SEQ2FUN

FURNA
Download all results in tab-seperated text for 33 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1jzy:A
    (3.5Å)
    		 2774 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 11677599 Assembly1
    ERY:A:2881 2041~2042,2045,2484,2588~2590
    2 1yi2:0
    (2.65Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E07C RF02540 Haloarcula
    marismortui
    2238    		 15851032 Assembly1
    ERY:0:9000 839,2099~2100,2538,2540,2645~2
    646
    3 3j5l:A
    (6.6Å)
    		 2853 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 24662426 Assembly1
    ERY:A:9000 2058~2059,2610~2611
    4 3j7z:A
    (3.9Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    K-12
    83333    		 25306253 Assembly1
    ERY:A:9000 2058~2059,2062,2505,2610~2611
    5 4v7u:BA
    (3.1Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 20876128 Assembly1
    ERY:BA:3136 2058~2059,2062,2610~2611
    6 4v7x:BA
    (3.0Å)
    		 2725 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25D RF02541 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly1
    ERY:BA:3364 746,2058~2059,2062,2503,2505,2
    610~2611
    7 4v7x:DA
    (3.0Å)
    		 2725 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25D RF02541 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly2
    ERY:DA:3330 746,2058~2059,2062,2505,2610~2
    611
    8 4wfn:X
    (3.54Å)
    		 2680 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 28689968 Assembly1
    ERY:X:2902 759,2041,2484,2589~2590
    9 5jte:BA
    (3.6Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    562    		 27380950 Assembly1
    ERY:BA:9000 2058~2059,2505,2610~2611
    10 5ju8:BA
    (3.6Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    K-12
    83333    		 27380950 Assembly1
    ERY:BA:9000 2058~2059,2505,2610~2611
    11 6nd6:1A
    (2.85Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 30733327 Assembly1
    ERY:1A:4074 746,2058~2059,2062,2503,2505,2
    610~2611
    12 6nd6:2A
    (2.85Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 30733327 Assembly2
    ERY:2A:3875 746,2058,2062,2505,2610~2611
    13 6s0x:A
    (2.425Å)
    		 2905 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000EEACE5 RF02541 Staphylococcus
    aureus
    1280    		 31391518 Assembly1
    ERY:A:3001 2084~2086,2089,2530,2637~2638
    14 6s0z:A
    (2.3Å)
    		 2905 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000EEACE5 RF02541 Staphylococcus
    aureus
    1280    		 31391518 Assembly1
    ERY:A:3001 2085~2086,2089,2638
    15 6xhx:1A
    (2.55Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly1
    ERY:1A:4021 746,2058~2059,2062,2503,2505,2
    610~2611
    16 6xhx:2A
    (2.55Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly2
    ERY:2A:3734 746,2058~2059,2062,2503,2505,2
    610~2611
    17 7b5k:A
    (2.9Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    ERY:A:3237 2058~2059,2503,2610~2611
    18 7nso:A
    (2.9Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 34294725 Assembly1
    ERY:7:101 746,2058,2062,2503,2505,2610~2
    611
    19 7nsp:A
    (3.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 34294725 Assembly1
    ERY:7:101 2058,2062,2505,2611
    20 7q4k:BA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 37393329 Assembly1
    ERY:BA:3001 2058~2059,2062,2503,2611
    21 8fc1:1A
    (2.5Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ERY:1A:4042 746,2058~2059,2062,2503,2505,2
    610~2611
    22 8fc1:2A
    (2.5Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly2
    ERY:2A:3732 746,2058~2059,2062,2503,2505,2
    610~2611
    23 8fc4:1A
    (2.45Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly1
    ERY:1A:4027 746,2058~2059,2062,2503,2505,2
    611
    24 8fc4:2A
    (2.45Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 37452045 Assembly2
    ERY:2A:3672 746,2058~2059,2062,2503,2505,2
    610~2611
    25 8vpk:A
    (2.63Å)
    		 2948 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39913204 Assembly1
    ERY:A:3201 861,2282~2283,2286,2727,2729,2
    834~2835
    26 8vr4:A
    (2.8Å)
    		 3118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39913204 Assembly1
    ERY:A:3201 861,2282~2283,2727,2729,2834~2
    835
    27 8xz3:A
    (3.6Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7793F RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 39029461 Assembly1
    ERY:A:3201 861,2282~2283,2286,2834~2835
    28 9o3h:1A
    (2.65Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly1
    ERY:1A:4104 746,2058~2059,2062,2503,2505,2
    610~2611
    29 9o3h:2A
    (2.65Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly2
    ERY:2A:3859 2058~2059,2062,2503,2505,2611
    30 9o3k:1A
    (2.7Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly1
    ERY:1A:4098 746,2058~2059,2062,2503,2505,2
    610~2611
    31 9o3k:2A
    (2.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly2
    ERY:2A:3688 746,2058~2059,2062,2503,2505,2
    610~2611
    32 9o3l:1A
    (2.75Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly1
    ERY:1A:4087 746,2058~2059,2062,2503,2505,2
    610~2611
    33 9o3l:2A
    (2.75Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 40502108 Assembly1
    ERY:2A:3857 746,2058~2059,2062,2503,2505,2
    610~2611
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.