SEQ2FUN

FURNA
Download all results in tab-seperated text for 19 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 2bh2:C
    (2.15Å)
    		 30 N/A URS000080E351 N/A Escherichia
    coli
    562    		 15766524
    15016356    		 Assembly1
    SAH:A:500 1937,1939
    2 2bh2:D
    (2.15Å)
    		 30 N/A URS000080E351 N/A Escherichia
    coli
    562    		 15766524
    15016356    		 Assembly2
    SAH:B:500 1937,1939
    3 3e5e:A
    (2.9Å)
    		 53 EC:2.5.1.6 methionine adenosyltransferase
    GO:0004478 (F) methionine adenosyltran...
    GO:0006446 (P) regulation of translati...    		 URS000080DEC9 RF01767 synthetic
    construct
    32630    		 18806797 Assembly1
    SAH:A:220 7,37~38,47~48
    4 3gx3:A
    (2.7Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080E047 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 20006621 Assembly1
    SAH:A:301 7,11,45,47,57~59,88~89
    5 3npn:A
    (2.792Å)
    		 50 N/A URS000080DDCD N/A Ralstonia
    solanacearum
    305    		 20864509 Assembly1
    SAH:A:55 15~16,29~32,47
    6 3npq:A
    (2.1814Å)
    		 51 N/A URS000080E144 N/A Ralstonia
    solanacearum
    305    		 20864509 Assembly1
    SAH:A:55 15~16,29~32,47
    7 3npq:B
    (2.1814Å)
    		 49 N/A URS000080E144 N/A Ralstonia
    solanacearum
    305    		 20864509 Assembly2
    SAH:B:55 15~16,29~32,47
    8 3npq:C
    (2.1814Å)
    		 50 N/A URS000080E144 N/A Ralstonia
    solanacearum
    305    		 20864509 Assembly3
    SAH:C:55 15~16,29~31,47
    9 6hag:A

    		 43 GO:0010468 (P) regulation of gene expr...
    GO:0046500 (P) S-adenosylmethionine me...    		 URS0000E60BAC RF01727 Pseudomonadota
    1224    		 30590743 Assembly1
    SAH:A:101 8~9,16~17,36,38
    10 6lau:A
    (3.109Å)
    		 54 GO:0010468 (P) regulation of gene expr... URS0001A16A77 RF02885 Bifidobacterium
    angulatum
    1683    		 31844059 Assembly1
    SAH:A:101 8~9,32~34,36~37
    11 6lau:B
    (3.109Å)
    		 55 GO:0010468 (P) regulation of gene expr... URS0001A16A77 RF02885 Bifidobacterium
    angulatum
    1683    		 31844059 Assembly2
    SAH:B:101 8~9,32~33,36
    12 6yl5:A
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:A:101 15~16,23~25
    SAH:B:101 14,24~26
    13 6yl5:C
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:C:101 15~16,23~25
    SAH:I:102 22~23
    14 6yl5:E
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:E:101 15~16,23~25
    SAH:F:101 14,24~26
    15 6yl5:G
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:B:101 22~23
    SAH:G:101 15~16,23~24
    16 6yl5:I
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:I:101 15~16,23~25
    SAH:I:102 14,24~26
    17 6yl5:K
    (1.7Å)
    		 26 N/A URS0001A24B6D N/A Roseobacter
    sp.
    1907202    		 32520325 Assembly1
    SAH:F:101 22~23
    SAH:K:101 15~16,23~24
    18 9fn2:A
    (2.9Å)
    		 58 N/A N/A N/A synthetic
    construct
    32630    		 39779902 Assembly1
    SAH:A:204 8,10,51~53
    19 9fn2:B
    (2.9Å)
    		 58 N/A N/A N/A synthetic
    construct
    32630    		 39779902 Assembly2
    SAH:B:203 8,10,30,51~52
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.