SEQ2FUN

FURNA
Download all results in tab-seperated text for 35 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1y39:D
    (2.8Å)
    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E362 RF02541 Escherichia
    coli
    562    		 15734647 Assembly2
    GOL:D:704 319,323,343~344,346~347
    2 2qux:I
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly3
    GOL:I:26 11~12
    3 2qux:L
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly4
    GOL:L:26 10~11
    4 3dvz:A
    (1.0Å)
    		 27 N/A URS000080E28F N/A synthetic
    construct
    32630    		 19228585 Assembly1
    GOL:A:1 2653~2654,2656
    5 3dw4:A
    (0.97Å)
    		 27 N/A URS000080E28F N/A synthetic
    construct
    32630    		 19228585 Assembly1
    GOL:A:1 2653~2654,2656
    6 3dw6:A
    (1.0Å)
    		 27 N/A URS000080E28F N/A synthetic
    construct
    32630    		 19228585 Assembly1
    GOL:A:1 2653~2654,2656
    7 3rg5:A
    (2.0Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000624339 RF01852
    RF00005    		 Mus
    musculus
    10090    		 21629646 Assembly1
    GOL:A:74 10,26
    8 3rg5:B
    (2.0Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000624339 RF01852
    RF00005    		 Mus
    musculus
    10090    		 21629646 Assembly2
    GOL:B:74 30~31
    9 4al5:B
    (2.0Å)
    		 18 N/A URS000080DECD N/A Pseudomonas
    aeruginosa
    287    		 22522703 Assembly1
    GOL:B:1022 19~20
    10 4ed5:D
    (2.0Å)
    		 10 N/A URS000080E27D N/A synthetic
    construct
    32630    		 23519412 Assembly1
    GOL:D:101 3~5
    GOL:D:102 4,7
    11 4nxh:A
    (1.158Å)
    		 27 N/A URS000080E119 N/A Escherichia
    coli
    562    		 24766131 Assembly1
    GOL:A:2701 2653~2654,2656
    12 5d99:A
    (0.97Å)
    		 27 N/A URS000080E28F N/A Enterobacteria
    phage
    L1
    268588    		 27050127
    19228585    		 Assembly1
    GOL:A:2701 2653~2654,2656
    13 5f8i:B
    (2.503Å)
    		 12 N/A URS000080DEB1 N/A synthetic
    construct
    32630    		 27339134 Assembly1
    GOL:B:701 603~604
    14 5f8m:B
    (2.83Å)
    		 12 N/A URS000080DEB1 N/A synthetic
    construct
    32630    		 27339134 Assembly1
    GOL:B:701 603~604
    15 5m73:A
    (3.4Å)
    		 145 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS0000A7784F RF00017
    RF01856    		 Homo
    sapiens
    9606    		 27899666
    1164

    1212

    M347_0.6

    1373

    s55

    110

    s71

    s72    		 Assembly1
    GOL:A:333 205~206
    GOL:A:334 127,221~223
    16 5on6:AR
    (3.1Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 29429877 Assembly2
    GOL:AR:4261 1529,1587,1590~1592
    GOL:AR:4262 2793~2794
    17 5tf6:B
    (2.3Å)
    		 71 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000B21DFD RF00026 Saccharomyces
    cerevisiae
    4932    		 28045380
    383    		 Assembly1
    GOL:B:202 51,53~54
    18 5vaj:C
    (1.95Å)
    		 11 N/A URS0000BC4688 N/A synthetic
    construct
    32630    		 28854734 Assembly1
    GOL:C:101 8~9
    19 6h9i:E
    (2.29Å)
    		 25 N/A URS00021ED981 N/A Aromatoleum
    aromaticum
    EbN1
    76114    		 30397343 Assembly2
    GOL:E:101 10~11
    20 6hhq:AR
    (3.1Å)
    		 3147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 30759226
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly2
    GOL:AR:4262 1448,2351~2352
    21 6ozl:C
    (2.1Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 31444105 Assembly1
    GOL:C:101 17~18
    22 6ozn:C
    (1.9Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 31444105 Assembly1
    GOL:C:102 17~18
    23 7k98:C
    (2.19Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035A243 RF00005 Mycobacterium
    tuberculosis
    H37Rv
    83332    		 33885823 Assembly1
    GOL:C:103 5~6
    24 7l3r:A
    (1.01Å)
    		 27 N/A URS000080DEF4 N/A synthetic
    construct
    32630    		 33856457 Assembly1
    GOL:A:2701 2662~2663
    25 7oax:A
    (2.24Å)
    		 51 N/A URS0002311967 N/A synthetic
    construct
    32630    		 34112799 Assembly1
    GOL:A:104 21~23,25
    26 7oax:C
    (2.24Å)
    		 51 N/A URS0002311967 N/A synthetic
    construct
    32630    		 34112799 Assembly1
    GOL:C:104 23,25
    27 7qr3:C
    (2.18Å)
    		 69 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS0002617738 RF00622 Pan
    troglodytes
    9598    		 N/A Assembly1
    GOL:C:101 57~58
    28 7qsh:A
    (0.86Å)
    		 25 N/A URS000268136D N/A synthetic
    construct
    32630    		 35687141 Assembly1
    GOL:A:2703 2654,2656
    29 7xd8:B
    (2.85Å)
    		 12 N/A URS00026177B2 N/A synthetic
    construct
    32630    		 36577062 Assembly1
    GOL:C:1201 1006~1007
    30 7xd8:E
    (2.85Å)
    		 11 N/A URS00026177B2 N/A synthetic
    construct
    32630    		 36577062 Assembly2
    GOL:E:1101 1005~1006
    31 7xd9:E
    (2.58Å)
    		 13 N/A URS00026177B2 N/A synthetic
    construct
    32630    		 36577062 Assembly2
    GOL:E:1101 1005~1006
    GOL:E:1102 1004~1005
    32 7xd9:K
    (2.58Å)
    		 16 N/A URS00026177B2 N/A synthetic
    construct
    32630    		 36577062 Assembly4
    GOL:K:1101 1004~1005
    33 8tqx:D
    (2.09Å)
    		 19 N/A N/A N/A Zika
    virus
    64320    		 38383158 Assembly1
    GOL:D:101 13~14
    34 8tsv:C
    (1.51Å)
    		 25 N/A N/A N/A Zika
    virus
    64320    		 38383158 Assembly2
    GOL:C:101 6~7
    35 8tsv:D
    (1.51Å)
    		 25 N/A N/A N/A Zika
    virus
    64320    		 38383158 Assembly2
    GOL:D:101 3~4
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.