SEQ2FUN

FURNA
Download all results in tab-seperated text for 29 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 2l1v:A

    		 36 N/A URS000080E08D N/A synthetic
    construct
    32630    		 19285444 Assembly1
    PRF:A:37 7~8,13~14,19~20,32~33
    2 2miy:A

    		 59 GO:0008616 (P) queuosine biosynthetic ... URS000080E2D6 RF01054 Streptococcus
    pneumoniae
    1313    		 24469808 Assembly1
    PRF:A:101 7~8,19~20,50~51
    3 3fu2:A
    (2.85Å)
    		 32 GO:0008616 (P) queuosine biosynthetic ... URS000080E020 RF00522 synthetic
    construct
    32630    		 19234468 Assembly1
    PRF:A:101 5,11~12,17~18,30
    4 3fu2:B
    (2.85Å)
    		 33 GO:0008616 (P) queuosine biosynthetic ... URS000080E020 RF00522 synthetic
    construct
    32630    		 19234468 Assembly2
    PRF:B:101 5,11~12,17~18,30
    5 3fu2:C
    (2.85Å)
    		 32 GO:0008616 (P) queuosine biosynthetic ... URS000080E020 RF00522 synthetic
    construct
    32630    		 19234468 Assembly3
    PRF:C:101 5,11~12,17~18,30
    6 3k1v:A
    (2.2Å)
    		 30 N/A URS000080E037 N/A synthetic
    construct
    32630    		 19234468 Assembly1
    PRF:A:301 5,11~12,17~18,30
    7 3q50:A
    (2.75Å)
    		 33 N/A URS000080E32E N/A synthetic
    construct
    32630    		 21592962
    19261617    		 Assembly1
    PRF:A:34 5,11,15~16,29
    8 4jf2:A
    (2.28Å)
    		 77 N/A URS000080E2AB N/A Lacticaseibacillus
    rhamnosus
    47715    		 23584677 Assembly1
    PRF:A:101 30~31,41~42,70~71
    9 4rzd:A
    (2.75Å)
    		 99 GO:0008616 (P) queuosine biosynthetic ... URS0000868518 RF02680 Faecalibacterium
    prausnitzii
    853    		 26106162 Assembly1
    PRF:A:201 7~8,17~18,84~85
    10 5d5l:A
    (2.5Å)
    		 77 N/A URS0000A76324 N/A Lacticaseibacillus
    rhamnosus
    LOCK908
    1318634    		 N/A Assembly1
    PRF:A:117 30~31,41~42,70~71
    11 5d5l:B
    (2.5Å)
    		 77 N/A URS0000A76324 N/A Lacticaseibacillus
    rhamnosus
    LOCK908
    1318634    		 N/A Assembly2
    PRF:B:109 30~31,41~42,70~71
    12 5d5l:C
    (2.5Å)
    		 77 N/A URS0000A76324 N/A Lacticaseibacillus
    rhamnosus
    LOCK908
    1318634    		 N/A Assembly3
    PRF:C:104 30~31,41~42,70~71
    13 5d5l:D
    (2.5Å)
    		 77 N/A URS0000A76324 N/A Lacticaseibacillus
    rhamnosus
    LOCK908
    1318634    		 N/A Assembly4
    PRF:D:106 30~31,41~42,70~71
    14 6vui:A
    (2.681Å)
    		 33 N/A URS000080E32E N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 32597951 Assembly1
    PRF:A:101 5,11,15~16,29
    15 6xkn:A
    (2.73Å)
    		 96 GO:0008616 (P) queuosine biosynthetic ... URS0002311A1C RF02680 Faecalibacterium
    prausnitzii
    853    		 39413212 Assembly1
    PRF:A:201 7~8,17~18,84~85
    16 6xko:A
    (2.75Å)
    		 95 GO:0008616 (P) queuosine biosynthetic ... URS000231199B RF02680 Faecalibacterium
    prausnitzii
    853    		 39413212 Assembly1
    PRF:A:201 7~8,17~18,84~85
    17 7rex:A
    (2.6Å)
    		 34 GO:0008616 (P) queuosine biosynthetic ... URS00023119CB RF00522 Carnobacterium
    antarcticum
    2126436    		 N/A Assembly1
    PRF:A:101 12,16,31~32
    PRF:A:102 5,17~18,30
    18 7rex:B
    (2.6Å)
    		 33 GO:0008616 (P) queuosine biosynthetic ... URS00023119CB RF00522 Carnobacterium
    antarcticum
    2126436    		 N/A Assembly2
    PRF:B:101 12,16,31~32
    PRF:B:102 5~6,17~18,30
    19 7rex:C
    (2.6Å)
    		 30 N/A URS00023119CB N/A Carnobacterium
    antarcticum
    2126436    		 N/A Assembly3
    PRF:C:101 12,31
    PRF:C:102 5~6,17~18,30
    20 8fb3:A
    (3.0Å)
    		 34 GO:0008616 (P) queuosine biosynthetic ... URS00023119CB RF00522 Carnobacterium
    antarcticum
    2126436    		 36762498
    35017488
    36227562    		 Assembly1
    PRF:A:101 5~6,17~18,30
    PRF:A:102 7~8,12,31
    21 8fb3:B
    (3.0Å)
    		 30 N/A URS00023119CB N/A Carnobacterium
    antarcticum
    2126436    		 36762498
    35017488
    36227562    		 Assembly2
    PRF:B:101 5~6,17~18,30
    PRF:B:102 7,12,16,31~32
    22 8fb3:C
    (3.0Å)
    		 33 N/A URS00023119CB N/A Carnobacterium
    antarcticum
    2126436    		 36762498
    35017488
    36227562    		 Assembly3
    PRF:C:101 5~6,17~18,30
    PRF:C:102 7,12,16,31
    23 8fza:A
    (2.3Å)
    		 30 N/A URS0002681474 N/A Escherichia
    coli
    562    		 37660906 Assembly1
    PRF:A:101 5~6,11,14~15,27~28
    24 8fza:B
    (2.3Å)
    		 28 N/A URS0002681474 N/A Escherichia
    coli
    562    		 37660906 Assembly2
    PRF:B:101 5~6,11~12,14~15,27~28
    25 8g4w:R
    (3.8Å)
    		 47 GO:0008616 (P) queuosine biosynthetic ... URS000268143D RF00522 Escherichia
    coli
    562    		 37264140 Assembly1
    PRF:R:101 7~8,13~14,19~20,30,32
    26 8g7e:R
    (3.9Å)
    		 47 GO:0008616 (P) queuosine biosynthetic ... URS000268143D RF00522 Escherichia
    coli
    562    		 37264140 Assembly1
    PRF:R:101 7~8,13~14,19~20,30,32
    27 8g8z:R
    (4.3Å)
    		 48 GO:0008616 (P) queuosine biosynthetic ... URS0002681450 RF00522 Escherichia
    coli
    562    		 37264140 Assembly1
    PRF:R:101 7~8,13~14,19~20,32
    28 8toz:A
    (3.0Å)
    		 96 GO:0008616 (P) queuosine biosynthetic ... N/A RF02680 Faecalibacterium
    prausnitzii
    853    		 39413212 Assembly1
    PRF:A:201 7~8,17~18,84~85
    29 8vpv:A
    (3.04Å)
    		 100 GO:0008616 (P) queuosine biosynthetic ... N/A RF02680 Faecalibacterium
    prausnitzii
    853    		 39413212 Assembly1
    PRF:A:201 7~8,17~18,85
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.