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Download all results in tab-seperated text for 55 RNAs.

Click the entry in the '#' column to view structure details of that RNA chain.

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Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

Sort results by PDB ID Length RNAcentral Resolution

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	ATtRACT motif	Ligand & binding nucleotides
1	3ovb:C (1.95Å)	35	N/A	URS000080E1A6	N/A	synthetic construct 32630	21071662		Assembly1 EDO:A:805 23~24
2	4w92:C (3.209Å)	96	GO:0180001 (F) cyclic-di-AMP binding GO:0010468 (P) regulation of gene expr...	URS000080DDC9	RF00379	Bacillus subtilis 1423	25271255		Assembly1 EDO:C:207 23~24,110
3	4ybb:DA (2.1Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E25C	RF02540 RF02541	Escherichia coli K-12 83333	25775265		Assembly1 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2826~2827 EDO:DR:203 998~999
4	4ybb:DB (2.1Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	25775265		Assembly1 EDO:DB:212 84~85,93
5	5axw:B (2.7Å)	73	N/A	URS000086852A	N/A	Staphylococcus aureus 1280	26317473		Assembly1 EDO:B:103 21~22
6	5b2o:B (1.7Å)	94	GO:0010468 (P) regulation of gene expr...	URS00008FED26	RF02747	synthetic construct 32630	26875867		Assembly1 EDO:B:110 42~43 EDO:B:111 31,44~45 EDO:B:112 61~62 EDO:B:115 35,41 EDO:B:116 64,69 EDO:B:117 71,94 EDO:B:118 33~34 EDO:B:119 71,89
7	5b2p:B (1.7Å)	94	GO:0010468 (P) regulation of gene expr...	N/A	RF02747	synthetic construct 32630	26875867		Assembly1 EDO:B:109 42~43 EDO:B:110 31,44~45 EDO:B:111 61~62 EDO:B:114 73,89 EDO:B:115 35,41 EDO:B:117 71,89 EDO:B:118 71,94
8	5b2q:B (1.7Å)	94	GO:0010468 (P) regulation of gene expr...	URS00008FED26	RF02747	synthetic construct 32630	26875867		Assembly1 EDO:B:110 42~43 EDO:B:111 31,44~45 EDO:B:112 61~62 EDO:B:115 73,89 EDO:B:116 35,41 EDO:B:120 71,94 EDO:B:121 71,89
9	5b2r:A (2.0Å)	81	N/A	URS0000A76393	RF02348	Streptococcus pyogenes 1314	26990991		Assembly1 EDO:A:106 63~64
10	5b2s:A (2.2Å)	81	N/A	URS0000A76393	RF02348	Streptococcus pyogenes 1314	26990991		Assembly1 EDO:A:106 63~64
11	5b2t:A (2.2Å)	81	N/A	URS0000A76393	RF02348	Streptococcus pyogenes 1314	26990991		Assembly1 EDO:A:107 63~64
12	5czz:B (2.6Å)	73	N/A	URS000086852A	N/A	Staphylococcus aureus 1280	26317473		Assembly1 EDO:B:103 21~22
13	5it8:DA (3.12Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E25C	RF02540 RF02541	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DA:3195 189,205 EDO:DA:3196 2821,2827 EDO:DA:3227 998~999
14	5it8:DB (3.12Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DB:211 84,93
15	5j5b:DA (2.8Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DA:3003 998~999 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2827
16	5j5b:DB (2.8Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DB:210 13,16 EDO:DB:211 84,93
17	5j7l:DA (3.0Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DA:3002 998~999 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2827 EDO:DA:3208 2016~2017
18	5j7l:DB (3.0Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DB:212 84~85,93
19	5j88:DA (3.32Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	27382179		Assembly1 EDO:DA:3002 998~999 EDO:DA:3194 1782,2609 EDO:DA:3198 2821,2827
20	5j88:DB (3.32Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli 562	27382179		Assembly1 EDO:DB:211 84~85,93
21	5j8a:DA (3.1Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	27382179		Assembly1 EDO:DA:3002 998~999 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2827 EDO:DA:3208 2016~2017
22	5j8a:DB (3.1Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli 562	27382179		Assembly1 EDO:DB:213 84~85
23	5j91:DA (2.96Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DA:3003 998~999 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2827
24	5j91:DB (2.96Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli 562	27382179		Assembly1 EDO:DB:210 13,16 EDO:DB:211 84,93
25	5jc9:DA (3.03Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DA:3003 998~999 EDO:DA:3197 1782,2609 EDO:DA:3200 189,205 EDO:DA:3201 2821,2827 EDO:DA:3210 2016~2017
26	5jc9:DB (3.03Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	27382179		Assembly1 EDO:DB:211 84~85,93
27	5t16:H (2.783Å)	34	N/A	URS00021ED9BD	N/A	synthetic construct 32630	28111020 24703949		Assembly1 EDO:H:101 11~12
28	5x2g:B (2.4Å)	93	N/A	URS0000B21DEB	N/A	Campylobacter jejuni 197	28306506		Assembly1 EDO:B:101 18~19
29	5x2h:B (2.3Å)	93	N/A	URS0000B21DEB	N/A	Campylobacter jejuni 197	28306506		Assembly1 EDO:B:101 18~19
30	5xh6:B (2.0Å)	40	N/A	URS0000A763A2	N/A	Acidaminococcus sp. BV3L6 1111120	28595896		Assembly1 EDO:A:1410 -16~-15 EDO:B:104 -9,-5 EDO:B:106 -19,-10
31	5xh7:B (2.0Å)	40	N/A	URS0000A763A2	N/A	Acidaminococcus sp. BV3L6 1111120	28595896		Assembly1 EDO:B:104 -9,-5 EDO:B:106 -19,-10
32	6ai6:B (2.7Å)	81	N/A	URS0000A76393	RF02348	Streptococcus pyogenes 1314	30166441		Assembly1 EDO:A:1410 63~64
33	6i7v:DA (2.9Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E25C	RF02540 RF02541	Escherichia coli 562	30359641		Assembly1 EDO:DA:3052 1782,2609 EDO:DA:3057 189,205 EDO:DA:3059 2821,2827 EDO:DA:3060 1218,1231~1232 EDO:DA:3075 579,2016~2017 EDO:DR:204 998~999
34	6i7v:DB (2.9Å)	119	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E133	RF00001	Escherichia coli 562	30359641		Assembly1 EDO:DB:203 85,93
35	6jdv:B (3.1Å)	143	GO:0006952 (P) defense response	URS000197CF66	RF01344	synthetic construct 32630	31668930		Assembly1 EDO:B:201 25~26
36	6je4:B (3.069Å)	132	GO:0006952 (P) defense response	URS000197CF53	RF01344	synthetic construct 32630	31668930		Assembly1 EDO:B:201 98~99,127
37	6je4:F (3.069Å)	132	GO:0006952 (P) defense response	URS000197CF53	RF01344	synthetic construct 32630	31668930		Assembly2 EDO:F:202 98~99,127
38	6je4:L (3.069Å)	133	GO:0006952 (P) defense response	URS000197CF53	RF01344	synthetic construct 32630	31668930		Assembly3 EDO:L:205 98~99,127
39	6jfu:B (3.2Å)	105	GO:0006952 (P) defense response	URS000197CF53	RF01344	synthetic construct 32630	31668930		Assembly1 EDO:B:201 37,53
40	6joo:B (2.9Å)	96	N/A	URS0000E60BD7	N/A	Corynebacterium diphtheriae 1717	31036811		Assembly1 EDO:B:201 26~27
41	6ozs:D (2.41Å)	12	N/A	URS000197CF4F	N/A	synthetic construct 32630	31444105		Assembly1 EDO:D:402 324~325
42	6tqb:B (1.6Å)	19	N/A	URS0001A24B59	N/A	Mus musculus 10090	32491174		Assembly1 EDO:B:101 8~9 EDO:B:102 12,14~15
43	7kqn:E (2.02Å)	18	N/A	URS0002335901	N/A	Tribolium castaneum 7070	34969861 26581517		Assembly2 EDO:E:101 7~9
44	7os0:D (2.2Å)	48	N/A	URS0002311A20	N/A	Rhodobacter capsulatus SB 1003 272942	35058543		Assembly2 EDO:D:101 28~29,31 EDO:D:102 28~29
45	7os0:F (2.2Å)	48	N/A	URS0002311A20	N/A	Rhodobacter capsulatus SB 1003 272942	35058543		Assembly1 EDO:A:1403 17~18 EDO:F:101 28~29,31
46	7qqp:A (2.6Å)	84	N/A	URS000261771F	RF02348	synthetic construct 32630	36306733		Assembly1 EDO:A:107 63~64 EDO:A:108 3~4
47	7r97:C (1.804Å)	28	N/A	URS000080DE20	N/A	Escherichia coli 562	35829618 30916338		Assembly1 EDO:C:105 6~8
48	7r97:D (1.804Å)	28	N/A	URS000080DE20	N/A	Escherichia coli 562	35829618 30916338		Assembly1 EDO:D:104 5~6 EDO:D:105 4~5
49	7vti:B (1.89Å)	40	N/A	URS000242F08C	N/A	synthetic construct 32630	36027912		Assembly1 EDO:A:821 30~32 EDO:B:104 10,30 EDO:B:106 25~26
50	8pot:B (2.149Å)	84	GO:0030533 (F) triplet codon-amino aci...	N/A	RF00005	Escherichia coli K-12 83333	38985862		Assembly1 EDO:A:902 12~13
51	8ssw:C (2.4Å)	23	N/A	URS000080DD89	N/A	synthetic construct 32630	N/A		Assembly1 EDO:C:101 8~9
52	8ssw:D (2.4Å)	23	N/A	N/A	N/A	synthetic construct 32630	N/A		Assembly1 EDO:D:101 14~15 EDO:D:102 16~17
53	8x5v:B (2.0Å)	106	N/A	N/A	N/A	Brevibacillus laterosporus 1465	38961195		Assembly1 EDO:A:1101 21~22 EDO:B:201 65~66 EDO:B:202 14~15
54	9d5j:D (2.8Å)	32	N/A	N/A	N/A	Homo sapiens 9606	39456162	126	Assembly1 EDO:D:101 24~25
55	9drs:C (2.35Å)	71	GO:0030533 (F) triplet codon-amino aci...	N/A	RF00005	Mycobacterium tuberculosis H37Rv 83332	39919438		Assembly1 EDO:C:101 14,24

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---

Reference:

Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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