SEQ2FUN

FURNA
Download all results in tab-seperated text for 25 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 5ndh:A
    (1.81Å)
    		 16 N/A URS0000BC4682 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    GAI:A:101 6~9
    2 5ndh:B
    (1.81Å)
    		 16 N/A URS0000BC4682 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly2
    GAI:B:101 6~9
    3 5ndh:C
    (1.81Å)
    		 16 N/A URS0000BC4682 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    GAI:C:101 6~9
    4 5ndh:D
    (1.81Å)
    		 16 N/A URS0000BC4682 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly2
    GAI:D:101 6~9
    5 5ndi:A
    (2.57Å)
    		 20 N/A URS0000BC4687 N/A Escherichia
    coli
    562    		 28529131 Assembly1
    GAI:A:101 8~11
    6 5ndi:B
    (2.57Å)
    		 20 N/A URS0000BC4687 N/A Escherichia
    coli
    562    		 28529131 Assembly1
    GAI:B:101 8~11
    7 5ndi:C
    (2.57Å)
    		 20 N/A URS0000BC4687 N/A Escherichia
    coli
    562    		 28529131 Assembly2
    GAI:C:101 8~11
    8 5ndi:D
    (2.57Å)
    		 20 N/A URS0000BC4687 N/A Escherichia
    coli
    562    		 28529131 Assembly2
    GAI:D:101 8~11
    9 5nef:A
    (1.91Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    GAI:A:101 7~10
    10 5nom:A
    (1.93Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    GAI:A:102 7~10
    11 5nwq:A
    (1.91Å)
    		 41 GO:0010468 (P) regulation of gene expr... URS0000CBFF2B RF01763 Thermobifida
    fusca
    2021    		 28988949 Assembly1
    GAI:A:101 6~7,16~17
    12 5nwq:B
    (1.91Å)
    		 41 GO:0010468 (P) regulation of gene expr... URS0000CBFF2B RF01763 Thermobifida
    fusca
    2021    		 28988949 Assembly2
    GAI:B:101 6~7,16~17
    13 5nz6:A
    (2.94Å)
    		 41 GO:0010468 (P) regulation of gene expr... URS0000CBFF58 RF01763 Thermobifida
    fusca
    2021    		 28988949 Assembly1
    GAI:A:101 6~7,17
    14 5t83:A
    (2.71Å)
    		 90 GO:0010468 (P) regulation of gene expr... URS0000B21DF2 RF00442 Sulfobacillus
    acidophilus
    DSM
    10332
    679936    		 28017522 Assembly1
    GAI:A:116 45,72~73,88,90
    15 5u3g:B
    (2.3Å)
    		 85 GO:0010468 (P) regulation of gene expr... URS0000B21DF0 RF00442 Dickeya
    dadantii
    204038    		 28096518 Assembly1
    GAI:B:125 33,63~64,79,81
    16 5vj9:A
    (1.57Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly1
    GAI:A:101 6~9
    17 5vj9:B
    (1.57Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly1
    GAI:B:101 6~9
    18 5vj9:C
    (1.57Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly2
    GAI:C:101 6~9
    19 5vj9:D
    (1.57Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly2
    GAI:D:101 6~9
    20 5vjb:A
    (2.1Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly1
    GAI:A:101 6~9
    21 5vjb:B
    (2.1Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly1
    GAI:B:101 6~9
    22 5vjb:C
    (2.1Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly2
    GAI:C:101 6~9
    23 5vjb:D
    (2.1Å)
    		 16 N/A URS0000BC467C N/A Pseudomonas
    aeruginosa
    287    		 28600356 Assembly2
    GAI:D:101 6~9
    24 6y3g:F
    (3.1Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 32680846 Assembly1
    GAI:F:104 27~28
    25 7mlw:F
    (2.7Å)
    		 125 GO:0010468 (P) regulation of gene expr... URS00023119BD RF00442 Burkholderia
    sp.
    TJI49
    987057    		 34257148 Assembly1
    GAI:F:201 54~55,107~108,125
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.