SEQ2FUN

FURNA
Download all results in tab-seperated text for 18 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1fjg:A
    (3.0Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11014183 Assembly1
    SCM:A:1633 1063~1064,1066,1068~1069,1191~
    1194,1387~1388
    2 4v56:AA
    (3.93Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 17696316 Assembly1
    SCM:AA:1661 1063~1064,1066,1068~1069,1191~
    1193,1387
    3 4v56:CA
    (3.93Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 17696316 Assembly2
    SCM:CA:1659 1063~1064,1066,1068~1069,1191~
    1194,1386~1388
    4 4v57:AA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 17696316 Assembly1
    SCM:AA:1662 1063~1064,1066,1068~1069,1191~
    1193,1386~1388
    5 4v57:CA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 17696316 Assembly2
    SCM:CA:1661 1063~1064,1066,1068~1069,1191~
    1193,1387~1388
    6 7n2v:16
    (2.54Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    K-12
    83333    		 34234344 Assembly1
    SCM:16:1601 1064,1066,1068,1191~1193,1387~
    1388
    SCM:16:1602 688~690,696,700
    7 7n2v:23
    (2.54Å)
    		 2904 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 34234344 Assembly1
    SCM:23:3001 489,1284~1285
    8 7p7q:a
    (2.4Å)
    		 1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358DE RF00177 Enterococcus
    faecalis
    1351    		 35387982
    30404935    		 Assembly1
    SCM:a:1652 1090~1091,1093,1095,1217~1219,
    1412~1413
    9 7p7r:a
    (2.9Å)
    		 1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358DE RF00177 Enterococcus
    faecalis
    V583
    226185    		 35387982
    30404935    		 Assembly1
    SCM:a:1675 1090~1091,1093,1095~1096,1217~
    1219,1412~1413
    10 7p7s:a
    (3.0Å)
    		 1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358DE RF00177 Enterococcus
    faecalis
    1351    		 35387982
    30404935    		 Assembly1
    SCM:a:1675 1090~1091,1093,1095~1096,1217~
    1220,1413~1414
    11 7p7t:a
    (2.9Å)
    		 1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358DE RF00177 Enterococcus
    faecalis
    1351    		 35387982
    30404935    		 Assembly1
    SCM:a:1615 1090~1091,1093,1095~1096,1217~
    1219,1412~1413
    12 7p7u:a
    (3.1Å)
    		 1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358DE RF00177 Enterococcus
    faecalis
    1351    		 35387982
    30404935    		 Assembly1
    SCM:a:1660 1090~1091,1093,1095~1096,1217~
    1219,1412~1413
    13 7pib:5
    (4.7Å)
    		 1493 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00019B76CF RF00177 Mycoplasmoides
    pneumoniae
    M129
    272634    		 36171285 Assembly1
    SCM:5:1601 1054~1055,1057,1059,1166~1167,
    1361~1362
    14 8ca7:A
    (2.06Å)
    		 502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C37 RF00177 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    SCM:A:1603 1063~1064,1066,1068~1069,1191~
    1194,1386~1388
    15 8cai:A
    (2.08Å)
    		 1114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C37 RF00177 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    SCM:A:1607 1063~1064,1066,1068~1069,1191~
    1194,1386~1388
    16 8uvr:1a
    (2.6Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    SCM:1a:1815 1063~1064,1066,1068~1069,1191~
    1193,1386~1388
    17 8uvr:2a
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    SCM:2a:3236 1063~1064,1066,1068~1069,1191~
    1193,1386~1387
    18 9h90:a
    (2.8Å)
    		 1509 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Vibrio
    natriegens
    691    		 40331629 Assembly1
    SCM:a:1601 1073~1074,1076,1078~1079,1202~
    1204,1397~1399
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.