SEQ2FUN

FURNA
Download all results in tab-seperated text for 13 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 5ndj:13
    (3.15Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly1
    8UZ:13:2201 2036,2114,2116~2118
    8UZ:13:2202 1291~1293,1369~1371
    2 5ndj:14
    (3.15Å)
    		 2909 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868533 RF02541 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly2
    8UZ:14:3002 1931~1932,1934~1935,1945~1948
    8UZ:14:3003 2528~2529,2561~2562,2582,2584~
    2585
    8UZ:14:3004 2643~2644,2647~2649,2792,2797~
    2798
    8UZ:14:3005 666,672~675
    8UZ:14:3006 1753,2013~2014
    3 5ndj:1G
    (3.15Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly2
    8UZ:1G:2201 2036,2114,2117~2118
    8UZ:1G:2202 1290~1293,1369~1372
    8UZ:14:3006 2094~2095
    4 5ndj:1H
    (3.15Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868533 RF02541 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly1
    8UZ:1H:3002 1931~1932,1934,1946~1948
    8UZ:1H:3003 2528~2529,2561,2584~2585
    8UZ:1H:3004 2643~2644,2648~2649,2792,2797~
    2798
    8UZ:1H:3005 665~666,672,674~675,678
    5 5ndk:13
    (2.95Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly1
    8UZ:13:2201 2036,2114,2116~2118
    8UZ:13:2202 1291~1293,1369~1371
    6 5ndk:1G
    (2.95Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177 Thermus
    thermophilus
    HB8
    300852    		 29208708 Assembly2
    8UZ:1G:2201 2036,2114,2117~2118
    8UZ:1G:2202 1290~1293,1369~1372
    7 5ndw:1
    (3.7Å)
    		 3090 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 29208708 Assembly2
    8UZ:1:3886 182~184,227~228,231~232
    8UZ:1:3887 1667~1668,1775~1778
    8UZ:1:3888 3071~3072,3337~3340,3361
    8UZ:1:3889 2997~2998,3148,3150,3161,3396
    8UZ:1:3890 2191~2193
    8UZ:1:3891 917,924,2139,2955
    8UZ:1:3892 1210~1213,1288
    8UZ:1:3893 2248,2250,2273,2307,2310~2311,
    2962
    8UZ:1:3894 1555~1556,2170~2171,2519~2520
    8UZ:1:3895 3191~3192,3197,3199
    8UZ:4:220 416~417
    8 5ndw:2
    (3.7Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 29208708 Assembly2
    8UZ:1:3890 981~982
    8UZ:2:2029 42,430~432,434,437~438
    8UZ:2:2030 38~39,463~467
    8UZ:2:2031 1645,1749
    9 5ndw:3
    (3.7Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 29208708 Assembly2
    8UZ:3:214 80~83,94~96
    10 5ndw:4
    (3.7Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 29208708
    441    		 Assembly2
    8UZ:4:220 3~4
    11 5ndw:5
    (3.7Å)
    		 3080 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 29208708 Assembly1
    8UZ:5:3850 1210,1212~1213,1288
    8UZ:5:3851 1667~1668,1775~1778
    8UZ:5:3852 1663,1779~1780,1783~1785
    8UZ:5:3853 917,924,2139~2140,2810,2955
    8UZ:5:3854 2158~2159,2176~2177
    8UZ:5:3855 2433~2434,2594~2595
    8UZ:5:3856 3192,3197,3199
    8UZ:5:3857 3071,3337,3339,3360~3361
    12 5ndw:6
    (3.7Å)
    		 1736 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 29208708 Assembly1
    8UZ:6:2061 38~39,464~465,467
    13 5ndw:7
    (3.7Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 29208708 Assembly1
    8UZ:7:209 80~83,96
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.