SEQ2FUN

FURNA
Download all results in tab-seperated text for 55 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 3ovb:C
    (1.95Å)
    		 35 N/A URS000080E1A6 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    EDO:A:805 23~24
    2 4w92:C
    (3.209Å)
    		 96 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080DDC9 RF00379 Bacillus
    subtilis
    1423    		 25271255 Assembly1
    EDO:C:207 23~24,110
    3 4ybb:DA
    (2.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2826~2827
    EDO:DR:203 998~999
    4 4ybb:DB
    (2.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    EDO:DB:212 84~85,93
    5 5axw:B
    (2.7Å)
    		 73 N/A URS000086852A N/A Staphylococcus
    aureus
    1280    		 26317473 Assembly1
    EDO:B:103 21~22
    6 5b2o:B
    (1.7Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS00008FED26 RF02747 synthetic
    construct
    32630    		 26875867 Assembly1
    EDO:B:110 42~43
    EDO:B:111 31,44~45
    EDO:B:112 61~62
    EDO:B:115 35,41
    EDO:B:116 64,69
    EDO:B:117 71,94
    EDO:B:118 33~34
    EDO:B:119 71,89
    7 5b2p:B
    (1.7Å)
    		 94 GO:0010468 (P) regulation of gene expr... N/A RF02747 synthetic
    construct
    32630    		 26875867 Assembly1
    EDO:B:109 42~43
    EDO:B:110 31,44~45
    EDO:B:111 61~62
    EDO:B:114 73,89
    EDO:B:115 35,41
    EDO:B:117 71,89
    EDO:B:118 71,94
    8 5b2q:B
    (1.7Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS00008FED26 RF02747 synthetic
    construct
    32630    		 26875867 Assembly1
    EDO:B:110 42~43
    EDO:B:111 31,44~45
    EDO:B:112 61~62
    EDO:B:115 73,89
    EDO:B:116 35,41
    EDO:B:120 71,94
    EDO:B:121 71,89
    9 5b2r:A
    (2.0Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    EDO:A:106 63~64
    10 5b2s:A
    (2.2Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    EDO:A:106 63~64
    11 5b2t:A
    (2.2Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 26990991 Assembly1
    EDO:A:107 63~64
    12 5czz:B
    (2.6Å)
    		 73 N/A URS000086852A N/A Staphylococcus
    aureus
    1280    		 26317473 Assembly1
    EDO:B:103 21~22
    13 5it8:DA
    (3.12Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DA:3195 189,205
    EDO:DA:3196 2821,2827
    EDO:DA:3227 998~999
    14 5it8:DB
    (3.12Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DB:211 84,93
    15 5j5b:DA
    (2.8Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DA:3003 998~999
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2827
    16 5j5b:DB
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DB:210 13,16
    EDO:DB:211 84,93
    17 5j7l:DA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DA:3002 998~999
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2827
    EDO:DA:3208 2016~2017
    18 5j7l:DB
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DB:212 84~85,93
    19 5j88:DA
    (3.32Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 27382179 Assembly1
    EDO:DA:3002 998~999
    EDO:DA:3194 1782,2609
    EDO:DA:3198 2821,2827
    20 5j88:DB
    (3.32Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27382179 Assembly1
    EDO:DB:211 84~85,93
    21 5j8a:DA
    (3.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 27382179 Assembly1
    EDO:DA:3002 998~999
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2827
    EDO:DA:3208 2016~2017
    22 5j8a:DB
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27382179 Assembly1
    EDO:DB:213 84~85
    23 5j91:DA
    (2.96Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DA:3003 998~999
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2827
    24 5j91:DB
    (2.96Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27382179 Assembly1
    EDO:DB:210 13,16
    EDO:DB:211 84,93
    25 5jc9:DA
    (3.03Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DA:3003 998~999
    EDO:DA:3197 1782,2609
    EDO:DA:3200 189,205
    EDO:DA:3201 2821,2827
    EDO:DA:3210 2016~2017
    26 5jc9:DB
    (3.03Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    EDO:DB:211 84~85,93
    27 5t16:H
    (2.783Å)
    		 34 N/A URS00021ED9BD N/A synthetic
    construct
    32630    		 28111020
    24703949    		 Assembly1
    EDO:H:101 11~12
    28 5x2g:B
    (2.4Å)
    		 93 N/A URS0000B21DEB N/A Campylobacter
    jejuni
    197    		 28306506 Assembly1
    EDO:B:101 18~19
    29 5x2h:B
    (2.3Å)
    		 93 N/A URS0000B21DEB N/A Campylobacter
    jejuni
    197    		 28306506 Assembly1
    EDO:B:101 18~19
    30 5xh6:B
    (2.0Å)
    		 40 N/A URS0000A763A2 N/A Acidaminococcus
    sp.
    BV3L6
    1111120    		 28595896 Assembly1
    EDO:A:1410 -16~-15
    EDO:B:104 -9,-5
    EDO:B:106 -19,-10
    31 5xh7:B
    (2.0Å)
    		 40 N/A URS0000A763A2 N/A Acidaminococcus
    sp.
    BV3L6
    1111120    		 28595896 Assembly1
    EDO:B:104 -9,-5
    EDO:B:106 -19,-10
    32 6ai6:B
    (2.7Å)
    		 81 N/A URS0000A76393 RF02348 Streptococcus
    pyogenes
    1314    		 30166441 Assembly1
    EDO:A:1410 63~64
    33 6i7v:DA
    (2.9Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 30359641 Assembly1
    EDO:DA:3052 1782,2609
    EDO:DA:3057 189,205
    EDO:DA:3059 2821,2827
    EDO:DA:3060 1218,1231~1232
    EDO:DA:3075 579,2016~2017
    EDO:DR:204 998~999
    34 6i7v:DB
    (2.9Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 30359641 Assembly1
    EDO:DB:203 85,93
    35 6jdv:B
    (3.1Å)
    		 143 GO:0006952 (P) defense response URS000197CF66 RF01344 synthetic
    construct
    32630    		 31668930 Assembly1
    EDO:B:201 25~26
    36 6je4:B
    (3.069Å)
    		 132 GO:0006952 (P) defense response URS000197CF53 RF01344 synthetic
    construct
    32630    		 31668930 Assembly1
    EDO:B:201 98~99,127
    37 6je4:F
    (3.069Å)
    		 132 GO:0006952 (P) defense response URS000197CF53 RF01344 synthetic
    construct
    32630    		 31668930 Assembly2
    EDO:F:202 98~99,127
    38 6je4:L
    (3.069Å)
    		 133 GO:0006952 (P) defense response URS000197CF53 RF01344 synthetic
    construct
    32630    		 31668930 Assembly3
    EDO:L:205 98~99,127
    39 6jfu:B
    (3.2Å)
    		 105 GO:0006952 (P) defense response URS000197CF53 RF01344 synthetic
    construct
    32630    		 31668930 Assembly1
    EDO:B:201 37,53
    40 6joo:B
    (2.9Å)
    		 96 N/A URS0000E60BD7 N/A Corynebacterium
    diphtheriae
    1717    		 31036811 Assembly1
    EDO:B:201 26~27
    41 6ozs:D
    (2.41Å)
    		 12 N/A URS000197CF4F N/A synthetic
    construct
    32630    		 31444105 Assembly1
    EDO:D:402 324~325
    42 6tqb:B
    (1.6Å)
    		 19 N/A URS0001A24B59 N/A Mus
    musculus
    10090    		 32491174 Assembly1
    EDO:B:101 8~9
    EDO:B:102 12,14~15
    43 7kqn:E
    (2.02Å)
    		 18 N/A URS0002335901 N/A Tribolium
    castaneum
    7070    		 34969861
    26581517    		 Assembly2
    EDO:E:101 7~9
    44 7os0:D
    (2.2Å)
    		 48 N/A URS0002311A20 N/A Rhodobacter
    capsulatus
    SB
    1003
    272942    		 35058543 Assembly2
    EDO:D:101 28~29,31
    EDO:D:102 28~29
    45 7os0:F
    (2.2Å)
    		 48 N/A URS0002311A20 N/A Rhodobacter
    capsulatus
    SB
    1003
    272942    		 35058543 Assembly1
    EDO:A:1403 17~18
    EDO:F:101 28~29,31
    46 7qqp:A
    (2.6Å)
    		 84 N/A URS000261771F RF02348 synthetic
    construct
    32630    		 36306733 Assembly1
    EDO:A:107 63~64
    EDO:A:108 3~4
    47 7r97:C
    (1.804Å)
    		 28 N/A URS000080DE20 N/A Escherichia
    coli
    562    		 35829618
    30916338    		 Assembly1
    EDO:C:105 6~8
    48 7r97:D
    (1.804Å)
    		 28 N/A URS000080DE20 N/A Escherichia
    coli
    562    		 35829618
    30916338    		 Assembly1
    EDO:D:104 5~6
    EDO:D:105 4~5
    49 7vti:B
    (1.89Å)
    		 40 N/A URS000242F08C N/A synthetic
    construct
    32630    		 36027912 Assembly1
    EDO:A:821 30~32
    EDO:B:104 10,30
    EDO:B:106 25~26
    50 8pot:B
    (2.149Å)
    		 84 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 38985862 Assembly1
    EDO:A:902 12~13
    51 8ssw:C
    (2.4Å)
    		 23 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 N/A Assembly1
    EDO:C:101 8~9
    52 8ssw:D
    (2.4Å)
    		 23 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    EDO:D:101 14~15
    EDO:D:102 16~17
    53 8x5v:B
    (2.0Å)
    		 106 N/A N/A N/A Brevibacillus
    laterosporus
    1465    		 38961195 Assembly1
    EDO:A:1101 21~22
    EDO:B:201 65~66
    EDO:B:202 14~15
    54 9d5j:D
    (2.8Å)
    		 32 N/A N/A N/A Homo
    sapiens
    9606    		 39456162
    126    		 Assembly1
    EDO:D:101 24~25
    55 9drs:C
    (2.35Å)
    		 71 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 39919438 Assembly1
    EDO:C:101 14,24
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.