SEQ2FUN

FURNA
Download all results in tab-seperated text for 22 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1yrj:A
    (2.7Å)
    		 23 N/A URS000080E29E N/A synthetic
    construct
    32630    		 15849690 Assembly1
    AM2:A:151 16~20
    AM2:B:150 4~5,8
    2 1yrj:B
    (2.7Å)
    		 22 N/A URS000080E29E N/A synthetic
    construct
    32630    		 15849690 Assembly1
    AM2:A:151 31~33
    AM2:B:150 39~43
    3 2g5k:A
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 16596680 Assembly1
    AM2:A:102 4~6,8
    AM2:B:101 15,17,19
    4 2g5k:B
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 16596680 Assembly1
    AM2:A:102 38,40,42
    AM2:B:101 27~29,31
    5 2m4q:1

    		 27 N/A URS000080DE29 N/A synthetic
    construct
    32630    		 23416053 Assembly1
    AM2:1:101 7,20~23
    6 2oe5:A
    (1.51Å)
    		 16 N/A URS000080E0E3 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    AM2:B:101 1408,1410~1413
    7 2oe5:B
    (1.51Å)
    		 17 N/A URS000080E0F2 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    AM2:B:101 84~86,1488~1489
    8 2oe8:A
    (1.8Å)
    		 16 N/A URS000080DDFB N/A synthetic
    construct
    32630    		 17258916 Assembly1
    AM2:B:101 1408,1410~1413
    9 2oe8:B
    (1.8Å)
    		 17 N/A URS000080E1C5 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    AM2:B:101 83~86,1488
    10 4aqy:A
    (3.5Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 22699498 Assembly1
    AM2:A:3001 1408~1409,1491,1493~1495
    AM2:A:3002 818,855,868,871
    AM2:A:3003 665~669,732~733
    AM2:A:3004 40~42,393~395,397,484,486
    AM2:A:3005 244~245,893~894,1416~1417,1478
    ~1479,1482
    11 4k31:B
    (1.415Å)
    		 22 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    AM2:B:101 4~6,8
    AM2:B:102 9~11
    AM2:C:101 8~9
    AM2:C:102 17,19
    12 4k31:C
    (1.415Å)
    		 22 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    AM2:B:101 17,19
    AM2:B:102 8~9
    AM2:C:101 9~11
    AM2:C:102 4~6,8
    13 7pjs:a
    (2.35Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 N/A Assembly1
    AM2:a:1682 1408,1491,1493~1495
    AM2:a:1684 1425,1429~1431,1471~1473
    AM2:a:1685 833~838,846,850
    AM2:a:1689 818~820,855,868,871
    14 7pjt:a
    (6.0Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 34635670 Assembly1
    AM2:a:2001 1491,1493~1494
    15 7pju:a
    (9.5Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 34635670 Assembly1
    AM2:a:2001 1408,1491~1495
    16 7pjv:a
    (3.1Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 34635670 Assembly1
    AM2:a:1648 1408,1491~1495
    AM2:a:1652 833~835,837,846,848,850
    AM2:a:1657 818,820,854~856,868~869,871
    17 7pjw:a
    (4.0Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 34635670 Assembly1
    AM2:a:2001 1408~1409,1491,1494
    18 7pjx:a
    (6.5Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 34635670 Assembly1
    AM2:a:2001 1408,1491,1493~1495
    19 7pjy:a
    (3.1Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 34635670 Assembly1
    AM2:a:1620 1408,1491,1493~1495
    AM2:a:1626 833~835,850~851
    AM2:a:1628 1425,1429,1471~1475
    AM2:a:1636 818,820,855~856,868,871
    20 7pjz:a
    (6.0Å)
    		 1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 34635670 Assembly1
    AM2:a:2001 1408,1491~1495
    21 8cgd:a
    (1.98Å)
    		 2748 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    AM2:a:3003 591~593,660,662~665
    22 8cgr:A
    (2.12Å)
    		 1060 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268143B RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    AM2:A:1603 1408~1409,1491~1495
    AM2:A:1604 818~819,855,868~869,871
    AM2:A:1605 1425,1429~1430,1471~1473
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.