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FURNA
Download all results in tab-seperated text for 69 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1duh:A
    (2.7Å)
    		 45 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0AE RF00169 synthetic
    construct
    32630    		 10801497 Assembly1
    SO4:A:4 48~49
    2 1exd:B
    (2.7Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE52 RF00005 Escherichia
    coli
    562    		 10881199 Assembly1
    SO4:B:1393 925~926,944
    3 1i6u:C
    (2.6Å)
    		 37 N/A URS000080E0AA N/A synthetic
    construct
    32630    		 11478863 Assembly1
    SO4:C:38 23~24
    4 1i6u:D
    (2.6Å)
    		 37 N/A URS000080E0AA N/A synthetic
    construct
    32630    		 11478863 Assembly2
    SO4:D:38 23~24
    5 1il2:C
    (2.6Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AD0B9 RF00005 Saccharomyces
    cerevisiae
    4932    		 11566892 Assembly1
    SO4:C:701 975~976
    6 1q93:C
    (2.25Å)
    		 27 N/A URS000080DDB7 N/A synthetic
    construct
    32630    		 14627814 Assembly3
    SO4:C:104 15~16
    SO4:C:105 27~28
    7 1q96:A
    (1.75Å)
    		 27 N/A URS000080E1CA N/A synthetic
    construct
    32630    		 14627814 Assembly1
    SO4:A:314 23~24
    8 1xpe:B
    (1.94Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 16403527 Assembly1
    SO4:B:107 10~11
    9 1xpf:A
    (2.3Å)
    		 23 N/A URS000080E21C N/A synthetic
    construct
    32630    		 16403527 Assembly1
    SO4:A:102 8~9
    10 2b8r:B
    (2.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 11702070 Assembly1
    SO4:B:107 10~11
    11 2b8s:A
    (2.76Å)
    		 23 N/A URS000080E21C N/A synthetic
    construct
    32630    		 11702070 Assembly1
    SO4:A:104 8~9
    12 2bj6:E
    (2.6Å)
    		 10 N/A URS000080E1AA N/A Homo
    sapiens
    9606    		 15740130
    10980452
    11829600    		 Assembly1
    SO4:E:1011 3~4
    13 2qk9:B
    (2.55Å)
    		 18 N/A URS000080E35D N/A synthetic
    construct
    32630    		 17964265 Assembly1
    SO4:B:1007 8~9
    14 2xdb:G
    (2.55Å)
    		 36 N/A URS000080E054 N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly1
    SO4:G:1032 26~27
    15 3b58:A
    (2.65Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 18596253 Assembly1
    SO4:A:14 1~2
    16 3mjb:A
    (2.8Å)
    		 29 N/A URS000080DDC2 N/A synthetic
    construct
    32630    		 20410239 Assembly1
    SO4:A:100 6183,6195~6196
    SO4:A:103 6201~6202
    17 3mjb:B
    (2.8Å)
    		 14 N/A URS000080E14D N/A synthetic
    construct
    32630    		 20410239 Assembly1
    SO4:B:101 6214~6215
    18 3r1d:A
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly1
    SO4:A:14 2~3
    19 3r1d:B
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly1
    SO4:B:13 2~3
    20 3r1d:D
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly2
    SO4:D:12 2~3
    21 3r1d:E
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly3
    SO4:E:12 2~3
    SO4:E:13 5~6
    22 3ski:A
    (2.3Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    SO4:A:213 30,80
    SO4:A:216 39~40
    23 3ski:B
    (2.3Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    SO4:B:214 24~25
    24 3skz:A
    (2.605Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    SO4:A:216 39~40
    25 3skz:B
    (2.605Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    SO4:B:219 39~40
    26 3slm:A
    (2.7Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    SO4:A:212 63~64
    27 3slm:B
    (2.7Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    SO4:B:219 39~40
    SO4:B:230 30,80
    28 3slq:A
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    SO4:A:216 39~40
    29 3slq:B
    (2.5Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    SO4:B:217 64~65
    SO4:B:219 39~40
    30 3umy:B
    (1.9Å)
    		 80 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E005 RF02541 Thermus
    thermophilus
    274    		 N/A Assembly1
    SO4:B:2207 2139~2140
    SO4:B:2208 2133,2157
    31 3w3s:B
    (3.095Å)
    		 98 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E0B2 RF01852
    RF00005    		 Aquifex
    aeolicus
    VF5
    224324    		 23649835 Assembly1
    SO4:A:2019 47N,47O
    32 4e48:D
    (2.5Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 22731704 Assembly2
    SO4:D:101 16~17
    33 4g6p:A
    (2.641Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    SO4:A:201 -5~-4
    34 4j5v:B
    (2.15Å)
    		 19 N/A URS000080E070 N/A synthetic
    construct
    32630    		 N/A Assembly1
    SO4:B:302 207~208
    35 4mcf:B
    (1.899Å)
    		 11 N/A URS000080DF2A N/A Homo
    sapiens
    9606    		 25377354 Assembly2
    SO4:B:102 7~8
    36 4mcf:F
    (1.899Å)
    		 10 N/A URS000080DF2A N/A Homo
    sapiens
    9606    		 25377354 Assembly3
    SO4:F:101 7~8
    37 4qg3:B
    (2.0Å)
    		 80 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E005 RF02541 Thermus
    thermophilus
    274    		 25664749 Assembly1
    SO4:B:2201 2128~2129
    38 4qk8:A
    (3.05Å)
    		 122 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS00021ED98F RF00379 Thermoanaerobacter
    pseudethanolicus
    496866    		 25086507 Assembly1
    SO4:A:208 29,95~96
    39 4qka:A
    (3.2Å)
    		 120 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS00021ED98F RF00379 Thermoanaerobacter
    pseudethanolicus
    496866    		 25086507 Assembly1
    SO4:A:205 95~96
    40 4xw0:A
    (1.81Å)
    		 10 N/A URS00008FED46 N/A Homo
    sapiens
    9606    		 26543073 Assembly1
    SO4:A:101 6~7
    41 5ah5:C
    (2.1Å)
    		 80 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00008FED43 RF00005 Agrobacterium
    tumefaciens
    358    		 27713402 Assembly2
    SO4:C:1078 69~70
    42 5ah5:D
    (2.1Å)
    		 81 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00008FED43 RF00005 Agrobacterium
    tumefaciens
    358    		 27713402 Assembly1
    SO4:D:1078 69~70
    43 5aox:C
    (2.04Å)
    		 87 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS00008FED21 RF00017 synthetic
    construct
    32630    		 26585389 Assembly1
    SO4:C:1011 3~4
    44 5f9r:A
    (3.4Å)
    		 116 N/A URS00008FED20 RF02348 Streptococcus
    pyogenes
    MGAS8232
    186103    		 26841432 Assembly1
    SO4:A:201 21~22
    45 5lr5:C
    (2.4Å)
    		 10 N/A URS000086850F N/A Homo
    sapiens
    9606    		 28623187 Assembly2
    SO4:C:101 7~8
    46 5ndh:D
    (1.81Å)
    		 16 N/A URS0000BC4682 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly2
    SO4:D:103 4,14
    47 5nef:A
    (1.91Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    SO4:A:102 2~3
    48 5neo:A
    (1.69Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    SO4:A:101 2~3
    49 5nep:A
    (1.6Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    SO4:A:102 2~3
    50 5nom:A
    (1.93Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 28529131 Assembly1
    SO4:A:101 2~3
    51 6hbx:A
    (1.54Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 30609994 Assembly1
    SO4:A:102 2~3
    52 6hc5:A
    (1.413Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 30609994 Assembly1
    SO4:A:101 2~3
    53 6n5k:A
    (3.098Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF5B RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:206 98~99
    54 6n5n:A
    (2.951Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF65 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:206 98~99
    SO4:A:208 2~3
    55 6n5o:A
    (2.708Å)
    		 126 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF62 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:208 99~100
    56 6n5q:A
    (2.946Å)
    		 128 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF57 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:208 101~102
    57 6n5s:A
    (2.802Å)
    		 123 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF70 RF00379 Homo
    sapiens
    9606    		 N/A
    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:209 97~98
    58 6n5t:A
    (2.787Å)
    		 126 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF7C RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    s16

    1264

    1367

    s55

    354

    s50

    M065_0.6

    M153_0.6

    467    		 Assembly1
    SO4:A:208 99~100
    59 6ufm:B
    (2.82Å)
    		 98 N/A URS000197CF74 N/A Nocardia
    farcinica
    37329    		 31792448 Assembly1
    SO4:B:101 81,93
    60 6wjr:X
    (2.7Å)
    		 111 GO:0010181 (F) FMN binding URS000080DE72 RF00050 Fusobacterium
    nucleatum
    851    		 33103111 Assembly1
    SO4:X:201 10~11,32,62
    61 6wtr:A
    (3.082Å)
    		 125 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000197CF84 RF00379 Homo
    sapiens
    9606    		 N/A
    M145_0.6

    M269_0.6

    1311

    M024_0.6

    M347_0.6

    M153_0.6

    1367

    s55

    354

    s50

    M065_0.6

    1264

    467    		 Assembly1
    SO4:A:207 98~99
    62 7e9e:A
    (1.57Å)
    		 33 N/A URS0000E60BA5 N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 34615874 Assembly1
    SO4:A:103 18~19
    63 7kd1:A
    (1.9Å)
    		 89 GO:0046653 (P) tetrahydrofolate metabo... URS000080DF21 RF01831 Streptococcus
    mutans
    UA159
    210007    		 33571639 Assembly1
    SO4:A:101 30~31
    SO4:A:102 54,68
    64 7m2t:U
    (2.71Å)
    		 10 N/A URS0000A7631E N/A Satellite
    tobacco
    mosaic
    virus
    12881    		 34866603 Assembly1
    SO4:E:202 168~169
    65 7m2t:ee
    (2.71Å)
    		 10 N/A URS0000A7631E N/A Satellite
    tobacco
    mosaic
    virus
    12881    		 34866603 Assembly1
    SO4:I-2:201 166~167
    66 7m2t:i
    (2.71Å)
    		 10 N/A URS0001C1D8A6 N/A Satellite
    tobacco
    mosaic
    virus
    12881    		 34866603 Assembly1
    SO4:E:202 188~189
    67 7m2t:m
    (2.71Å)
    		 10 N/A URS0001C1D8A6 N/A Satellite
    tobacco
    mosaic
    virus
    12881    		 34866603 Assembly1
    SO4:I:201 186~187
    68 8swc:B
    (2.68Å)
    		 20 N/A URS00021ED8FD N/A Homo
    sapiens
    9606    		 N/A Assembly1
    SO4:B:101 18~19
    69 9aus:C
    (2.07Å)
    		 22 N/A N/A N/A unidentified
    32644    		 39178230 Assembly2
    SO4:C:101 17,19
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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