SEQ2FUN

FURNA
Download all results in tab-seperated text for 28 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 4ybb:AA
    (2.1Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    PG4:AA:1670 774~775,806
    2 4ybb:BA
    (2.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly2
    PG4:BA:1642 774,806
    3 4ybb:DA
    (2.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    PG4:DA:3193 2256~2258,2275
    PG4:DA:3217 1349,1383,1406
    4 5it8:AA
    (3.12Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806
    5 5it8:BA
    (3.12Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly2
    PG4:BA:1642 774,806
    6 5it8:DA
    (3.12Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:DA:3191 2248,2256~2257,2275
    PG4:DA:3213 1349,1383,1406
    7 5j5b:AA
    (2.8Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806~807
    8 5j5b:BA
    (2.8Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly2
    PG4:BA:1601 774,806~807
    9 5j5b:DA
    (2.8Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:DA:3193 2248,2256~2258,2275
    PG4:DA:3215 1349,1383,1406
    10 5j7l:AA
    (3.0Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806
    11 5j7l:BA
    (3.0Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly2
    PG4:BA:1642 774,806~807
    12 5j7l:DA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:DA:3193 2256~2257,2275
    PG4:DA:3216 1349,1383,1406
    13 5j88:AA
    (3.32Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76355 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806
    14 5j88:BA
    (3.32Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76355 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly2
    PG4:BA:1642 774,806~807
    15 5j88:DA
    (3.32Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 27382179 Assembly1
    PG4:DA:3193 2256~2258,2275
    PG4:DA:3216 1349~1350,1406
    16 5j8a:AA
    (3.1Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806
    17 5j8a:BA
    (3.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly2
    PG4:BA:1642 774,806
    18 5j8a:DA
    (3.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 27382179 Assembly1
    PG4:DA:3193 2256~2258,2275
    PG4:DA:3216 1349,1383,1406
    19 5j91:AA
    (2.96Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly1
    PG4:AA:1670 715,774~775,806~807
    20 5j91:BA
    (2.96Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27382179 Assembly2
    PG4:BA:1642 774,806~807
    21 5j91:DA
    (2.96Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:DA:3193 2248,2256~2258,2275
    PG4:DA:3215 1349,1383,1406
    22 5jc9:AA
    (3.03Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:AA:1670 774,806
    23 5jc9:BA
    (3.03Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7637F RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly2
    PG4:BA:1642 774,806
    24 5jc9:DA
    (3.03Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 27382179 Assembly1
    PG4:DA:3196 2256~2257,2275
    PG4:DA:3218 1349,1383,1406
    25 5vw1:C
    (2.598Å)
    		 73 N/A URS0000BC4660 RF02348 Listeria
    monocytogenes
    1639    		 28602637 Assembly1
    PG4:C:102 18~20
    26 6dtd:C
    (1.65Å)
    		 37 N/A URS0000E60B71 N/A Segatella
    buccae
    28126    		 30917325 Assembly1
    PG4:C:102 13,27,30
    27 6i7v:BA
    (2.9Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 30359641 Assembly1
    PG4:BA:1607 715,774,806
    28 6i7v:DA
    (2.9Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 30359641 Assembly1
    PG4:DA:3048 2248,2256~2257,2275
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.