SEQ2FUN

FURNA
Download all results in tab-seperated text for 15266 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1301 3kfu:N
    (3.0Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00006143B5 RF00005 Thermus
    thermophilus
    HB8
    300852    		 20717102 Assembly1
    protein:B:1~415 11~12,24~27,32~36,38
    protein:H:2~468 72~73
    1302 3ks8:E
    (2.401Å)
    		 18 N/A URS000080E139 N/A synthetic
    construct
    32630    		 20018665 Assembly1
    protein:A:208~329 3~5
    1303 3ks8:F
    (2.401Å)
    		 18 N/A URS000080E132 N/A synthetic
    construct
    32630    		 20018665 Assembly1
    protein:A:208~329 7,16~18
    1304 3ktv:A
    (3.8Å)
    		 108 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080E17A RF00017 Homo
    sapiens
    9606    		 20179341
    s71

    1212

    1373

    s72

    1164    		 Assembly1
    protein:B:10~115 141~143,147~151,196~198,204
    1305 3ktv:C
    (3.8Å)
    		 108 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080E17A RF00017 Homo
    sapiens
    9606    		 20179341
    s71

    1212

    1373

    s72

    1164    		 Assembly2
    protein:D:8~115 141~143,147~151,196~198
    1306 3ktw:C
    (3.2Å)
    		 96 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...
    GO:0005786 (C) signal recognition part...    		 URS000080DE8C RF01857
    RF00169
    RF00017    		 Saccharolobus
    solfataricus
    2287    		 20179341 Assembly1
    protein:A:2~93 157~160,162~168,207~211,215~21
    7
    1307 3ktw:D
    (3.2Å)
    		 95 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DE8C RF01857
    RF00169    		 Saccharolobus
    solfataricus
    2287    		 20179341 Assembly2
    protein:B:2~94 157~160,163~168,207~211,215~21
    7
    1308 3l3c:P
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly1
    protein:A:7~96 13~14,17B,17C,17D,17E,17F,17G,
    17H,17L
    1309 3l3c:Q
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly2
    protein:B:7~96 2~3,17B,17C,17D,17E,17F,17G,17
    H,17K,17L,110
    1310 3l3c:R
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly3
    protein:C:7~96 2~3,17B,17C,17D,17E,17F,17G,17
    H,17K,17L
    1311 3l3c:S
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly4
    protein:D:7~96 3,17B,17C,17D,10,17F,17G,17H,1
    7K,17L
    1312 3lqx:B
    (1.93Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DD2B RF00169 synthetic
    construct
    32630    		 12269812 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    1313 3lrn:C
    (2.6Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20637642 Assembly1
    protein:A:803~923 0~1
    1314 3lrn:D
    (2.6Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20637642 Assembly1
    protein:B:803~923 0~1
    1315 3lrr:C
    (2.15Å)
    		 12 N/A URS000080DF8A N/A synthetic
    construct
    32630    		 20637642 Assembly1
    protein:A:803~923 1~2
    1316 3lrr:D
    (2.15Å)
    		 12 N/A URS000080DF8A N/A synthetic
    construct
    32630    		 20637642 Assembly1
    protein:B:803~923 1~2
    1317 3lwo:D
    (2.855Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20615421 Assembly1
    protein:A:11~337 3~5,17~18,39~44,52~53,55~58
    protein:B:3~55 19~20
    protein:C:4~123 22~25,27,29~31
    1318 3lwo:E
    (2.855Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20615421 Assembly1
    protein:A:11~337 9~12
    1319 3lwp:D
    (2.5Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20615421 Assembly1
    protein:A:11~337 3~5,17~18,39~45,52~53,55~58
    protein:B:3~55 19~20
    protein:C:4~123 22~25,27,29~31
    1320 3lwp:E
    (2.5Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20615421 Assembly1
    protein:A:11~337 9~10,12
    1321 3lwq:D
    (2.678Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:12~337 3~5,18,39~45,52~53,55~58
    protein:B:4~54 19~20
    protein:C:5~123 22,24~25,27,29~31
    1322 3lwq:E
    (2.678Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:12~337 9~10
    1323 3lwr:D
    (2.203Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:11~337 3~5,17~18,39~45,52~58
    protein:B:3~55 19~20
    protein:C:4~123 22~25,27,29~31
    1324 3lwr:E
    (2.203Å)
    		 12 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:11~337 9,11~12
    1325 3lwv:D
    (2.499Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:11~337 3~5,18,39~41,43~44,52~58
    protein:B:3~55 19~20
    protein:C:4~123 22~25,27,29~31
    1326 3lwv:E
    (2.499Å)
    		 11 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    protein:A:11~337 9,12
    1327 3m3y:R
    (3.18Å)
    		 11 N/A URS000080DF50 N/A synthetic
    construct
    32630    		 20448203 Assembly1
    protein:A:3~1445 1,10~11
    protein:B:20~1224 5,9~10
    1328 3m4o:R
    (3.57Å)
    		 10 N/A URS000080E349 N/A synthetic
    construct
    32630    		 20448203 Assembly1
    protein:A:3~1445 1,10
    protein:B:20~1224 6,8~10
    1329 3moj:A
    (2.902Å)
    		 69 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2AC RF02541
    RF02540    		 Escherichia
    coli
    562    		 20673833
    16611943    		 Assembly1
    protein:B:404~478 2548,2553~2557,2569~2571
    1330 3mqk:D
    (2.8Å)
    		 13 N/A URS000080E2B6 N/A synthetic
    construct
    32630    		 21149572 Assembly1
    protein:A:11~338 12~17
    1331 3mum:R
    (2.9Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080DD5D RF03167
    RF01051    		 Vibrio
    cholerae
    666    		 20690679 Assembly1
    protein:P:7~93 661~666,75
    1332 3mur:R
    (3.0Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E118 RF03167
    RF01051    		 Vibrio
    cholerae
    666    		 20690679 Assembly1
    protein:P:7~96 61,63,660~666,75
    1333 3mut:R
    (3.0Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080DF93 RF01051 Vibrio
    cholerae
    666    		 20690679 Assembly1
    protein:P:7~96 61,63,662~666,75
    1334 3muv:R
    (3.2Å)
    		 91 GO:0035438 (F) cyclic-di-GMP binding URS000080DF93 RF01051 Vibrio
    cholerae
    666    		 20690679 Assembly1
    protein:P:7~96 61~63,662~666,75
    1335 3mxh:R
    (2.3Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E2D1 RF03167
    RF01051    		 Vibrio
    cholerae
    666    		 20690679 Assembly1
    protein:P:7~93 660~666,75
    1336 3ncu:C
    (2.55Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 20581823 Assembly1
    protein:A:804~923 1~3
    protein:B:804~923 9~10
    1337 3ncu:D
    (2.55Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 20581823 Assembly1
    protein:A:804~923 9~10,12
    protein:B:804~923 1~3
    1338 3ndb:M
    (3.0Å)
    		 136 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E28C RF01857 Methanocaldococcus
    jannaschii
    DSM
    2661
    243232    		 21336278 Assembly1
    protein:A:1~87 157~160,162~167,206~209,216
    protein:B:2~455 195~196,203~206,218~221
    1339 3nmu:D
    (2.729Å)
    		 34 N/A URS000080E0DB N/A Pyrococcus
    furiosus
    2261    		 20864039 Assembly1
    protein:A:8~373 13,15,29~34
    protein:G:4~124 14~15,25~28
    1340 3nmu:E
    (2.729Å)
    		 34 N/A URS000080E0DB N/A Pyrococcus
    furiosus
    2261    		 20864039 Assembly2
    protein:B:8~373 12~15,18,29~34
    protein:C:4~124 14~16,25~28
    1341 3nmu:I
    (2.729Å)
    		 13 N/A URS000080E0A7 N/A synthetic
    construct
    32630    		 20864039 Assembly1
    protein:A:8~373 1~2
    protein:G:4~124 4~5
    1342 3nmu:K
    (2.729Å)
    		 12 N/A URS000080E0A7 N/A synthetic
    construct
    32630    		 20864039 Assembly2
    protein:C:4~124 4~5
    1343 3nnh:E
    (2.7501Å)
    		 11 N/A URS000080E207 N/A Homo
    sapiens
    9606    		 20947024
    M112_0.6

    M108_0.6    		 Assembly1
    protein:A:14~99 3~7,9~10
    protein:C:14~98 8~11
    1344 3nnh:F
    (2.7501Å)
    		 11 N/A URS000080E207 N/A Homo
    sapiens
    9606    		 20947024 Assembly2
    protein:B:14~99 8~10
    protein:D:14~100 2~6
    1345 3nvi:E
    (2.709Å)
    		 24 N/A URS000080DE0F N/A Pyrococcus
    furiosus
    DSM
    3638
    186497    		 20864039 Assembly1
    protein:A:127~373 2~4,10,12,15,19~25
    protein:B:4~124 4~6,17~19
    1346 3nvi:F
    (2.709Å)
    		 24 N/A URS000080DE0F N/A Pyrococcus
    furiosus
    DSM
    3638
    186497    		 20864039 Assembly1
    protein:C:127~373 3~4,15,19~25
    protein:D:4~124 4~6,17~19
    1347 3nvk:K
    (3.209Å)
    		 24 N/A URS000080E0DB N/A synthetic
    construct
    32630    		 20864039 Assembly1
    protein:A:8~370 3,5~6,17,21~24
    protein:E:4~124 6~7,18~20
    1348 3nvk:L
    (3.209Å)
    		 24 N/A URS000080E0DB N/A synthetic
    construct
    32630    		 20864039 Assembly1
    protein:F:8~370 4~6,17,21~24
    protein:H:4~124 6~8,18~20
    1349 3o3i:A
    (2.801Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    protein:X:276~393 11~14
    protein:X-2:276~393 1~3
    1350 3o6e:A
    (2.904Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    protein:X:277~393 11~14
    protein:X-2:277~393 1~3
    1351 3o7v:A
    (2.1Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    protein:X:277~393 11~14
    protein:X-2:277~393 1~3
    1352 3og8:C
    (2.4Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20961956 Assembly1
    protein:A:803~928 1~2,4
    protein:B:801~928 7,11,14
    1353 3og8:D
    (2.4Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20961956 Assembly1
    protein:A:803~928 7,14
    protein:B:801~928 1~2,4
    1354 3oij:C
    (3.0Å)
    		 14 N/A URS000080DE57 N/A synthetic
    construct
    32630    		 21087996 Assembly1
    protein:A:28~252 5~11
    protein:B:28~252 6,11~12
    1355 3oij:D
    (3.0Å)
    		 14 N/A URS000080DE57 N/A synthetic
    construct
    32630    		 21087996 Assembly1
    protein:A:28~252 6,11~12
    protein:B:28~252 5~11
    1356 3oin:C
    (1.9Å)
    		 14 N/A URS000080DE57 N/A Saccharomyces
    cerevisiae
    4932    		 21087996
    386    		 Assembly1
    protein:A:28~252 5~12
    protein:B:28~252 5~7,11~13
    1357 3ol6:B
    (2.5Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1358 3ol6:C
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695,697~701
    1359 3ol6:F
    (2.5Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1360 3ol6:G
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695~701
    1361 3ol6:J
    (2.5Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~606
    1362 3ol6:K
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695~701
    1363 3ol6:N
    (2.5Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~606
    1364 3ol6:O
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695~701
    1365 3ol7:B
    (2.7Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1366 3ol7:C
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695,697~702
    1367 3ol7:F
    (2.7Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1368 3ol7:G
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695,697~702
    1369 3ol7:J
    (2.7Å)
    		 16 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~606
    1370 3ol7:K
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 697~702
    1371 3ol7:N
    (2.7Å)
    		 16 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~606
    1372 3ol7:O
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695,697~702
    1373 3ol8:B
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~604,606~607
    1374 3ol8:C
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695,697~702
    1375 3ol8:F
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~604,606~607
    1376 3ol8:G
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695,697~702
    1377 3ol8:J
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~607
    1378 3ol8:K
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 697~702
    1379 3ol8:N
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~607
    1380 3ol8:O
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 697~702
    1381 3ol9:B
    (2.25Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1382 3ol9:C
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695,697~702
    1383 3ol9:F
    (2.25Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1384 3ol9:G
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695,697~702
    1385 3ol9:J
    (2.25Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~607
    1386 3ol9:K
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695,697~702
    1387 3ol9:N
    (2.25Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~607
    1388 3ol9:O
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695,697~702
    1389 3ola:B
    (2.55Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1390 3ola:C
    (2.55Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695~702
    1391 3ola:F
    (2.55Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1392 3ola:G
    (2.55Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695~702
    1393 3ola:J
    (2.55Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~606
    1394 3ola:K
    (2.55Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695~701
    1395 3ola:N
    (2.55Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~606
    1396 3ola:O
    (2.55Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695~701
    1397 3olb:B
    (2.41Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1398 3olb:C
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 696~701
    1399 3olb:F
    (2.41Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1400 3olb:G
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 696~701
    << < 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.