SEQ2FUN

FURNA
Download all results in tab-seperated text for 9 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1mms:C
    (2.57Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E044 RF02540
    RF02541    		 Thermotoga
    maritima
    2336    		 10338213
    8634289
    6806287
    111931    		 Assembly1
    CD:C:202 1086~1087
    2 1mms:D
    (2.57Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E044 RF02540
    RF02541    		 Thermotoga
    maritima
    2336    		 10338213
    8634289
    6806287
    111931    		 Assembly2
    CD:D:302 1086~1087
    3 1ykq:B
    (3.5Å)
    		 38 N/A URS000080DEAC N/A synthetic
    construct
    32630    		 15723077 Assembly1
    CD:B:242 216~217
    4 488d:A
    (3.1Å)
    		 16 N/A URS000080DF69 N/A synthetic
    construct
    32630    		 10882069 Assembly1
    CD:A:8 90,101
    5 6cb3:A
    (1.891Å)
    		 99 N/A URS0000D77934 N/A Lactococcus
    lactis
    1358    		 29805037 Assembly1
    CD:A:206 9,39~41,44
    CD:A:207 43~44
    CD:A:211 20~21
    6 6cb3:B
    (1.891Å)
    		 99 N/A URS0000D77934 N/A Lactococcus
    lactis
    1358    		 29805037 Assembly1
    CD:B:205 8~10,39,45
    CD:B:207 9,39~41,44~45
    7 6cc1:B
    (2.54Å)
    		 100 GO:0030145 (F) manganese ion binding URS0000D7794E RF00080 Lactococcus
    lactis
    1358    		 29805037 Assembly1
    CD:B:203 39,41,44
    CD:B:204 8,38~39
    CD:B:205 20~21
    8 6cc3:A
    (2.698Å)
    		 100 GO:0030145 (F) manganese ion binding URS0000D77930 RF00080 Lactococcus
    lactis
    1358    		 29805037 Assembly1
    CD:A:201 9,39,41,44
    9 6cc3:B
    (2.698Å)
    		 92 GO:0030145 (F) manganese ion binding URS0000D77930 RF00080 Lactococcus
    lactis
    1358    		 29805037 Assembly2
    CD:B:202 9,39,41,44
    << < 1 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.