SEQ2FUN

FURNA
Download all results in tab-seperated text for 4576 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    4201 9cbx:N
    (2.2Å)
    		 387 GO:0000372 (P) Group I intron splicing URS0002311974 RF00028 Tetrahymena
    thermophila
    5911    		 40068818 Assembly1
    MG:N:501 257~258,305
    MG:N:502 183~184,186
    MG:N:503 184,186~188
    MG:N:504 301~302
    MG:N:505 96,299~300
    MG:N:506 165~168
    MG:N:507 307~308
    MG:N:508 256,273
    MG:N:509 307~308
    MG:N:510 304,306
    MG:N:511 276~277
    MG:N:512 208,305
    MG:N:513 262,305~306
    MG:N:514 97,300~301
    MG:N:515 273~274
    MG:N:516 163~164
    MG:N:517 28,94~95
    MG:N:518 168~170
    MG:N:519 103,268~269
    MG:N:520 298~299
    MG:N:521 254~255
    MG:N:523 270,272
    MG:N:524 172~173
    MG:N:525 165~167
    MG:N:526 136,187
    MG:N:527 33,298~299
    MG:N:528 31~32
    MG:N:529 254~255
    MG:N:530 138,178
    MG:N:532 261~262
    MG:N:535 207,262
    MG:N:538 310,358
    MG:N:540 106~107
    MG:N:541 323,326
    MG:N:542 140,214
    MG:N:543 60,277~278
    MG:N:545 104~105
    MG:N:548 257,270
    MG:N:549 56~57
    MG:N:552 153~154
    MG:N:553 205~206
    4202 9cby:N
    (2.3Å)
    		 387 GO:0000372 (P) Group I intron splicing URS0002311974 RF00028 Tetrahymena
    thermophila
    5911    		 40068818 Assembly1
    MG:N:501 257~258,305
    MG:N:502 183~184,186
    MG:N:503 184,186~188
    MG:N:504 96,299~300
    MG:N:505 301~302
    MG:N:506 258~259,261
    MG:N:507 256,273
    MG:N:508 304,306
    MG:N:509 307~308
    MG:N:510 259,261
    MG:N:511 168,188
    MG:N:512 307~308
    MG:N:514 256,302~303
    MG:N:515 256,272~273
    MG:N:516 183,188
    MG:N:517 270,272
    MG:N:519 97,300~301
    MG:N:520 111~112
    MG:N:521 184~185,213~214
    MG:N:522 138,178
    MG:N:523 165~167
    MG:N:524 105~106
    MG:N:525 298~299
    MG:N:526 136,187
    MG:N:527 273~274
    MG:N:529 164,177,180
    MG:N:531 299~300
    MG:N:532 260~261,264
    MG:N:533 103~104
    MG:N:535 261~262
    MG:N:537 274~275
    MG:N:538 33,298~299
    MG:N:539 263,313
    MG:N:541 300,302
    MG:N:544 187~189
    MG:N:546 46~47
    MG:N:549 271,303,307
    MG:N:550 327~328
    MG:N:554 111~112
    MG:N:556 47~48
    4203 9cg5:Z
    (2.59Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB308 RF00005 Escherichia
    coli
    562    		 39222680 Assembly1
    rna:A:2~1534 30~32,34,38~41
    rna:X:13~21 34~37
    rna:a:1~2903 11~13,24~25,74~76
    protein:I:4~130 32~35
    protein:f:2~178 19,56~57
    4204 9cg6:Z
    (2.61Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB308 RF00005 Escherichia
    coli
    562    		 39222680 Assembly1
    rna:A:2~1534 30~32,34,38,40~41
    rna:X:13~21 34~37
    rna:a:1~2903 11~12,24~25,74~76
    protein:I:4~130 33~35
    protein:f:2~178 19,56~57
    4205 9cg7:Z
    (2.75Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00029EB308 RF00005 Escherichia
    coli
    562    		 39222680 Assembly1
    rna:A:2~1534 30~32,34,38,40~41
    rna:X:13~21 34~37
    rna:a:1~2903 11~12,24~25,74~76
    protein:I:4~130 33~35
    protein:f:2~178 19,56~57
    4206 9cpa:1
    (6.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Oryctolagus
    cuniculus
    9986    		 40791316 Assembly1
    rna:2:1~1863 29~32,34,39~42
    protein:S:6~146 32~35
    protein:A:6~271 18~19,39~42,54,56,62
    protein:B:52~473 74~76
    4207 9cxf:A
    (3.02Å)
    		 200 GO:0000373 (P) Group II intron splicing URS000305491E RF03072
    RF02001    		 Clostridium
    acetobutylicum
    1488    		 38915706 Assembly1
    MG:A:302 80,82
    4208 9d0g:1w
    (2.5Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    protein:1m:2~124 38~40
    MG:1w:101 33,36
    MG:1w:103 62~63
    4209 9d0g:2w
    (2.5Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly2
    rna:2A:6~2897 37~38,55~56,64
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 53~54
    protein:2m:3~124 38~40
    MG:2w:106 51~52,62~63
    4210 9d0h:1w
    (2.5Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    protein:1m:2~124 38~39
    MG:1w:101 33,36
    MG:1w:103 62~63
    4211 9d0h:2w
    (2.5Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly2
    rna:2A:6~2897 37~38,55~56,64
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    protein:2m:3~124 38~39
    MG:2w:102 69~70
    MG:2w:106 51~52,62~63
    MG:2w:107 55,57
    4212 9d0i:1w
    (2.45Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 53~54
    protein:1m:2~124 38~39
    MG:1w:101 33,36
    MG:1w:103 62~63
    4213 9d0i:2w
    (2.45Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40787583 Assembly2
    rna:2A:6~2897 19,37~38,56,64
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 53~54
    protein:2m:3~124 38~39
    MG:2w:106 51~52,63
    4214 9d0j:1w
    (2.5Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40055575 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 53~54
    protein:1m:2~124 38~39
    MG:1w:102 52,62~63
    MG:1w:104 32~33,36
    4215 9d0j:1x
    (2.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 40055575 Assembly1
    rna:1A:6~2897 2~3,11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    rna:1y:1~76 39~40
    protein:1G:2~182 19,56~57
    protein:1i:2~128 33,35
    protein:1m:2~124 28~29
    MG:1x:102 18~19
    MG:1x:103 59~60
    MG:1x:106 9,22
    MG:1x:107 50,64
    MG:1x:108 75~76
    4216 9d0j:1y
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40055575 Assembly1
    rna:1A:6~2897 19,56,71~72,76
    rna:1x:2~76 35~36
    protein:1g:2~156 31,40~42
    MG:1A:3550 75~76
    4217 9d0j:2w
    (2.5Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40055575 Assembly2
    rna:2A:6~2897 37~38,56,64
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    protein:2m:3~124 39~40
    MG:2w:102 51~52,63
    4218 9d0j:2x
    (2.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 40055575 Assembly2
    rna:2A:6~2897 2,11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    rna:2y:1~76 39~40
    protein:2G:2~182 56~57
    protein:2i:2~128 32~33,35
    K:2x:101 75~76
    MG:2x:103 22~23
    MG:2x:106 75~76
    4219 9d0j:2y
    (2.5Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 40055575 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:2~76 35~36
    protein:21:2~98 73~75
    protein:2g:2~156 31~32,40~42
    4220 9d7r:1x
    (2.7Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 2~3,11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38,40~41
    rna:1v:10~22 34~37
    rna:1y:1~76 39~40
    protein:1i:2~128 33,35
    protein:1w:102~350 36~37,74,76
    MG:1A:3780 75~76
    MG:1x:101 51,62
    4221 9d7r:1y
    (2.7Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 19,56,71~72,76
    rna:1a:4~1533 35,37
    rna:1x:1~76 35~36
    protein:1g:2~156 31~32,37,40~42
    MG:1y:101 73~74
    4222 9d7r:2x
    (2.7Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 2~3,12~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:10~22 34~37
    rna:2y:1~76 39~40
    protein:2G:2~182 19,56
    protein:2i:6~128 32~35
    protein:2m:4~118 28~29
    protein:2w:102~354 1,36~37,74,76
    4223 9d7r:2y
    (2.7Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2a:4~1532 35,37
    rna:2x:1~76 35~36
    protein:2g:2~156 30~32,37,40~42
    protein:2k:13~126 39~40
    4224 9d7s:1x
    (2.85Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 2~3,11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:10~22 34~37
    rna:1y:1~76 39~40
    protein:1G:2~182 19,56
    protein:1i:2~128 33~35
    protein:1m:2~119 28~29
    protein:1w:102~350 36,74,76
    MG:1x:101 51,62
    4225 9d7s:1y
    (2.85Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 19,56,76
    rna:1a:4~1533 35,37~38
    rna:1x:1~76 35~36
    protein:1g:2~156 30~32,40~42
    MG:1y:102 73~74
    4226 9d7s:2x
    (2.85Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 2~3,11~13,24~25,74~76
    rna:2a:4~1532 29~32,34,38~39,41
    rna:2v:10~22 34~37
    rna:2y:1~76 39~40
    protein:2G:2~182 19,56~57
    protein:20:8~84 63~64
    protein:2i:6~128 32~35
    protein:2m:4~118 28~29
    protein:2w:102~354 36~37,74,76
    MG:2x:104 51,62
    4227 9d7s:2y
    (2.85Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:1~76 35~36
    protein:2g:2~156 30~33,37,40~42
    protein:2k:13~126 39~40
    4228 9d7t:1x
    (2.7Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 2~3,11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38,40~41
    rna:1v:10~22 34~37
    rna:1y:1~76 39~40
    protein:1i:2~128 33~35
    protein:1w:102~350 36,76
    MG:1w:402 75~76
    MG:1x:101 51,63
    4229 9d7t:1y
    (2.7Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly1
    rna:1A:6~2897 19,71~72,76
    rna:1x:1~76 35~36
    protein:1g:2~156 30~32,40~42
    4230 9d7t:2x
    (2.7Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 2~3,12~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:10~22 34~37
    protein:2G:2~182 19,56~57
    protein:20:8~84 63~64
    protein:2i:6~128 33,35
    protein:2m:4~118 28~29
    protein:2w:102~354 36~37,74,76
    MG:2x:104 51,62~63
    MG:2x:105 75~76
    4231 9d7t:2y
    (2.7Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39415050
    39415050    		 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    protein:2g:2~156 31~32,37,40~42
    4232 9d85:T
    (3.59Å)
    		 65 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED95A RF00005 Methanocaldococcus
    jannaschii
    2190    		 39639027 Assembly1
    protein:C:3~147 1,73~76
    protein:K:-2~324 31~32,40
    4233 9d9o:R
    (2.41Å)
    		 36 GO:0039689 (P) negative stranded viral... N/A RF00386 Coxsackievirus
    B3
    12072    		 N/A Assembly1
    protein:A:0~182 49~53,61~62,69~71
    protein:B:0~182 53~55,64,66~69,77~78
    4234 9d9p:R
    (2.69Å)
    		 90 GO:0039689 (P) negative stranded viral... N/A RF00386 Coxsackievirus
    B3
    12072    		 N/A Assembly1
    protein:A:0~182 50~53,61~62,69~71
    protein:B:0~182 52~55,64,66~69,78
    4235 9dcf:C
    (2.87Å)
    		 77 GO:0039689 (P) negative stranded viral... URS0003402224 RF00386 Coxsackievirus
    B3
    (strain
    Nancy)
    103903    		 40073119 Assembly1
    protein:A:1~180 51~54,63,65~68,77
    protein:B:2~180 49~52,60~61,68~70
    4236 9de5:B
    (2.75Å)
    		 57 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly1
    protein:A:44~60 20~24,26,28,36~37
    4237 9de5:C
    (2.75Å)
    		 55 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly2
    K:C:101 7~8,52~54
    4238 9de5:D
    (2.75Å)
    		 54 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly4
    K:D:101 5,7~8,52~54
    4239 9de5:E
    (2.75Å)
    		 57 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly3
    K:E:101 7~8,52~54
    4240 9de6:A
    (2.35Å)
    		 57 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly1
    MG:A:101 5,52~54
    4241 9de6:B
    (2.35Å)
    		 56 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0003054917 RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly2
    MG:B:101 10~11,50
    4242 9de7:A
    (2.25Å)
    		 58 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS000305493B RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622
    4243 9de8:A
    (2.76Å)
    		 56 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS000305495B RF00250 Human
    immunodeficiency
    virus
    1
    11676    		 40050622 Assembly1
    CA:A:101 23~24,26
    4244 9dfc:1w
    (2.5Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 52~54
    protein:1m:2~126 37~40
    protein:1z:1~18 29~31
    MG:1w:102 33,36
    MG:1w:103 51~52,63
    4245 9dfc:1x
    (2.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:10:2~84 2,63~64,76
    protein:1i:2~128 33,35
    protein:1m:2~126 28~29,35
    K:1A:3574 75~76
    MG:1x:104 50,64
    MG:1x:107 9,22
    MG:1x:108 75~76
    4246 9dfc:1y
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 19,56,71,76
    protein:11:2~98 73~74
    protein:1g:2~156 30~33,40~42
    4247 9dfc:2w
    (2.5Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 53~54
    protein:2m:3~124 37,39
    protein:2z:1~18 30~31
    MG:2w:102 4,69~70
    MG:2w:106 74~75
    MG:2w:108 52,62~63
    4248 9dfc:2x
    (2.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:20:2~84 2,76
    protein:2i:2~128 33,35
    protein:2m:3~124 28~29
    K:2A:3467 75~76
    MG:2x:102 75~76
    4249 9dfc:2y
    (2.5Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:1~76 35~36
    protein:21:2~98 73~75
    protein:2g:2~156 31,40~41
    MG:2y:102 70~71
    MG:2y:104 12~13
    MG:2y:106 10,26
    4250 9dfd:1w
    (2.6Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    protein:1Q:1~141 53~54
    protein:1m:2~126 37,39
    protein:1z:1~17 29~31
    MG:1w:102 51~52,63
    4251 9dfd:1x
    (2.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    protein:1G:2~182 19,56~57
    protein:10:2~84 2,63~64,76
    protein:1i:2~128 33~35
    protein:1m:2~126 28~29,35
    K:1A:3569 75~76
    MG:1x:103 20,60
    MG:1x:108 75~76
    4252 9dfd:1y
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly1
    rna:1A:6~2897 19,56,76
    rna:1x:1~76 35~36
    protein:11:2~98 74~75
    protein:1g:2~156 32~33,40~41
    4253 9dfd:2w
    (2.6Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    protein:2Q:1~141 52~54
    protein:2z:1~17 30~31
    MG:2w:102 4,70
    MG:2w:106 74~75
    MG:2w:108 52,62~63
    4254 9dfd:2x
    (2.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    protein:2G:2~182 56~57
    protein:2i:2~128 33~35
    protein:2m:3~124 28~29
    K:2x:101 75~76
    MG:2x:102 75~76
    4255 9dfd:2y
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 39372947 Assembly2
    rna:2A:6~2897 3,19,56,71~72,76
    rna:2a:4~1532 37~38
    rna:2x:1~76 35~36
    protein:21:2~98 73~75
    protein:2g:2~156 31,40~42
    MG:2y:101 69~70
    MG:2y:102 70~71
    MG:2y:104 12~13
    4256 9dow:C
    (3.1Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000032F6AC RF00005 Homo
    sapiens
    9606    		 40036503
    938

    886

    979    		 Assembly1
    protein:A:72~577 10,26,32~38
    4257 9dp9:A
    (4.1Å)
    		 440 GO:0000372 (P) Group I intron splicing N/A RF00028
    RF00028    		 Powassan
    virus
    11083    		 40374626 Assembly1
    MG:A:502 45,376
    MG:A:506 39,56
    MG:A:509 41,88
    MG:A:512 39,85
    MG:A:519 89~90
    4258 9dpa:C
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000032F6AC RF00005 Homo
    sapiens
    9606    		 40036503
    938

    886

    979    		 Assembly1
    protein:A:72~577 12,26~28,33~38,44,67~69,71,73~
    76
    4259 9dpb:C
    (2.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000032F6AC RF00005 Homo
    sapiens
    9606    		 40036503
    938

    886

    979    		 Assembly1
    protein:A:72~577 26,32~38
    4260 9dpl:C
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000032F6AC RF00005 Homo
    sapiens
    9606    		 40036503 Assembly1
    protein:A:14~579 10~13,25~28,32~38,44~45,47,52~
    55,57~58,67~68,70~71,73~76
    4261 9drs:C
    (2.35Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:B:-2~831 1,10~12,67~68
    protein:D:1~341 19~20,45~46,57~58
    protein:E:-1~831 11~12,25~27,35~40
    EDO:C:101 14,24
    4262 9drs:F
    (2.35Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:A:1~341 19~20,45~46,57~58
    protein:B:-2~831 11~12,25~28,35~40
    protein:E:-1~831 10~11,67~68
    4263 9drt:C
    (2.51Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:B:-2~831 10~11,67~68
    protein:D:1~341 19~20,45~46,57~58
    protein:E:-2~831 11~12,25~27,35~40
    4264 9drt:F
    (2.51Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:A:0~341 19~20,44,57~58
    protein:B:-2~831 11~12,25~27,35~39
    protein:E:-2~831 10~11,67~68,76~77
    4265 9drv:C
    (2.46Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:B:-2~831 10~12,67~68
    protein:D:-2~341 19~20,46,57~58
    protein:E:-2~831 11~12,25~27,35~40
    4266 9drv:F
    (2.46Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    protein:A:1~341 19~20,44,46,57~58
    protein:B:-2~831 11~12,25~27,35~40
    protein:E:-2~831 10~12,68
    4267 9dtr:2
    (2.31Å)
    		 132 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 38746449 Assembly1
    rna:6:1~102 4~13,16~17,21~23,26~30
    rna:E:-14~21 27~28
    rna:I:1~95 33~48
    protein:A:127~2107 19~25,27,29~32,37~38
    protein:K:31~224 19,26
    protein:O:4~590 30~31
    protein:P:2~175 20~21
    protein:V:286~1145 31~33
    protein:W:1~170 144~145,1099,1167~1168
    protein:Y:26~111 1098,1100,1104,1106~1109,1136~
    1137
    protein:k:2~111 116~117,1149~1151
    protein:l:2~108 116~119,124
    protein:m:18~108 112,118~121,124
    protein:n:5~84 114~115
    protein:o:50~455 38,47~48
    protein:p:10~92 113,120
    protein:q:12~85 112~113,119~121
    protein:r:5~74 114~115
    protein:y:5~212 15~19
    4268 9dtr:5
    (2.31Å)
    		 173 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    4932    		 38746449 Assembly1
    rna:6:1~102 98~99
    rna:E:-14~21 96~100
    protein:A:127~2107 32~38,40~41,76~77,79~86,94~98,
    100~105,111~113,115,121~122
    protein:C:69~1008 43~46,71~72,75~76,159,161
    protein:K:31~224 110~111
    protein:L:2~157 123~125
    protein:P:2~175 88,108~109
    protein:R:1~119 93,102~103
    protein:b:4~102 7,171~172
    protein:d:5~85 169~170
    protein:e:8~93 168,175
    protein:f:12~85 167~168,173~176
    protein:h:2~108 6,153,171~172,174,177~178
    protein:j:18~108 167,173~177
    4269 9dtr:6
    (2.31Å)
    		 102 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 38746449
    383    		 Assembly1
    rna:2:4~1170 53,55~62,88~89,92~101
    rna:5:2~178 72~73,75
    rna:E:-14~21 59~60,77
    rna:I:1~95 45~51,58~59,79
    protein:A:127~2107 31,33,35~36,43~44,47~50,57,61~
    63,69~76,78~79
    protein:K:31~224 32,66~68
    protein:L:2~157 1,25~30,35~36
    protein:M:3~257 34~42,44
    protein:N:7~324 28~33,66
    protein:O:4~590 52~55,66~67,84~86
    protein:P:2~175 52,62~66,74,84~85
    protein:S:12~661 65~66,85~87,90~92
    protein:o:50~455 1,21~23,48
    protein:y:5~212 88~93
    MG:6:201 59~60,80
    K:6:202 52,59~60,80
    K:6:203 61,78,80~81
    K:6:204 50~51
    K:E:101 60,78,80
    4270 9dtt:B
    (3.6Å)
    		 67 GO:0039694 (P) viral RNA genome replic... URS00029EB303 RF02340 dengue
    virus
    type
    2
    11060    		 39677779 Assembly1
    protein:A:9~886 28~31,36,66~70
    4271 9e5h:A
    (2.8Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    CNC:A:101 17~19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:110 49,58
    MG:A:111 5~6
    K:A:113 49,63~64
    4272 9e5h:B
    (2.8Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    CNC:B:101 17~19,42~43,48~49,64,67
    N3D:B:102 34~36
    MG:B:110 49,58
    MG:B:111 5~6
    K:B:113 49,64,66
    4273 9e5i:A
    (1.42Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEN:A:101 17,19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:111 49,58
    K:A:113 64,66
    4274 9e5i:B
    (1.42Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEN:B:101 17~19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:105 11~12
    MG:B:107 5~6
    MG:B:113 49,58
    K:B:114 49,64,66
    4275 9e5j:A
    (2.35Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BES:A:101 17,19,42,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:111 5~7
    K:A:112 64,66
    4276 9e5j:B
    (2.35Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BES:B:101 17~19,42~43,48~49,64,66~67
    MG:B:103 11~12
    MG:B:104 5,8
    MG:B:110 49,58
    K:B:111 64,66
    4277 9e5k:A
    (1.9Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BER:A:101 17,19,42,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:110 49,58
    K:A:113 64,66
    4278 9e5k:B
    (1.9Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BER:B:101 17,19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:105 11~12
    MG:B:110 49,58
    K:B:113 64,66
    4279 9e5k:C
    (1.9Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly3
    A1BER:C:101 17,19,42~43,48~49,64,66~67
    N3D:C:102 33~36
    MG:C:105 11~12
    MG:C:110 49,58
    K:C:113 49,64,66
    4280 9e5k:D
    (1.9Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly4
    A1BER:D:101 17,19,42~43,48~49,64,66~67
    N3D:D:102 33~36
    MG:D:105 11~12
    MG:D:110 49,58
    MG:D:111 5~6
    K:D:113 49,64,66
    4281 9e5l:A
    (1.43Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BET:A:101 17,19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:104 1~2
    MG:A:111 49,58
    K:A:113 64,66
    4282 9e5l:B
    (1.43Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BET:B:101 17,19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:105 54~55
    MG:B:107 5~6
    MG:B:113 48~49
    K:B:114 64,66
    4283 9e5m:A
    (1.39Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEU:A:101 17,19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:111 49,58
    MG:A:112 5~6
    K:A:113 64,66
    4284 9e5m:B
    (1.39Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEU:B:101 17~19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:105 54~55
    MG:B:106 11~12
    MG:B:107 5~6
    K:B:114 49,64,66
    4285 9e5o:A
    (1.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEW:A:101 17~19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:110 49,58
    MG:A:111 5~6
    K:A:113 64,66
    4286 9e5o:B
    (1.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEW:B:101 17~19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:105 54~55
    MG:B:106 11~12
    MG:B:107 5~6
    MG:B:113 49,58
    K:B:114 49,64,66
    4287 9e5p:A
    (2.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEX:A:101 17,19,42,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:104 11~12
    MG:A:110 49,58
    MG:A:111 5~6
    K:A:112 49,64,66
    4288 9e5p:B
    (2.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEX:B:101 17,19,42~43,48~49,64,66~67
    N3D:B:102 33~35
    MG:B:105 5~6
    MG:B:108 31~32
    MG:B:111 49,58
    K:B:112 49,64,66
    4289 9e5q:A
    (1.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEY:A:101 17,19,42~43,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 4,12
    MG:A:111 49,58
    K:A:113 64,66
    4290 9e5q:B
    (1.36Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEY:B:101 17,19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:106 11~12
    MG:B:113 49,58
    K:B:114 64,66
    4291 9e5r:A
    (2.34Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BEZ:A:101 17,19,42,46,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:104 11~12
    MG:A:110 49,58
    K:A:112 64,66
    4292 9e5r:B
    (2.34Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BEZ:B:101 19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:104 11~12
    MG:B:105 5~6
    MG:B:111 49,58
    K:B:112 49,64,66
    4293 9e5s:A
    (2.55Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BE0:A:101 17,19,42,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:110 48,58
    MG:A:111 5~6
    K:A:113 64,66
    4294 9e5s:B
    (2.55Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BE0:B:101 17~19,42,48~49,64~67
    MG:B:105 11~12
    MG:B:112 49,57
    K:B:113 49,64,66
    4295 9e5t:A
    (2.19Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly1
    A1BE1:A:101 17,19,42,48~49,64,66~67
    N3D:A:102 33~36
    MG:A:105 11~12
    MG:A:110 49,58
    MG:A:111 5~6
    K:A:113 64,66
    4296 9e5t:B
    (2.19Å)
    		 76 GO:0010468 (P) regulation of gene expr... N/A RF01689 marine
    metagenome
    408172    		 40883492 Assembly2
    A1BE1:B:101 17~19,42~43,48~49,64,66~67
    N3D:B:102 33~36
    MG:B:106 11~12
    MG:B:107 5~6
    MG:B:113 49,58
    K:B:114 49,64,66
    4297 9e7d:C
    (3.11Å)
    		 72 GO:0005515 (F) protein binding
    GO:0051169 (P) nuclear transport
    GO:0005634 (C) nucleus    		 N/A RF00036 Human
    immunodeficiency
    virus
    1
    11676    		 N/A Assembly2
    protein:A:3~228 48~53
    4298 9e7d:R
    (3.11Å)
    		 72 GO:0005515 (F) protein binding
    GO:0051169 (P) nuclear transport
    GO:0005634 (C) nucleus    		 N/A RF00036 Human
    immunodeficiency
    virus
    1
    11676    		 N/A Assembly1
    protein:H:3~228 49~54
    4299 9e7e:C
    (2.75Å)
    		 72 GO:0005515 (F) protein binding
    GO:0051169 (P) nuclear transport
    GO:0005634 (C) nucleus    		 N/A RF00036 Human
    immunodeficiency
    virus
    1
    11676    		 N/A Assembly2
    protein:A:3~228 48~54
    4300 9e7e:F
    (2.75Å)
    		 72 GO:0005515 (F) protein binding
    GO:0051169 (P) nuclear transport
    GO:0005634 (C) nucleus    		 N/A RF00036 Human
    immunodeficiency
    virus
    1
    11676    		 N/A Assembly3
    protein:D:3~228 48~53
    << < 33 34 35 36 37 38 39 40 41 42 43 44 45 46 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.