SEQ2FUN

FURNA
Download all results in tab-seperated text for 19 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1kc8:A
    (3.01Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    BLS:A:9001 2104~2105,2284~2285,2474,2635~
    2637
    BLS:A:9002 2285~2286,2637
    2 4u56:1
    (3.45Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 25209664 Assembly1
    BLS:1:4211 2405~2406,2619~2620,2808,2970
    3 4u56:5
    (3.45Å)
    		 3150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 25209664 Assembly2
    BLS:5:4248 2406,2619~2620,2808,2969~2970
    4 4v9q:AA
    (3.4Å)
    		 2832 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD88 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 23824292 Assembly1
    BLS:AA:4001 2063~2064,2251~2252,2439,2600~
    2601
    5 4v9q:BV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Alcaligenes
    sp.
    512    		 23824292 Assembly1
    BLS:AA:4001 74~76
    6 4v9q:CA
    (3.4Å)
    		 2832 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD88 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 23824292 Assembly2
    BLS:CA:4405 2063~2064,2251~2252,2439,2600~
    2601
    7 4v9q:DV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Alcaligenes
    sp.
    512    		 23824292 Assembly2
    BLS:CA:4405 74~76
    8 6b4v:B
    (3.4Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76375 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 29366636 Assembly1
    BLS:B:9001 2251~2252,2439,2601~2602
    9 6b4v:FB
    (3.4Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76375 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 29366636 Assembly2
    BLS:FB:9001 2063~2064,2251~2252,2439,2601~
    2602
    10 6b4v:IA
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 29366636 Assembly1
    BLS:B:9001 74,76
    11 6b4v:MC
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 29366636 Assembly2
    BLS:FB:9001 74,76
    12 6boh:B
    (3.4Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76375 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 29731232 Assembly1
    BLS:B:9001 2064,2251~2252,2439,2600~2602
    13 6boh:GB
    (3.4Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76375 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 29731232 Assembly2
    BLS:GB:9001 2063~2064,2251~2252,2439,2600~
    2602
    14 6boh:IA
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 29731232 Assembly1
    BLS:B:9001 74,76
    15 7nwg:51
    (3.8Å)
    		 3626 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A0B RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 34157102 Assembly1
    BLS:51:5294 4196~4197,4385,4547
    16 7nwg:q3
    (3.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... URS0002311A0F RF00005 Oryctolagus
    cuniculus
    9986    		 34157102 Assembly1
    BLS:51:5294 75~76
    17 7nwh:5
    (4.1Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311970 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 34157102 Assembly1
    BLS:5:5122 4196,4385,4546~4547
    18 7nwi:5
    (3.13Å)
    		 3662 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A23 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 34157102 Assembly1
    BLS:5:5241 4196,4385,4546~4547
    19 7q0r:1
    (2.67Å)
    		 3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000C2FD9C RF02540
    RF02543    		 Candida
    albicans
    SC5314
    237561    		 35613268 Assembly1
    BLS:1:3403 2383~2384,2591,2780,2941~2942
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.