SEQ2FUN

FURNA
Download all results in tab-seperated text for 26 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1k01:A
    (3.5Å)
    		 2774 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 11677599 Assembly1
    CLM:A:2884 2430~2431,2483~2485
    2 1nji:A
    (3.0Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    CLM:A:9001 2099~2100,2540,2646
    3 3jbv:b
    (3.32Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 26670735 Assembly1
    CLM:b:9000 2451~2452,2505~2506
    4 4v7t:BA
    (3.1942Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 20876128 Assembly1
    CLM:BA:3136 2061~2062,2451~2452,2503~2506
    5 4v7w:BA
    (3.0Å)
    		 2725 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25D RF02541 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly1
    CLM:BA:3370 2061,2451~2452,2503~2506
    6 4v7w:DA
    (3.0Å)
    		 2725 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25D RF02541 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly2
    CLM:DA:3334 2061,2451~2452,2503~2506
    7 6nd5:1A
    (2.6Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 30733327 Assembly1
    CLM:1A:4102 2061~2062,2451~2452,2503~2506
    8 6nd5:2A
    (2.6Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 30733327 Assembly2
    CLM:2A:3888 2061,2451~2452,2503~2506
    9 7ood:3
    (3.4Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 36171285
    36171285    		 Assembly1
    CLM:3:3026 2068,2460,2511,2513
    10 7p3k:a
    (2.9Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311999 RF02541 Escherichia
    coli
    K-12
    83333    		 34403461 Assembly1
    CLM:a:6206 2061~2062,2451~2452,2503~2504,
    2506
    11 7phb:3
    (4.9Å)
    		 2878 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 36171285 Assembly1
    CLM:3:3001 2068,2460,2511~2512,2514
    12 7rqe:1A
    (2.4Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly1
    CLM:1A:4017 2061,2451~2452,2503~2506
    13 7rqe:2A
    (2.4Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35165455 Assembly2
    CLM:2A:3747 2061,2451~2452,2503~2506
    14 7u2i:1A
    (2.55Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35766409 Assembly1
    CLM:1A:4097 2061~2062,2451~2452,2503~2506
    15 7u2i:2A
    (2.55Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35766409 Assembly2
    CLM:2A:3863 2061,2451~2452,2503~2506
    16 7u2j:1A
    (2.55Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35766409 Assembly1
    CLM:1A:4087 2061,2451~2452,2503~2506
    17 7u2j:2A
    (2.55Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 35766409 Assembly2
    CLM:2w:103 2061,2451~2452,2503~2506
    18 8p7x:3
    (3.03Å)
    		 2893 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 39668257 Assembly1
    CLM:3:3001 2068,2459~2460,2512~2514
    19 8p7y:3
    (3.7Å)
    		 2893 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 39668257 Assembly1
    CLM:3:3001 2068,2459~2460,2511~2514
    20 8p8b:3
    (2.9Å)
    		 2893 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 39668257 Assembly1
    CLM:3:3001 2068,2459~2460,2512~2514
    21 8p8v:3
    (8.7Å)
    		 2893 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 39668257 Assembly1
    CLM:3:3001 2068,2459~2460,2512~2514
    22 8p8w:3
    (8.7Å)
    		 2893 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000AB9B3C RF02541 Mycoplasmoides
    pneumoniae
    M129
    272634    		 39668257 Assembly1
    CLM:3:3001 2068,2459~2460,2511~2514
    23 8s1p:A
    (1.96Å)
    		 2733 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005906D8 RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 38811035 Assembly1
    CLM:A:3032 2090~2091,2480~2481,2532~2535
    24 8vr8:A
    (3.25Å)
    		 2950 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39913204 Assembly1
    CLM:A:3201 2285,2675~2676,2727~2730
    25 8vrl:A
    (3.33Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39913204 Assembly1
    CLM:A:3201 2285,2675~2676,2729
    26 9evs:1
    (3.05Å)
    		 2922 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Brassica
    oleracea
    var.
    botrytis
    3715    		 41330901 Assembly1
    CLM:1:3201 2379~2380,2756~2757,2809~2810
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.