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FURNA
Download all results in tab-seperated text for 51 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1kd4:A
    (1.85Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    BA:A:502 2~3
    2 1kd4:B
    (1.85Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    BA:B:501 2~3
    3 1nta:A
    (2.9Å)
    		 22 N/A URS000080DE50 N/A synthetic
    construct
    32630    		 12618190 Assembly1
    BA:B:1 10~11
    4 1nta:B
    (2.9Å)
    		 18 N/A URS000080DFEE N/A synthetic
    construct
    32630    		 12618190 Assembly1
    BA:B:3 114~115
    5 1u9s:A
    (2.9Å)
    		 155 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E141 RF00010 Thermus
    thermophilus
    274    		 15459389 Assembly1
    BA:A:2 192,218
    BA:A:7 219~220
    BA:A:10 137,159
    BA:A:11 98,100
    BA:A:12 79,110
    BA:A:16 141,158
    BA:A:19 182~183
    6 2hol:A
    (2.9Å)
    		 79 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    BA:A:107 60,78
    BA:A:108 63~64
    BA:A:114 40,43
    7 2ydh:A
    (2.9Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080E1B3 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 21893284 Assembly1
    BA:A:1095 26~28
    BA:A:1097 10,64
    8 3f2w:X
    (3.45Å)
    		 109 GO:0010181 (F) FMN binding URS000080DE72 RF00050 Fusobacterium
    nucleatum
    851    		 19169240 Assembly1
    BA:X:402 33,62
    BA:X:404 9,101~102
    BA:X:413 35~36,40
    BA:X:415 51~52
    BA:X:416 88~89,92
    9 3iqn:A
    (2.7Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080E279 RF00162 synthetic
    construct
    32630    		 20637415 Assembly1
    BA:A:203 10,64
    10 3iqp:A
    (2.9Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080DF1C RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 20637415 Assembly1
    BA:A:303 85~86
    BA:A:305 64,67
    BA:A:306 27~28
    11 3iqr:A
    (2.55Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080DF1C RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 20637415 Assembly1
    BA:A:204 64,67
    BA:A:206 10,63~64
    BA:A:208 46,55
    12 3oxj:A
    (3.2Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly1
    BA:A:204 79~80
    BA:A:205 22,75
    BA:A:211 18~19
    BA:A:214 69~71
    BA:A:222 8,80
    13 3oxj:B
    (3.2Å)
    		 87 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly2
    BA:B:208 79~80
    BA:B:216 17,20
    BA:B:218 60~61
    BA:B:223 8,80
    14 4aob:A
    (2.95Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080DF6B RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 22539525 Assembly1
    BA:A:1096 81~82
    BA:A:1097 64,67
    BA:A:1098 26~27
    BA:A:1099 15~16
    BA:A:1102 46,55
    BA:A:1107 11,64
    15 4b5r:A
    (2.95Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080DFE5 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 23325110 Assembly1
    BA:A:1096 27~28
    BA:A:1101 11,64
    BA:A:1104 15~16
    16 4e8v:A
    (3.995Å)
    		 389 GO:0000373 (P) Group II intron splicing URS000080DE44 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    BA:A:415 96~97
    BA:A:416 266~267
    BA:A:417 67~68
    BA:A:421 333,336
    BA:A:425 3~5,376
    BA:A:427 358,377
    BA:A:436 359,377
    BA:A:438 324~325
    BA:A:442 287~288
    17 4frn:A
    (3.43Å)
    		 102 GO:0010468 (P) regulation of gene expr... URS000080E2FA RF01689 marine
    metagenome
    408172    		 23064232 Assembly1
    BA:A:204 52~53,62
    BA:A:206 5,13~14
    18 4frn:B
    (3.43Å)
    		 102 GO:0010468 (P) regulation of gene expr... URS000080E2FA RF01689 marine
    metagenome
    408172    		 23064232 Assembly2
    BA:B:203 52~53,62
    BA:B:206 5~6,13~14
    19 4y1i:A
    (2.85Å)
    		 100 N/A URS00008116C1 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    BA:A:213 35~36,61~62
    BA:A:218 77,79
    20 4y1i:B
    (2.85Å)
    		 100 N/A URS00008116C1 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    BA:B:217 35~36,61~62
    21 5fjc:A
    (1.71Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A7634F RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:103 81~82
    BA:A:105 70~71,79~80
    BA:A:106 85~86
    BA:A:110 42~43
    BA:A:112 46,55
    BA:A:113 15~16
    BA:A:114 64,67
    BA:A:115 27~28
    BA:A:116 11,64
    BA:A:117 21~22
    BA:A:122 10~11
    22 5fk1:A
    (2.5Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76377 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1102 64,67
    BA:A:1105 42~43
    23 5fk2:A
    (2.6Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76363 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1098 64,67
    BA:A:1102 42~43
    BA:A:1106 18~19
    24 5fk3:A
    (2.5Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76386 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1106 46,55
    25 5fk4:A
    (2.43Å)
    		 93 GO:0010468 (P) regulation of gene expr... URS0000A7631C RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1096 10~11,62
    BA:A:1097 45,56
    BA:A:1098 85~86
    BA:A:1099 70~71,79~80
    BA:A:1101 81~82
    BA:A:1102 26~28
    BA:A:1103 64,67
    BA:A:1104 11,64
    BA:A:1105 15~16
    BA:A:1106 17~18
    BA:A:1108 42~43
    26 5fk5:A
    (3.315Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76359 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1100 46,55
    BA:A:1101 64,67
    27 5fk6:A
    (2.5Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A7635A RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1097 64,67
    BA:A:1106 10~11
    28 5fkd:A
    (3.0Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A7635B RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1101 64,67
    29 5fke:A
    (2.8Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A7638A RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1099 17~18
    BA:A:1109 10~11
    30 5fkf:A
    (2.8Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76399 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1099 64,67
    31 5fkg:A
    (2.95Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76343 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1097 11,64
    BA:A:1102 46,55
    BA:A:1103 64,67
    32 5fkh:A
    (2.65Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0000A76344 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 27016741 Assembly1
    BA:A:1096 50,52
    BA:A:1097 11,64
    BA:A:1102 64,67
    BA:A:1105 31~32
    33 6cb3:A
    (1.891Å)
    		 99 N/A URS0000D77934 N/A Lactococcus
    lactis
    1358    		 29805037 Assembly1
    BA:A:220 69~70,87
    BA:A:226 35~36,61~62
    34 6cb3:B
    (1.891Å)
    		 99 N/A URS0000D77934 N/A Lactococcus
    lactis
    1358    		 29805037 Assembly1
    BA:B:223 11~13
    BA:B:224 69,87
    BA:B:227 35~36,61~62
    35 6cc1:A
    (2.54Å)
    		 94 GO:0030145 (F) manganese ion binding URS0000D7794E RF00080 Lactococcus
    lactis
    1358    		 29805037 Assembly1
    BA:A:209 61~62
    36 6cc1:B
    (2.54Å)
    		 100 GO:0030145 (F) manganese ion binding URS0000D7794E RF00080 Lactococcus
    lactis
    1358    		 29805037 Assembly1
    BA:B:217 35~36,61~62
    BA:B:218 84~85
    BA:B:220 39~40
    37 6ck5:A
    (2.49Å)
    		 108 GO:0010468 (P) regulation of gene expr... URS0000D7791C RF00442 Thermoanaerobacter
    mathranii
    583357    		 29877798 Assembly1
    BA:A:201 48,97
    BA:A:202 48,92~93
    BA:A:203 48,93
    BA:A:204 49,77
    BA:A:209 103~104
    BA:A:211 23,35
    38 6ck5:B
    (2.49Å)
    		 100 GO:0010468 (P) regulation of gene expr... URS0000D7791C RF00442 Thermoanaerobacter
    mathranii
    583357    		 29877798 Assembly2
    BA:B:202 85~86
    BA:B:204 49,76~77
    BA:B:207 23,35~36
    39 6h0r:A
    (1.73Å)
    		 31 N/A URS0000E60BA2 N/A Rattus
    norvegicus
    10116    		 30971701 Assembly1
    BA:A:101 10~11,20~21
    BA:A:102 4~5,26~27
    BA:A:104 25~27
    40 6h0r:B
    (1.73Å)
    		 31 N/A URS0000E60BA2 N/A Rattus
    norvegicus
    10116    		 30971701 Assembly2
    BA:B:101 10~11,20~21
    BA:B:102 25~27
    BA:B:104 13,17~18
    BA:B:105 19~21
    41 6jxm:B
    (3.32Å)
    		 97 GO:0030533 (F) triplet codon-amino aci... URS0000EEACF5 RF00005 Salasvirus
    phi29
    10756    		 31396619 Assembly1
    BA:B:108 50~51
    BA:B:112 73~74
    BA:B:113 76,79
    BA:B:115 8~9
    42 6m0v:B
    (3.0Å)
    		 71 N/A URS00021ED930 N/A Streptococcus
    thermophilus
    1308    		 N/A Assembly1
    BA:B:101 50,53
    43 6m0x:B
    (2.561Å)
    		 71 N/A URS00021ED930 N/A Streptococcus
    thermophilus
    1308    		 N/A Assembly1
    BA:B:101 50,53
    44 6ymc:A
    (2.0Å)
    		 26 N/A URS00023358E8 N/A Saccharomyces
    cerevisiae
    4932    		 N/A Assembly1
    BA:A:101 3,23~25
    45 6ymc:B
    (2.0Å)
    		 26 N/A URS00023358E8 N/A Saccharomyces
    cerevisiae
    4932    		 N/A Assembly2
    BA:B:102 6~7
    BA:B:104 11~12
    46 7eaf:A
    (2.85Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS0002311979 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 33978763 Assembly1
    BA:A:103 26~28
    BA:A:104 15~16
    47 7ecm:B
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly1
    BA:B:101 7~8
    48 7ecm:C
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly2
    BA:C:101 7~8
    BA:C:102 1~2
    49 7uq6:B
    (2.951Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00023359C4 RF00005 Geobacillus
    kaustophilus
    1462    		 N/A Assembly1
    BA:B:104 8~9
    BA:B:105 9,11
    BA:B:108 7,60
    BA:B:110 65~66
    BA:B:112 1,4
    50 7v9e:A
    (2.3Å)
    		 68 N/A URS00023358F0 N/A Homo
    sapiens
    9606    		 35301479
    167    		 Assembly1
    BA:A:102 36~37
    BA:A:103 30~31
    BA:A:108 52~53
    BA:A:109 41,45
    51 8hb8:A
    (2.3Å)
    		 55 N/A URS00026813BD N/A Streptococcus
    parasanguinis
    1318    		 36840714 Assembly1
    BA:A:103 6~7,15
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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