SEQ2FUN

FURNA
Download all results in tab-seperated text for 44 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 2b57:A
    (2.15Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS000080E0EB RF00167 Bacillus
    subtilis
    1423    		 16650860 Assembly1
    ACT:A:92 32~33,38
    2 2ees:A
    (1.75Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DE3D RF00167 Bacillus
    subtilis
    1423    		 17960911 Assembly1
    ACT:A:96 32~33,38~39,66
    3 2eet:A
    (1.95Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDBB RF00167 Bacillus
    subtilis
    1423    		 17960911 Assembly1
    ACT:A:96 32~33,38~39
    4 2eeu:A
    (1.95Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080E2FB RF00167 Bacillus
    subtilis
    1423    		 17960911 Assembly1
    ACT:A:96 32~33,38~39
    5 2eev:A
    (1.95Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFC6 RF00167 Bacillus
    subtilis
    1423    		 17960911 Assembly1
    ACT:A:95 32~33,38
    6 2eew:A
    (2.25Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080E008 RF00167 Bacillus
    subtilis
    1423    		 17960911 Assembly1
    ACT:A:96 32~33,38,66
    7 2g9c:A
    (1.7Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 17076468 Assembly1
    ACT:A:96 32~33,38~39
    8 2xnw:A
    (1.5Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 21439477 Assembly1
    ACT:A:1088 32~33,38~39,66
    9 2xnz:A
    (1.59Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 21439477 Assembly1
    ACT:A:1087 32~33,38~39,66
    10 2xo0:A
    (1.7Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 21439477 Assembly1
    ACT:A:102 32~33,38~39,66
    11 2xo1:A
    (1.6Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS00008FED1E RF00167 Bacillus
    subtilis
    1423    		 21439477 Assembly1
    ACT:A:1089 32~33,38~39
    12 3ds7:A
    (1.85Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080E322 RF00167 synthetic
    construct
    32630    		 19007790 Assembly1
    ACT:A:96 32~33,38~39,66
    13 3ds7:B
    (1.85Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080E322 RF00167 synthetic
    construct
    32630    		 19007790 Assembly2
    ACT:B:296 232~233,238~239
    14 3fo4:A
    (1.9Å)
    		 63 GO:0009113 (P) purine nucleobase biosy... URS000080E134 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    15 3fo6:A
    (1.9Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DD54 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    16 3g4m:A
    (2.4Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38,66
    17 3gao:A
    (1.9Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    18 3ger:A
    (1.7Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39,66
    19 3ges:A
    (2.15Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    20 3gog:A
    (2.1Å)
    		 65 GO:0009113 (P) purine nucleobase biosy... URS000080DDBB RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    21 3got:A
    (1.95Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFC3 RF00167 Bacillus
    subtilis
    1423    		 19523903 Assembly1
    ACT:A:96 32~33,38~39
    22 3r9w:B
    (2.05Å)
    		 34 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E021 RF01960
    RF01959    		 synthetic
    construct
    32630    		 21646538
    19706445
    10411886    		 Assembly1
    ACT:B:504 1531~1532
    23 3sj2:B
    (1.36Å)
    		 17 N/A URS000080DE63 N/A synthetic
    construct
    32630    		 21766409 Assembly1
    ACT:A:21 12~13
    24 4fe5:B
    (1.32Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 15549109 Assembly1
    ACT:B:102 32~33,38~39,66
    ACT:B:103 23,25~26
    25 4fej:B
    (1.5Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080E1C2 RF00167 Bacillus
    subtilis
    1423    		 23485418 Assembly1
    ACT:B:102 32~33,38~39,66
    ACT:B:103 25~26
    26 4fel:B
    (1.6Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DF61 RF00167 Bacillus
    subtilis
    1423    		 23485418 Assembly1
    ACT:B:102 32~33,38~39,66
    27 4fen:B
    (1.35Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DD34 RF00167 Bacillus
    subtilis
    1423    		 23485418 Assembly1
    ACT:B:102 32~33,38~39,66
    28 4k50:B
    (2.93Å)
    		 33 N/A URS000080DF72 N/A synthetic
    construct
    32630    		 23667424 Assembly1
    ACT:B:701 601~602
    29 4k50:F
    (2.93Å)
    		 31 N/A URS000080DF72 N/A synthetic
    construct
    32630    		 23667424 Assembly2
    ACT:F:701 601~602
    30 4k50:J
    (2.93Å)
    		 33 N/A URS000080DF72 N/A synthetic
    construct
    32630    		 23667424 Assembly3
    ACT:J:701 601~602
    31 4k50:N
    (2.93Å)
    		 32 N/A URS000080DF72 N/A synthetic
    construct
    32630    		 23667424 Assembly4
    ACT:M:503 601~602
    32 5aox:C
    (2.04Å)
    		 87 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS00008FED21 RF00017 synthetic
    construct
    32630    		 26585389 Assembly1
    ACT:C:1001 24~25
    33 5aox:F
    (2.04Å)
    		 87 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS00008FED21 RF00017 synthetic
    construct
    32630    		 26585389 Assembly2
    ACT:F:1001 24~25
    34 5b2r:A
    (2.0Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    ACT:A:107 66~67
    35 5b2s:A
    (2.2Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    ACT:A:107 66~67
    36 5b2t:A
    (2.2Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    ACT:A:108 66~67
    37 5m0i:E
    (2.41Å)
    		 28 N/A URS0000B21DFB N/A Saccharomyces
    cerevisiae
    4932    		 28092367 Assembly1
    ACT:E:104 13,15
    38 5nzd:A
    (2.007Å)
    		 41 GO:0010468 (P) regulation of gene expr... URS0000CBFF2B RF01763 Thermobifida
    fusca
    2021    		 28988949 Assembly1
    ACT:A:108 6~7,16~17
    39 5nzd:B
    (2.007Å)
    		 41 GO:0010468 (P) regulation of gene expr... URS0000CBFF2B RF01763 Thermobifida
    fusca
    2021    		 28988949 Assembly2
    ACT:B:105 6~7,17
    40 6dlr:A
    (2.656Å)
    		 107 GO:0010468 (P) regulation of gene expr... URS0000E60BB3 RF00442 Syntrophothermus
    lipocalidus
    DSM
    12680
    643648    		 30120360 Assembly1
    ACT:A:223 32~33
    41 6ubu:B
    (1.6Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 32414072 Assembly1
    ACT:B:108 32~33,38~39,66
    42 6uc8:B
    (1.898Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 32414072 Assembly1
    ACT:B:110 32~33,38~39
    43 6uc9:B
    (1.941Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DDA1 RF00167 Bacillus
    subtilis
    1423    		 32414072 Assembly1
    ACT:B:108 32~33,38~39,66
    44 7ozq:G
    (1.91Å)
    		 32 N/A URS00023119B0 N/A Saccharomyces
    cerevisiae
    4932    		 34475498 Assembly4
    ACT:G:101 25~26
    << < 1 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.