SEQ2FUN

FURNA
Download all results in tab-seperated text for 11 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 4gma:Z
    (3.94Å)
    		 192 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 marine
    metagenome
    408172    		 23064232 Assembly1
    B1Z:Z:301 49~51,74~75,82~83,117,161~162,
    164,166,193~194
    2 4gxy:A
    (3.05Å)
    		 163 GO:0031419 (F) cobalamin binding URS000080DFBC RF00174 Symbiobacterium
    thermophilum
    2734    		 23064646 Assembly1
    B1Z:A:301 41~43,65~66,72~73,109,156~157,
    161
    B1Z:A:302 78,149~150
    3 6vmy:A
    (3.25Å)
    		 148 GO:0031419 (F) cobalamin binding URS0001A24B44 RF00174 Bacillus
    subtilis
    1423    		 32544228 Assembly1
    B1Z:A:412 245~247,268,276,306,308,310
    4 8sa2:A
    (3.1Å)
    		 210 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 49~51,74~75,82~83,161~162,164,
    166
    B1Z:B:301 193~194
    5 8sa2:B
    (3.1Å)
    		 210 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 193~194
    B1Z:B:301 49~51,74~75,82~83,161~162,164,
    166
    6 8sa3:A
    (3.0Å)
    		 210 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 49~51,74~75,82~83,117,161~162,
    164,166
    7 8sa3:B
    (3.0Å)
    		 210 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:B:301 49~51,74~75,82~83,161~162,164,
    166
    8 8sa4:A
    (3.1Å)
    		 189 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 49~51,74,83,161~162,164,166
    9 8sa4:B
    (3.1Å)
    		 47 GO:0031419 (F) cobalamin binding URS000080E34D N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 193~194
    10 8sa5:A
    (3.5Å)
    		 210 GO:0031419 (F) cobalamin binding URS000080E34D RF00174 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:A:301 49~51,74~75,83,161~162,164,166
    B1Z:B:301 194~195
    11 8sa5:B
    (3.5Å)
    		 135 GO:0031419 (F) cobalamin binding
    GO:0010468 (P) regulation of gene expr...
    GO:0045893 (P) positive regulation of ...
    GO:0046336 (P) ethanolamine catabolic ...    		 URS000080E34D RF00174
    RF01689
    RF01482    		 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 37534568 Assembly1
    B1Z:B:301 48~51,74,82~83,161~162,164~166
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.