SEQ2FUN

FURNA
Download all results in tab-seperated text for 13 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1 1kd3:A
    (1.8Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    TL:B:501 7~8
    2 1kd3:B
    (1.8Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    TL:A:502 7~8
    3 2oih:B
    (2.4Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E101 RF00094 synthetic
    construct
    32630    		 17355864 Assembly1
    TL:B:201 120,122,163
    TL:B:203 158~159
    TL:B:204 168~169
    TL:B:205 128~129
    TL:B:207 100~101
    TL:B:208 138~139
    TL:B:209 134~135
    TL:B:210 134~135
    TL:B:211 125,128
    TL:B:212 110~111
    TL:B:213 104~105
    4 2oj3:B
    (2.9Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E101 RF00094 synthetic
    construct
    32630    		 17355864 Assembly1
    TL:B:207 100~101
    TL:B:211 125,128
    TL:B:213 105~106
    5 3dj2:A
    (2.5Å)
    		 174 GO:0009085 (P) lysine biosynthetic pro... URS000080E0C5 RF00168 Thermotoga
    maritima
    2336    		 18784651 Assembly1
    TL:A:250 80,113,164
    TL:A:251 115~116
    TL:A:253 43~45
    TL:A:254 82~83
    TL:A:255 122~123
    TL:A:256 141~142,160~161
    TL:A:257 171~173
    TL:A:258 67~69
    TL:A:259 11~12,14
    6 3oxm:A
    (2.95Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly1
    TL:A:204 8,80
    TL:A:205 69~72
    TL:A:206 41~43,62
    TL:A:210 78~79
    7 3oxm:B
    (2.95Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly2
    TL:B:201 18,20
    TL:B:203 8,80
    TL:B:208 6,8
    TL:B:209 1~2
    8 4e8q:A
    (2.84Å)
    		 393 GO:0000373 (P) Group II intron splicing URS000080DE44 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    TL:A:402 268~270
    TL:A:403 266~267
    TL:A:404 297,320
    TL:A:407 4,375~376
    TL:A:409 87,96~97
    TL:A:410 33~34
    TL:A:411 288,358~359,377
    TL:A:414 128~129
    TL:A:415 5,376
    TL:A:416 358,377
    TL:A:417 9~10
    9 4en5:A
    (2.957Å)
    		 52 GO:0010628 (P) positive regulation of ...
    GO:1902617 (P) response to fluoride    		 URS000080E2F0 RF01734 Thermotoga
    petrophila
    93929    		 22678284 Assembly1
    TL:A:112 2~3
    TL:A:113 5,42
    TL:A:114 10~11
    TL:A:115 34~35
    TL:A:116 5~7
    10 6dls:A
    (2.885Å)
    		 107 GO:0010468 (P) regulation of gene expr... URS0000E60BB3 RF00442 Syntrophothermus
    lipocalidus
    DSM
    12680
    643648    		 30120360 Assembly1
    TL:A:202 84~85
    11 6dme:A
    (2.702Å)
    		 102 N/A URS0000E60BA7 N/A Sulfobacillus
    acidophilus
    DSM
    10332
    679936    		 30120360 Assembly1
    TL:A:215 17,35~38
    12 7q82:B
    (2.95Å)
    		 24 N/A URS00023358C9 N/A synthetic
    construct
    32630    		 35301481 Assembly1
    TL:B:101 15~16
    TL:B:102 1~2
    TL:B:104 21~22
    13 7q82:C
    (2.95Å)
    		 24 N/A URS00023358B5 N/A synthetic
    construct
    32630    		 35301481 Assembly1
    TL:C:102 29~30
    TL:C:103 38,41~42
    TL:C:104 45~47
    TL:C:105 28~29
    TL:C:106 34~35
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.