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FURNA
Download all results in tab-seperated text for 17 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 3muv:R
    (3.2Å)
    		 91 GO:0035438 (F) cyclic-di-GMP binding URS000080DF93 RF01051 Vibrio
    cholerae
    666    		 20690679 Assembly1
    2BA:R:358 14,16~17,20~21,46~47,92~93
    2 4qk8:A
    (3.05Å)
    		 122 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS00021ED98F RF00379 Thermoanaerobacter
    pseudethanolicus
    496866    		 25086507 Assembly1
    2BA:A:201 5~8,45,68~72,82~83,108
    2BA:A:202 9,23~26,41~44,88,93,102~103
    3 4qk9:A
    (3.05Å)
    		 117 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS00021ED9C8 RF00379 Thermovirga
    lienii
    336261    		 25086507 Assembly1
    2BA:A:201 4~6,49,69~72,86~87,111~114
    2BA:A:202 8,26~29,45~47,92,97,106~107
    4 4qka:A
    (3.2Å)
    		 120 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS00021ED98F RF00379 Thermoanaerobacter
    pseudethanolicus
    496866    		 25086507 Assembly1
    2BA:A:201 5~8,45,68~72,82~83,108
    2BA:A:202 9,23~25,41~43,88,93,102~103
    5 4qlm:A
    (2.721Å)
    		 108 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080E09A RF00379 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    MB4
    273068    		 25086509 Assembly1
    2BA:A:203 6~9,45,69~72,84~85,109~112
    2BA:A:204 10,24~27,41~44,90~91,95,104
    6 4qln:A
    (2.65Å)
    		 117 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080E09A RF00379 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    MB4
    273068    		 25086509 Assembly1
    2BA:A:201 6~8,45,69~71,84~85,109~112
    2BA:A:202 10,24~26,41~43,91,95,104~105
    7 4w90:C
    (3.118Å)
    		 101 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080DDC9 RF00379 Bacillus
    subtilis
    1423    		 25271255 Assembly1
    2BA:C:201 9,25~28,60~62,95~96,100,109~11
    0
    2BA:C:202 5~7,64,80~82,89~90,114~116
    8 4w92:C
    (3.209Å)
    		 96 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080DDC9 RF00379 Bacillus
    subtilis
    1423    		 25271255 Assembly1
    2BA:C:208 5~7,64,80~82,89~90,114~116
    2BA:C:209 9,25~28,60~63,95~96,100,109~11
    0
    9 6n5k:A
    (3.098Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF5B RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,48,71~75,85~86,110~112
    2BA:A:202 9,26~29,44~46,91~92,96,105~106
    10 6n5n:A
    (2.951Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF65 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,48,71~75,85~86,110~111
    2BA:A:202 9,26~29,44~46,91~92,96,105~106
    11 6n5o:A
    (2.708Å)
    		 126 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF62 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,49,72~76,86~87,112~113
    2BA:A:202 9,27~30,45~47,92,97,106~107
    12 6n5p:A
    (2.991Å)
    		 127 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF7A RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,50,73~77,87~88,113
    2BA:A:202 9,28~31,46~48,93,98,107~108
    13 6n5q:A
    (2.946Å)
    		 128 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF57 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,51,74~78,88~89,113~114
    2BA:A:202 9,29~32,47~49,94,99,108~109
    14 6n5s:A
    (2.802Å)
    		 123 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF70 RF00379 Homo
    sapiens
    9606    		 N/A
    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:202 5~8,47,70~74,84~85,109~111
    2BA:A:203 9,25~28,43~46,90,95,104~105
    15 6n5t:A
    (2.787Å)
    		 126 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF7C RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    s16

    1264

    1367

    s55

    354

    s50

    M065_0.6

    M153_0.6

    467    		 Assembly1
    2BA:A:201 5~7,49,72~76,86~87,112
    2BA:A:202 9,27~30,45~48,92~93,97,106~107
    16 6wtl:A
    (2.85Å)
    		 124 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF5D RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,47,70~74,84~85,110
    2BA:A:202 9,25~28,43~46,90,95,104~105
    17 6wtr:A
    (3.082Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF84 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    2BA:A:201 5~8,48,71~75,85~86,110~112
    2BA:A:202 9,26~29,44~46,91,96,105~106
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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