FURNA

Download all results in tab-seperated text for 21 RNAs.

Click the entry in the '#' column to view structure details of that RNA chain.

Hover over PDB to view the title of the structure.

Hover over Rfam to view names of Rfam families.

Hover over PubMed to view title of the PubMed publications.

Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	Ligand & binding nucleotides
1	2et3:A (2.8Å)	21	N/A	URS000080E2C5	N/A	synthetic construct 32630	16214802	Assembly1 LLL:A:50 15,17~19 LLL:B:51 3~7
2	2et3:B (2.8Å)	21	N/A	URS000080E2C5	N/A	synthetic construct 32630	16214802	Assembly1 LLL:A:50 26~27,30 LLL:B:51 38,40~42
3	4lf4:A (3.3421Å)	1513	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	N/A	Assembly1 LLL:A:1749 1404~1406,1491,1493~1495
4	4lf9:A (3.2811Å)	1512	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	N/A	Assembly1 LLL:A:1743 1404~1408,1491,1493~1495
5	4v53:AA (3.54Å)	1530	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli 562	17660832	Assembly1 LLL:AA:2061 1404~1405,1407~1408,1491,1494~ 1495 LLL:AA:2062 832~834,849~850 LLL:AA:2063 665,667~669,735~736
6	4v53:BB (3.54Å)	2841	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	17660832	Assembly1 LLL:BB:3111 1921~1923
7	4v53:CA (3.54Å)	1530	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli 562	17660832	Assembly2 LLL:CA:2062 1404~1405,1408,1491,1493~1495 LLL:CA:2063 832,834,837,850~852 LLL:CA:2064 667~669,735~736
8	4v53:DB (3.54Å)	2841	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	17660832	Assembly2 LLL:DB:3112 1906,1921~1923,1925
9	4v55:AA (4.0Å)	1530	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli 562	17660832	Assembly1 LLL:AA:1661 1404~1408,1491,1493~1494
10	4v55:BB (4.0Å)	2841	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	17660832	Assembly1 LLL:BB:3111 1921~1923
11	4v55:CA (4.0Å)	1530	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli 562	17660832	Assembly2 LLL:CA:1662 1404~1405,1408,1491,1493~1495
12	4v55:DB (4.0Å)	2841	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli 562	17660832	Assembly2 LLL:DB:3112 1906,1921~1923
13	5obm:1 (3.4Å)	3100	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000061F377	RF02540 RF02543	Saccharomyces cerevisiae S288C 559292	29208708	Assembly1 LLL:1:3989 1192,1194,1297~1298,1300~1301 LLL:1:3990 418~419,423~424 LLL:1:3991 367~369,403~406 LLL:1:3992 82~86,701 LLL:1:3993 917~918,2137~2138,2140,2810 LLL:1:3994 1161~1164,1166,1331 LLL:1:3995 1705,1708,1732,1735~1737 LLL:1:3996 2111,3062,3334~3335,3365~3366 LLL:1:3997 3317~3318,3386~3388 LLL:1:3998 18~19 LLL:1:3999 668~669,790~792 LLL:1:4000 821~826,899~901 LLL:1:4001 1821~1822,1824~1826 LLL:1:4002 2577~2580,2582 LLL:1:4003 2418,2603~2605 LLL:1:4004 1000~1001,1045
14	5obm:2 (3.4Å)	1712	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00005F2C2D	RF01960 RF01959 RF00177	Saccharomyces cerevisiae S288C 559292	29208708	Assembly1 LLL:2:2043 616~617,622,1032,1094,1096 LLL:2:2044 1661~1662,1736~1738 LLL:2:2045 9~11,574,1138
15	5obm:3 (3.4Å)	121	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000055688D	RF00001	Saccharomyces cerevisiae S288C 559292	29208708	Assembly1 LLL:3:220 68,70~72,104~105
16	5obm:4 (3.4Å)	156	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001BF64E	RF00002	Saccharomyces cerevisiae S288C 559292	29208708	Assembly1 LLL:1:3998 136~138 LLL:4:224 65,67~70,87~89
17	5obm:5 (3.4Å)	3134	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000061F377	RF02540 RF02543	Saccharomyces cerevisiae S288C 559292	29208708	Assembly2 LLL:5:4151 1194,1202~1203,1297~1298,1300~ 1301 LLL:5:4152 999~1001,1043~1045 LLL:5:4153 418~419,423 LLL:5:4154 367~369,403~406 LLL:5:4155 83~86,701 LLL:5:4156 821,823,825~826,899~901 LLL:5:4157 917~918,2137~2138,2140,2810,29 56 LLL:5:4158 808~810,907~908,925~926 LLL:5:4159 1161~1166,1331 LLL:5:4160 1204~1207,1294 LLL:5:4161 1224~1225,1288~1289,3116 LLL:5:4162 1618,1821~1822,1825~1826 LLL:5:4163 1705,1732~1733,1735~1738 LLL:5:4164 1886,3306,3377 LLL:5:4165 2111,3062~3063,3334~3335,3365~ 3366 LLL:5:4166 2604~2605 LLL:5:4167 2577~2580,2582 LLL:5:4168 711~712,2775~2777,2780~2781 LLL:5:4169 2916~2918,2935~2936 LLL:5:4170 3101~3102,3129 LLL:5:4171 202,206~207,220,222~223 LLL:5:4172 505~506,509,581~583 LLL:5:4173 841~842 LLL:5:4174 1119,1122~1124,1133~1135 LLL:5:4175 1904,2327,2922,2952~2953,2974~ 2975 LLL:5:4176 2732,2734,2753 LLL:5:4177 2822~2823,2826~2827,2859~2864, 2942 LLL:5:4178 420,2385,2996,3143~3145 LLL:l3:412 3322,3380
18	5obm:6 (3.4Å)	1739	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00005F2C2D	RF01960 RF01959 RF00177	Saccharomyces cerevisiae S288C 559292	29208708	Assembly2 LLL:6:2164 1641~1643,1756,1758 LLL:6:2165 9,11,1138 LLL:6:2166 616~617,622,1032,1094,1096,110 0 LLL:6:2167 875,877~878,947~948 LLL:6:2168 985~987,1012~1013 LLL:6:2169 1031,1075~1076,1092~1093 LLL:6:2170 1487,1495,1593~1594,1596,1598~ 1599 LLL:6:2171 1661~1662,1665,1735~1738 LLL:6:2172 364~365 LLL:6:2173 24~25,30,471,597~598 LLL:6:2175 1003,1005~1006,1761,1768~1769 LLL:6:2176 1114,1128~1130
19	5obm:7 (3.4Å)	121	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000055688D	RF00001	Saccharomyces cerevisiae S288C 559292	29208708	Assembly2 LLL:7:231 51~52 LLL:7:232 68,70~72,104~105 LLL:7:233 1~3,115~116
20	5obm:8 (3.4Å)	158	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001BF64E	RF00002	Saccharomyces cerevisiae S288C 559292	29208708	Assembly2 LLL:8:221 65,67~70,87~89 LLL:8:222 39,137~139
21	8cgu:A (1.89Å)	1047	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000268143B	RF00177 RF01959 RF02542 RF01960	Escherichia coli BW25113 679895	37550453	Assembly1 LLL:A:1603 1404~1408,1491,1493~1495 LLL:A:1604 665~669,735 LLL:A:1605 616~617,620~621 LLL:A:1606 832~834,836~837,849~851

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Reference:

Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.