SEQ2FUN

FURNA
Download all results in tab-seperated text for 33 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1ei2:A

    		 25 N/A URS000080DF33 N/A Homo
    sapiens
    9606    		 10637322
    M325_0.6

    M175_0.6    		 Assembly1
    NMY:A:26 5~8,14,17~18
    2 1i9v:A
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 11373618 Assembly1
    NMY:A:200 23,44~45
    3 2a04:A
    (2.95Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly1
    NMY:A:17 6~7,9~11
    NMY:A:18 14~16
    4 2a04:B
    (2.95Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly1
    NMY:A:17 26~27
    5 2a04:C
    (2.95Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly2
    NMY:C:1 6~11
    NMY:C:17 11,14~16
    6 2a04:D
    (2.95Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly2
    NMY:C:1 24,26~27
    7 2et4:A
    (2.4Å)
    		 21 N/A URS000080E2C5 N/A synthetic
    construct
    32630    		 16214802 Assembly1
    NMY:A:50 15~19
    NMY:B:51 6~7
    8 2et4:B
    (2.4Å)
    		 21 N/A URS000080E2C5 N/A synthetic
    construct
    32630    		 16214802 Assembly1
    NMY:A:50 27,29~30
    NMY:B:51 38~42
    9 2fcy:A
    (2.2Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16679451 Assembly1
    NMY:A:1001 7~9,14~16
    NMY:B:2001 10~11
    10 2fcy:B
    (2.2Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16679451 Assembly1
    NMY:A:1001 10~11
    NMY:B:2001 7~8,14~16
    11 3c7r:A
    (1.7Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    NMY:A:24 7,9~11
    NMY:B:24 14~16
    12 3c7r:B
    (1.7Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    NMY:A:24 13~16
    NMY:B:24 7,9~11
    13 4lf6:A
    (3.3052Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    NMY:A:1832 1405,1408,1490~1495
    NMY:A:1833 567~569,575,821
    NMY:A:1834 613,616,622,624~625
    NMY:A:1835 119~122,238~241,281~282
    NMY:A:1836 113,307~309,356,391~392
    NMY:A:1837 58~59,387~388
    14 4lfb:A
    (3.009Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    NMY:A:1822 1405,1408,1491,1493~1495
    NMY:A:1823 113,307~309,355~356,390~391
    NMY:A:1824 58~59,387~388
    15 4v52:AA
    (3.21Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17660832 Assembly1
    NMY:AA:1601 1405,1408,1489,1491,1493~1495
    16 4v52:BB
    (3.21Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17660832 Assembly1
    NMY:BB:3001 1920~1923
    17 4v52:CA
    (3.21Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17660832 Assembly2
    NMY:CA:1601 1405,1408,1489~1491,1493~1495
    18 4v52:DB
    (3.21Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17660832 Assembly2
    NMY:DB:3001 1906,1920~1923
    19 4v57:AA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17696316 Assembly1
    NMY:AA:1601 1405,1408,1490~1491,1493~1495
    20 4v57:CA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17696316 Assembly2
    NMY:CA:1601 1405,1408,1490~1491,1493~1495
    21 4v57:DB
    (3.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17696316 Assembly2
    NMY:DB:3001 1906,1919,1921~1923,1929
    22 4v9c:AA
    (3.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly1
    NMY:AA:1655 1405,1407~1408,1490~1495
    NMY:AA:1656 1417,1419~1420,1477
    NMY:AA:1657 902,1513~1515
    23 4v9c:BA
    (3.3Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly1
    NMY:BA:3161 1906,1921~1923
    NMY:BA:3162 990~992,1157~1158,1162~1164,11
    84~1185
    NMY:BA:3163 1202,1204~1206,1239~1240
    NMY:BA:3164 482,492,494,507~508
    NMY:BA:3165 2674,2727~2728,2730~2731
    NMY:BA:3166 536~540,550~551,553
    NMY:BA:3167 1858~1859,1861,1880,1882~1883
    24 4v9c:CA
    (3.3Å)
    		 1538 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly2
    NMY:CA:1672 1406~1408,1489~1491,1493~1494
    25 4v9c:DA
    (3.3Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly2
    NMY:DA:3184 1921~1923,1929~1931
    NMY:DA:3185 2673~2674,2727~2731
    NMY:DA:3186 536~540
    NMY:DA:3187 1858~1859,1879~1880,1882
    NMY:DA:3188 991~992,1157~1159,1162~1163,11
    84
    NMY:DA:3189 482,488,492~494,507
    NMY:DA:3190 1204~1205,1238~1240
    26 4w29:AA
    (3.8Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCE RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly1
    NMY:AA:1601 1405~1406,1408,1491~1494
    27 4w29:BA
    (3.8Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly1
    NMY:BA:2902 1831~1832,1933,1974
    NMY:BA:2903 1963~1966
    NMY:BA:2904 1905,1930,1966~1972,2593
    28 4w29:CA
    (3.8Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCE RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly2
    NMY:CA:1601 1405~1406,1408,1491~1494
    29 4w29:DA
    (3.8Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly2
    NMY:DA:2901 1831~1832,1933~1934,1974
    30 5a9z:AA
    (4.7Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868519 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26283392 Assembly1
    NMY:AA:3001 1906~1910,1920~1923,1930
    31 5a9z:BA
    (4.7Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFBF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26283392 Assembly1
    NMY:BA:1601 1490~1494
    32 5aa0:AA
    (5.0Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868519 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26283392 Assembly1
    NMY:AA:3001 1906~1910,1920~1923,1930
    33 5aa0:BA
    (5.0Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFBF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26283392 Assembly1
    NMY:BA:1601 1490~1494
    << < 1 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.