SEQ2FUN

FURNA
Download all results in tab-seperated text for 40 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1aju:A

    		 30 N/A URS000080E090 N/A synthetic
    construct
    32630    		 9126842 Assembly1
    ARG:A:47 22~23,26,37~38
    2 1akx:A

    		 30 N/A URS000080E090 N/A synthetic
    construct
    32630    		 9126842 Assembly1
    ARG:A:47 22~23,26,37
    3 1arj:N

    		 29 N/A URS000080E14B N/A synthetic
    construct
    32630    		 7563092 Assembly1
    ARG:N:1 22~23,26,37
    4 1koc:A

    		 11 N/A URS000080E0C2 N/A synthetic
    construct
    32630    		 8650546 Assembly1
    ARG:B:1 12~13
    5 1koc:B

    		 14 N/A URS000080E291 N/A synthetic
    construct
    32630    		 8650546 Assembly1
    ARG:B:1 30~31,33,35
    6 2kx8:A

    		 42 N/A URS000080E360 RF00100 Homo
    sapiens
    9606    		 20816986
    335

    s100

    991

    1368    		 Assembly1
    ARG:A:392 303,319~320
    7 2l8h:A

    		 29 N/A URS000080E14B N/A synthetic
    construct
    32630    		 21763501 Assembly1
    ARG:A:1 21~22,35~36
    8 4y4o:1B
    (2.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    ARG:1B:230 80~82,93~94
    9 4zer:1B
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF2 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly1
    ARG:1B:229 80~82,93,96~97
    10 5v8i:1B
    (3.25Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF2 RF00001 Thermus
    thermophilus
    HB27
    262724    		 N/A Assembly1
    ARG:1B:1001 80~82,93
    11 6cfk:1A
    (2.7Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 29410130 Assembly1
    ARG:1F:314 638~639
    12 6cfk:1B
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 29410130 Assembly1
    ARG:1B:228 80~82,94,96
    13 6cfl:1A
    (2.6Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 29410130 Assembly1
    ARG:1F:311 638~639
    14 6cfl:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 29410130 Assembly1
    ARG:1B:232 80~82,97
    15 6czr:1A
    (3.14Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    ARG:1A:3799 637~638
    16 6czr:1B
    (3.14Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF2 RF00001 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    ARG:1B:223 80~82
    17 6xhx:1A
    (2.55Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly1
    ARG:1F:319 614A,614B
    18 6xhx:1B
    (2.55Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly1
    ARG:1B:233 80~82,96
    19 7md7:1A
    (2.8Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 33916420 Assembly1
    ARG:1F:316 614A,614B
    20 7md7:1B
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 33916420 Assembly1
    ARG:1B:228 80~82,96~97
    21 7rqa:1B
    (2.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1B:231 80~82,94
    22 7rqb:1B
    (2.45Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1B:231 80~82,94
    23 7rqc:1A
    (2.5Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1F:317 614A,614B
    24 7rqc:1B
    (2.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1B:231 80~82,95~96
    25 7rqe:1A
    (2.4Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1A:4018 614A,614B,614C
    26 7rqe:1B
    (2.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    ARG:1B:231 80~82,96~97
    27 8fc1:1B
    (2.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:230 80~82,93
    28 8fc2:1A
    (2.5Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1F:318 614A,614B
    29 8fc2:1B
    (2.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:230 80~82,93,96
    30 8fc3:1A
    (2.6Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1F:321 614A,614B
    31 8fc3:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:230 80~82,93,96
    32 8fc4:1B
    (2.45Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:230 80~82,93,96
    33 8fc5:1B
    (2.65Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:230 80~82,94,96~97
    34 8fc6:1B
    (2.35Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ARG:1B:231 80~82,93~94,96
    35 8t8b:1B
    (2.65Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37433044 Assembly1
    ARG:1B:231 80~82,93,96
    36 8t8c:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 37433044 Assembly1
    ARG:1B:230 80~82,93,96~97
    37 8vtw:1A
    (2.35Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 39039256 Assembly1
    ARG:1A:3998 614A,614B
    38 8vtw:1B
    (2.35Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 39039256 Assembly1
    ARG:1B:232 80~82,94,96~97
    39 8vty:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 39039256 Assembly1
    ARG:1B:230 80~82,94,96~97
    40 9dfe:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 39372947 Assembly1
    ARG:1B:232 80~82,93~94,96
    << < 1 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.