,297~299
    protein:C:1~147 59~60,62,67~68,141~145,147~150
    protein:D:1~541 74~75,114~116,118,130,254,256,
    268
    protein:E:43~627 76~77
    protein:G:44~295 79,118~120
    protein:K:4~132 121~123,156~159,173,278~279,30
    2,556
    protein:L:1~119 19,35~36,547~548,557,559,562
    protein:M:2~108 549~552,558~560,564~565
    protein:N:5~95 114,172,541,555
    protein:O:9~92 553,560
    protein:P:12~85 552~553,558~560
    protein:Q:2~77 554~555
    4076 8wib:C
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002915731 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38245551 Assembly1
    rna:A:2~3120 71,75~76
    protein:h:2~154 32,40~41
    protein:w:1~126 34~35
    4077 8wic:C
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002915731 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38245551 Assembly1
    rna:A:2~3120 71,75~76
    4078 8wid:b
    (3.5Å)
    		 18 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002915731 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38245551 Assembly1
    protein:h:2~154 32,40
    protein:w:1~126 34~35
    4079 8wnd:R
    (2.8Å)
    		 70 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB362 RF00005 Escherichia
    coli
    562    		 39738040 Assembly1
    protein:B:8~1041 25,32~36,38,40~43,76
    4080 8wnd:T
    (2.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB362 RF00005 Escherichia
    coli
    562    		 39738040 Assembly1
    protein:A:6~1072 19~21,24,32~36,38~43,56,71,74~
    76
    4081 8xi2:B
    (2.6Å)
    		 86 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000234B7C RF00020 Chlamydomonas
    reinhardtii
    3055    		 39415054 Assembly1
    protein:A:84~2079 11~12,14~15,19,26,28~32,40~44,
    46~52,54,56~60,67
    protein:a:5~94 92~93
    protein:g:7~71 91~92
    protein:e:8~87 90,97
    protein:f:7~77 89~90,95,97~98
    protein:d:11~110 88~89,95~97,99
    protein:c:1~88 88,94,96
    protein:b:7~115 87,93~94
    protein:P:9~235 33,54~55
    protein:T:175~518 35,53
    protein:U:1~26 38~39,48~49
    rna:F:1~92 44~46
    rna:5:-7~-1 42~46
    4082 8xi2:F
    (2.6Å)
    		 92 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00029EB376 RF00026 Chlamydomonas
    reinhardtii
    3055    		 39415054 Assembly1
    protein:A:84~2079 48~50,56~60,62~65
    protein:I:69~761 91~92
    protein:J:21~643 53,71~72,74,76~77
    protein:P:9~235 51~52,61
    protein:M:441~543 75,80~82
    protein:O:18~303 15~23,53
    protein:N:4~179 1~2,12~17,20~21
    protein:W:47~576 1~3,7~9,15,36
    protein:L:7~833 37,41~42,53,74
    rna:B:7~103 59~60,62~63
    rna:H:1~40 39~40,42~49,72~73,75,77,79,81~
    87,89~90,92
    rna:3:1~101 23~29,31~38
    MG:F:201 65,67
    MG:F:202 47,67
    MG:F:205 48~49,67
    MG:F:206 48,64
    4083 8xi2:H
    (2.6Å)
    		 40 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003ADA0E RF00004 Chlamydomonas
    reinhardtii
    3055    		 39415054 Assembly1
    protein:A:84~2079 16,19,21~25,27,30~31
    protein:M:441~543 14~15,17~19
    protein:R:35~302 18~19
    rna:F:1~92 1,3~13,15,17~18,20~23,26~29
    rna:3:1~101 32,34~40
    4084 8xsx:CC
    (2.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 38942792
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    rna:L5:1~5069 3~4,69~71,74~75
    rna:S2:1~1869 29~31,33,39~40
    protein:Lo:2~106 74~75
    protein:Lz:1~217 60~61
    protein:SQ:3~146 32~34
    4085 8xsy:CC
    (3.0Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 38942792
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    rna:L5:1~5069 2~4,18,69~70,74~75
    rna:S2:1~1869 29,36
    protein:Lo:2~106 1~2,64,74~75
    4086 8xsz:CC
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 38942792
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    rna:L5:1~5069 3,69~70,74~75
    rna:S2:1~1869 28~31,33,37~41
    rna:CE:18~28 33~36
    protein:SP:10~138 29~31
    protein:SQ:3~146 32,34
    4087 8xsz:CD
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 38942792
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    rna:L5:1~5069 36~37,70~71,73~75
    rna:S2:1~1869 33~36
    rna:CE:18~28 33~36
    protein:LI:2~214 1~2,51~52,62
    4088 8xu8:B
    (3.4Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    protein:G:4~297 1,5~8,10~11,13~17,22,26~27,31,
    33~35,44~50,61~63,67,115~116,1
    18~121
    protein:I:23~244 85~87,97~98
    protein:L:2~219 64~67,92~93
    protein:M:6~174 5,17,27~28,39~40,42~44,52~53,5
    5~57
    protein:U:2~172 76~78,87~89,96~97,100~101
    protein:V:2~160 10~11
    4089 8xu8:C
    (3.4Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 1~22,24~37,40,53~54,104,109,11
    3~115,118,126,129,136~137,140~
    152,154~157
    protein:F:2~362 21~22,26~27
    protein:J:24~256 149~152,154~156
    protein:P:2~204 140~143
    protein:R:2~184 3~5,10~14
    protein:Z:22~142 59~60,99~100,131~136,147
    protein:a:2~126 22~24,70~74,83~85,87,91
    protein:j:2~120 35~39,49,60,63~66,87,97~98
    protein:l:2~82 32~36,41~43,57~58,94~95,103,11
    1
    protein:n:2~51 45~46,51~53,75,112~113
    4090 8xu8:s
    (3.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 34~37
    rna:A:3~3396 38,53,64,74~76
    protein:L:2~219 54,73
    protein:SK:1~108 37~38,40~41
    4091 8xu8:t
    (3.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 30~32,34,38~40
    rna:A:3~3396 12~13,25,74~76
    protein:L:2~219 1,64,73~75
    protein:M:6~174 20,56~57
    protein:SF:3~143 32~33,35
    4092 8xze:A
    (2.34Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    THG:A:101 12~14,18,21,38,41~42
    SPM:A:106 31~32
    4093 8xzk:A
    (2.58Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061
    4094 8xzl:A
    (2.13Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    DHF:A:101 14,18,21,37,41~42
    SPM:A:106 27,31~32
    4095 8xzm:A
    (1.98Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    MG:A:103 6~7
    NPR:A:106 13~14,18,21,41~42
    SPM:A:107 27,31~32
    4096 8xzn:A
    (1.82Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    H4B:A:101 13~14,18,21,41~42
    SPM:A:104 27,31~32
    4097 8xzo:A
    (1.97Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    SPM:A:201 27,31~32
    GUN:A:202 14,18,21,41~42
    MG:A:204 4~5
    4098 8xzp:A
    (2.18Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    MG:A:103 49~50
    MG:A:104 44~46
    A1LXN:A:106 13~14,18,21,41~42
    SPM:A:107 27,31~32
    4099 8xzq:A
    (1.83Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    AZG:A:101 14,18,21,41~42
    SPM:A:102 26~27,31~32
    MG:A:105 49~50
    MG:A:106 4~5
    MG:A:107 45~46
    4100 8xzr:A
    (1.83Å)
    		 53 GO:0010468 (P) regulation of gene expr... URS00029EB367 RF02977 unidentified
    eubacterium
    clone
    A70
    41312    		 38769061 Assembly1
    ANG:A:101 13~14,18,21,41~42
    SPM:A:102 27,31~32
    MG:A:107 14~15
    << < 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.