SEQ2FUN

FURNA
Download all results in tab-seperated text for 25 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 3slq:A
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    5GP:A:120 30~31,55,57,59,80~82
    2 3slq:B
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    5GP:B:120 30~31,57~59,80~83
    3 4x4n:B
    (2.953Å)
    		 32 N/A URS000080E2D0 N/A Homo
    sapiens
    9606    		 25640237
    1124    		 Assembly1
    5GP:B:102 14,16~17,19
    4 4x4v:B
    (2.6Å)
    		 33 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237
    1335

    1124

    s49

    1333    		 Assembly1
    5GP:B:502 14,16~17,19
    5GP:B:503 15~16
    5 4x4v:D
    (2.6Å)
    		 26 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237 Assembly2
    5GP:D:101 16~17
    6 5dhc:A
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    5GP:A:104 2~3
    5GP:A:105 1~2
    7 5dhc:B
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    5GP:B:105 2~3
    5GP:B:106 1~2
    8 5dhc:C
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    5GP:C:105 2~3
    5GP:C:106 1~2
    9 5dhc:D
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    5GP:D:105 2~3
    5GP:D:106 1~2
    10 6gaw:BA
    (3.2Å)
    		 1549 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 30089917 Assembly1
    5GP:BA:3203 1235,1245~1246
    5GP:BA:3204 366~367,430,598
    11 6gb2:BA
    (3.2Å)
    		 1549 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 30089917 Assembly1
    5GP:BA:3203 1235,1245~1246
    5GP:BA:3204 366~367,430,598
    12 6ydp:BA
    (3.0Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    GO:0005840 (C) ribosome    		 URS0001A24B67 RF02541
    RF00177
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005    		 Sus
    scrofa
    9823    		 32602580 Assembly1
    5GP:BA:15906 1235,1245~1246,1255
    5GP:BA:15907 366~367,430,598
    13 6ydw:BA
    (4.2Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    GO:0005840 (C) ribosome    		 URS0001A24B67 RF02541
    RF00177
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005    		 Sus
    scrofa
    9823    		 32602580 Assembly1
    5GP:BA:15901 187,366~368,598
    14 7nqh:BA
    (3.5Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1791 1235,1245~1246,1255
    5GP:BA:1792 187,366~367,598
    15 7nql:BA
    (3.4Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:3211 1235,1245,1255
    5GP:BA:3212 187,366~367,598
    16 7nsh:BA
    (3.2Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:3206 1235,1245~1246,1255
    5GP:BA:3207 366~367,430,598
    17 7nsi:BA
    (4.6Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1792 187,366~367,598
    18 7nsj:BA
    (3.9Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1791 187,366~367,598
    19 7tql:3
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 35732735
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    5GP:3:101 33~34
    20 8vvp:UA
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bos
    taurus
    9913    		 N/A Assembly1
    5GP:UA:101 2,72~73
    21 8vvq:UA
    (2.7Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bos
    taurus
    9913    		 N/A Assembly1
    5GP:UA:101 2,72~73
    22 8vvr:UA
    (3.1Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bos
    taurus
    9913    		 N/A Assembly1
    5GP:UA:101 2,72~73
    23 8vvs:UA
    (3.1Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bos
    taurus
    9913    		 N/A Assembly1
    5GP:UA:101 2,72~73
    24 9dei:R
    (2.99Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Trypanosoma
    brucei
    5691    		 N/A Assembly1
    5GP:R:101 2,73,77
    25 9mqs:A
    (3.1Å)
    		 243 GO:0000372 (P) Group I intron splicing N/A RF00028 Candida
    albicans
    5476    		 40339124 Assembly1
    5GP:A:409 151~152,154,315
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.