FURNA

Download all results in tab-seperated text for 6 RNAs.

Click the entry in the '#' column to view structure details of that RNA chain.

Hover over PDB to view the title of the structure.

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Hover over PubMed to view title of the PubMed publications.

Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	ATtRACT motif	Ligand & binding nucleotides
1	8ifb:A (2.43Å)	1519	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF02542 RF01960	Escherichia coli 562	38227611		Assembly1 84D:A:1738 1404~1405,1407~1408,1491,1493~ 1495 84D:A:1739 128,132~133,229~231 84D:A:1740 31,48~49,116,306 84D:A:1741 23~24,557~559 84D:A:1742 665~669,735~736
2	8ifb:a (2.43Å)	2753	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02541	Escherichia coli 562	38227611		Assembly1 84D:a:3255 1906~1907,1920~1923 84D:a:3256 2647,2670~2673 84D:a:3257 2521,2523~2525,2535~2536,2541 84D:a:3258 1769~1770,1978~1980,1982~1983 84D:a:3259 829,2248,2259~2260 84D:a:3260 980,1003,1025,1135~1139,1144 84D:a:3261 1443~1445,1464~1466 84D:a:3262 2399~2401,2413~2415
3	8ifd:1A (2.59Å)	3717	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000E60B81	RF02543	Homo sapiens 9606	38227611	M054_0.6 1306 769 706 1303 762 42 1148 1149 764 870 167 21 1079 930 1029 1075 1072 1073 s77 1071 819 1373 938 546 s52 s51 s50 931 813 936 s59 995 994 595 1314 991 1312 1311 1028 1150 673 123 124 125 1068 s72 1060 s100 s102 52 533 M227_0.6 1384 375 926 822 1128 988 1321 708 704 705 1328 707 1124 987 1126 703 M077_0.6 1237 83 1181 797 796 795 836 837 791 790 838 1334 s70 1016 1017 1393 610 1012 1013 1236 M290_0.6 763 1231 1232 1233 1335 s17 M109_0.6 1336 1331 1239 1333 589 776 M273_0.6 s99 1389 902 821 900 901 906 905 33 s48 853 924 M044_0.6 1245 s62 s96 1227 883 M035_0.6 1223 M156_0.6 604 M320_0.6 1347 60 s81 M349_0.6 1083 175 1026 100 s61 977 976 974 852 970 M154_0.6 884 s55 979 M153_0.6 183 1238 185 1375 1036 503 1034 1035 1212 M102_0.6 1211 1216 1042 986 467 M148_0.6 1354 M103_0.6 169 91 1127 162 M070_0.6 M272_0.6 M020_0.6 M050_0.6 1187 1182 815 1037 727 M347_0.6 722 935 M086_0.6 1164 1165 1166 606 886 156 748 749 608 M061_0.6 958 1055 878 879 1059 953 952 872 954 957 1107 1352 774 1215 M104_0.6 1173 770 773 1183 1271 1272 1273 779 778 1178 M151_0.6 78 1285 M083_0.6 1041 1040 1043 1045 1044 1288 354 688 1360 684 800 1368	Assembly1 84D:1A:5101 4991~4992,4994,5054 84D:1A:5102 2834,4978,5049 84D:1A:5103 4641,4643~4644,4652~4653 84D:1A:5104 2843,4632~4633,4660~4663 84D:1A:5105 406~407,409~410,2306,2330~2331 84D:1A:5106 380~384 84D:1A:5107 2788,2799~2801 84D:1A:5108 713~714,949~952 84D:1A:5109 4493~4495,4512~4514 84D:1A:5110 2853~2854,3831~3832,4499,4529~ 4530,4551~4552 84D:1A:5111 3912~3913,3915,4191,4198 84D:1A:5112 3874~3875,3878,4402 84D:1A:5113 1934~1936,1938~1939 84D:1A:5114 3696~3697 84D:1A:5115 1931,1933,1941~1942,2036~2037, 2039~2040 84D:1A:5116 3705~3706,3922,4182 84D:1A:5117 4299,4309,4367~4368 84D:1A:5118 4310,4330,4368 84D:1A:5119 4275~4277 84D:1A:5120 1733,1795~1797 84D:1A:5121 4322,4325~4327
4	8ifd:1B (2.59Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000F9D45	RF00001	Homo sapiens 9606	38227611	931 1290 s51 879	Assembly1 84D:1A:5113 87~88
5	8ifd:1C (2.59Å)	156	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000005270	RF00002 RF02540	Homo sapiens 9606	38227611	1227 592 s24 993 1215 1352 s37 1238 1178 M085_0.6 1389 1360 589 375 M106_0.6	Assembly1 84D:1A:5106 21~22
6	8ifd:2m (2.59Å)	1742	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000868520	RF01960 RF02542 RF01959 RF00177	Homo sapiens 9606	38227611	1303 1263 872 1149 1267 764 954 957 692 1079 1075 1072 1073 819 346 546 1378 930 936 935 M296_0.6 1314 M141_0.6 1068 s72 M147_0.6 1060 s102 1384 1386 M016_0.6 s48 926 822 1128 1323 988 595 1327 707 986 796 836 762 790 838 1124 1017 1393 1392 1390 1236 1335 1334 M109_0.6 1238 M273_0.6 s14 445 s99 1311 105 902 900 905 821 788 1333 924 1244 s62 s96 M074_0.6 335 60 1167 977 976 974 852 970 509 1037 1035 1213 756 639 M148_0.6 786 1355 M065_0.6 93 167 M070_0.6 813 M050_0.6 1188 1022 1187 1029 815 727 722 883 604 606 884 749 779 608 996 M037_0.6 1055 878 1059 952 1195 43 870 1380 325 758 770 610 1274 1042 M127_0.6 s24 s61 804	Assembly1 84D:1A:5114 1038~1039,1846 84D:2m:1901 1727,1729,1802,1804 84D:2m:1902 50,161,461,470 84D:2m:1903 932,934~935,1004

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Reference:

Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.