SEQ2FUN

FURNA
Download all results in tab-seperated text for 6 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 2qex:0
    (2.9Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E276 RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 17664317 Assembly1
    NEG:0:8823 510~511,517~518
    2 4w2i:AA
    (2.7Å)
    		 1496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    NEG:AA:3216 965~966,1054,1197~1198
    NEG:AA:3217 569,873
    NEG:AA:3218 941~942,1336
    NEG:AA:3219 669~672,807
    3 4w2i:BA
    (2.7Å)
    		 2822 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    NEG:AA:3220 1966~1969,1976~1977
    NEG:AA:3221 785~786,801~802,804
    NEG:AA:3222 553~554,558~559,580~581
    NEG:AW:3004 1963~1966,2616
    NEG:AX:3013 2333~2336,2342~2344
    4 4w2i:CA
    (2.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    NEG:CA:3170 965,1054,1197~1198
    NEG:CA:3171 569~570,873
    NEG:CA:3172 942,1336
    NEG:CA:3173 669~672
    5 4w2i:DA
    (2.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    NEG:CA:3174 1945~1946,1949~1950,1954~1955
    NEG:CA:3175 739,754~755,757
    NEG:CA:3176 528~529,533,557~559
    NEG:CA:3177 13~16,524~525
    NEG:CW:3002 1941~1942,1944,2604
    NEG:CX:3004 2321~2324,2329~2332
    6 4wf1:CA
    (3.09Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly2
    NEG:CA:1657 965,1054,1196~1198
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.