SEQ2FUN

FURNA
Download all results in tab-seperated text for 19 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 3slq:A
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    5GP:A:120 30~31,55,57,59,80~82
    2 3slq:B
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    5GP:B:120 30~31,57~59,80~83
    3 4x4n:B
    (2.953Å)
    		 32 N/A URS000080E2D0 N/A Homo
    sapiens
    9606    		 25640237
    1124    		 Assembly1
    5GP:B:102 14,16~17,19
    4 4x4v:B
    (2.6Å)
    		 33 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237
    1335

    1124

    s49

    1333    		 Assembly1
    5GP:B:502 14,16~17,19
    5GP:B:503 15~16
    5 4x4v:D
    (2.6Å)
    		 26 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237 Assembly2
    5GP:D:101 16~17
    6 5dhc:A
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    5GP:A:104 2~3
    5GP:A:105 1~2
    7 5dhc:B
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    5GP:B:105 2~3
    5GP:B:106 1~2
    8 5dhc:C
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    5GP:C:105 2~3
    5GP:C:106 1~2
    9 5dhc:D
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    5GP:D:105 2~3
    5GP:D:106 1~2
    10 6gaw:BA
    (3.2Å)
    		 1549 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 30089917 Assembly1
    5GP:BA:3203 1235,1245~1246
    5GP:BA:3204 366~367,430,598
    11 6gb2:BA
    (3.2Å)
    		 1549 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 30089917 Assembly1
    5GP:BA:3203 1235,1245~1246
    5GP:BA:3204 366~367,430,598
    12 6ydp:BA
    (3.0Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    GO:0005840 (C) ribosome    		 URS0001A24B67 RF02541
    RF02540
    RF00177
    RF01959
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005    		 Sus
    scrofa
    9823    		 32602580 Assembly1
    5GP:BA:15906 1235,1245~1246,1255
    5GP:BA:15907 366~367,430,598
    13 6ydw:BA
    (4.2Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    GO:0005840 (C) ribosome    		 URS0001A24B67 RF02541
    RF02540
    RF00177
    RF01959
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005
    RF00005    		 Sus
    scrofa
    9823    		 32602580 Assembly1
    5GP:BA:15901 187,366~368,598
    14 7nqh:BA
    (3.5Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1791 1235,1245~1246,1255
    5GP:BA:1792 187,366~367,598
    15 7nql:BA
    (3.4Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:3211 1235,1245,1255
    5GP:BA:3212 187,366~367,598
    16 7nsh:BA
    (3.2Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:3206 1235,1245~1246,1255
    5GP:BA:3207 366~367,430,598
    17 7nsi:BA
    (4.6Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1792 187,366~367,598
    18 7nsj:BA
    (3.9Å)
    		 1544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000022E3AE RF02541
    RF02540    		 Sus
    scrofa
    9823    		 33878294 Assembly1
    5GP:BA:1791 187,366~367,598
    19 7tql:3
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 35732735
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    5GP:3:101 33~34
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.