SEQ2FUN

FURNA
Download all results in tab-seperated text for 17863 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1401 3ol8:O
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 697~702
    1402 3ol9:B
    (2.25Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1403 3ol9:C
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695,697~702
    1404 3ol9:F
    (2.25Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1405 3ol9:G
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695,697~702
    1406 3ol9:J
    (2.25Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~607
    1407 3ol9:K
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695,697~702
    1408 3ol9:N
    (2.25Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~607
    1409 3ol9:O
    (2.25Å)
    		 15 N/A URS000080E0FE N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695,697~702
    1410 3ola:B
    (2.55Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1411 3ola:C
    (2.55Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 695~702
    1412 3ola:F
    (2.55Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1413 3ola:G
    (2.55Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 695~702
    1414 3ola:J
    (2.55Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~606
    1415 3ola:K
    (2.55Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695~701
    1416 3ola:N
    (2.55Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~606
    1417 3ola:O
    (2.55Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695~701
    1418 3olb:B
    (2.41Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 598~606
    1419 3olb:C
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    protein:A:1~461 696~701
    1420 3olb:F
    (2.41Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 598~606
    1421 3olb:G
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    protein:E:1~461 696~701
    1422 3olb:J
    (2.41Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 598~607
    1423 3olb:K
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    protein:I:1~461 695~701
    1424 3olb:N
    (2.41Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 598~607
    1425 3olb:O
    (2.41Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    protein:M:1~461 695~701
    1426 3oto:A
    (3.69Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    HB8
    300852    		 20962038 Assembly1
    protein:B:6~240 828,830~831,841,1073~1074,1100
    ~1104,1158
    protein:C:2~207 421,532,1055~1060,1106~1109,11
    11~1112,1189~1193,1196,1205~12
    06
    protein:D:2~209 8,401~413,425~430,436~437,490,
    508~509,511~512,541~547,613,61
    9~620
    protein:E:5~154 6~10,15~16,18~19,559,921~923,1
    073~1074,1077~1081,1192,1398
    protein:F:1~101 673~674,710~711,737~738
    protein:G:2~156 932~933,935,938~940,1092,1239~
    1241,1290~1292,1297~1298,1346,
    1350~1351,1372~1380,1539
    protein:H:1~138 586~587,589~591,597~600,640~64
    3,653,825~826,828,860,875,877~
    878
    protein:I:2~128 1117~1119,1128,1130~1131,1147~
    1149,1177~1180,1186~1188,1232~
    1233,1249~1251,1291,1342~1351,
    1367~1373
    protein:J:3~100 963~964,969,972~973,1059~1061,
    1123~1125,1150~1153,1189,1197~
    1199,1253~1254,1279~1280,1366~
    1368
    protein:K:11~129 675~676,683~686,688~692,694~69
    5,704,706~708,716,718,778~780,
    797,1523,1525
    protein:L:5~128 33~37,49,241,302,362~363,500~5
    03,519~523,527~529,537~539,551
    ~553,562~564,567~568,585,879~8
    81,910~911,913
    protein:M:2~116 947~953,1225~1229,1295~1296,13
    02,1306~1310,1321,1328~1330
    protein:N:2~61 973~976,979~981,983,1047~1049,
    1114~1115,1188,1202~1203,1217,
    1219,1316~1317,1358~1360,1369
    protein:O:2~89 579~581,656~659,667~668,728,73
    0,739~742,750~755,764~765
    protein:P:1~83 43~44,110,112,135~137,228~229,
    310,375~377,390~393,449~450,45
    2,463,474,608,617,624~627
    protein:Q:2~105 127~130,190E,234~238,246~247,2
    53~256,264~267,275~280,564,582
    ~586,760~761
    protein:R:16~88 664,673~674,718~721,734~736,83
    5~836
    protein:S:2~81 958,986,1014~1015,1220~1223,12
    25~1227,1310~1316,1318,1320~13
    22
    protein:T:8~106 61,103,107~108,132,177,185~188
    ,190L,191~194,196,259,261~263,
    322~325,332~333,1454~1455,1459
    protein:U:2~25 1235~1236,1242~1244,1267,1269~
    1270,1286,1304~1305,1325~1329,
    1353
    1427 3ouy:C
    (2.69Å)
    		 35 N/A URS000080E1A6 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:A:1~441 1~3,15,21~24,31~35
    1428 3ouy:D
    (2.69Å)
    		 35 N/A URS000080E1A6 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:B:1~437 1~3,15,21~24,31~35
    1429 3ov7:C
    (3.0Å)
    		 34 N/A URS000080DF12 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:A:1~441 1~3,14~15,21~24,31~34
    1430 3ov7:D
    (3.0Å)
    		 34 N/A URS000080DF12 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:B:1~437 1~3,15,21~23,31~34
    1431 3ova:C
    (1.98Å)
    		 34 N/A URS000080DF12 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:A:3~437 1~2,14~15,21~24,31~34
    1432 3ovb:C
    (1.95Å)
    		 35 N/A URS000080E1A6 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:A:1~441 1~3,15,21~23,31~35
    1433 3ovb:D
    (1.95Å)
    		 35 N/A URS000080E1A6 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:B:1~437 1~3,15~16,21~23,31~35
    1434 3ovs:C
    (2.8Å)
    		 34 N/A URS000080DF12 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:A:1~441 1~3,14~15,21~23,31~34
    1435 3ovs:D
    (2.8Å)
    		 34 N/A URS000080DF12 N/A synthetic
    construct
    32630    		 21071662 Assembly1
    protein:B:1~437 1~3,15,21~23,31~34
    1436 3ow2:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF99 RF02540 Haloarcula
    marismortui
    2238    		 N/A Assembly1
    protein:A:1~237 781~784,820,857,866~867,870~87
    5,877,886,1460,1652~1654,1844~
    1848,1850~1857,1860~1863,1868~
    1884,1898~1900,1939~1944,2114,
    2123,2125,2248~2250,2271~2273,
    2630,2632~2634
    protein:B:1~337 835~836,1234,1732~1736,1751,17
    53~1754,2034~2036,2038~2039,20
    65~2066,2090~2094,2545~2549,25
    80~2582,2591,2606~2607,2609~26
    10,2613~2616,2653~2657,2669~26
    74,2678~2679,2681~2682,2713~27
    19,2756~2757,2759~2760,2765~27
    68,2806~2810,2818~2822,2837~28
    40,2842~2843,2846~2848,2851~28
    52,2861~2862,2897~2898
    protein:C:1~246 34~35,326~330,338~339,447~452,
    454~455,457~459,474~477,641,64
    3~647,656~657,663~664,670~672,
    674~678,749~751,762,764~766,89
    0,894,1305~1311,1342~1344,1348
    ,1352,1359~1363,2100~2101
    protein:D:10~174 2333,2336~2338,2345~2349,2351
    protein:E:1~172 1140,2561,2565~2567,2690,2694~
    2695,2704~2705,2778,2780~2784,
    2792~2793,2796
    protein:F:1~119 243~246,261~264
    protein:G:12~73 1150~1151,1210~1211
    protein:H:1~167 964,966~968,1002~1008,1054~105
    6,1133~1135,2282~2283,2309~231
    1,2494~2495,2501~2504,2518~252
    2,2530~2531
    protein:I:4~145 533,615,1102~1104,1109,1117~11
    19,1235~1236,1241~1244,1246~12
    47,2065,2081~2083,2676,2814~28
    15
    protein:J:1~132 1742~1745,1747,1992~1994,2035~
    2037,2546,2582~2583,2596~2598,
    2601,2686~2687,2708~2709,2711~
    2712,2720~2721,2762~2764
    protein:K:1~150 164~166,196,215~216,220~223,41
    7,623~625,644~645,687~688,692~
    694,697~700,745,755,757~759,76
    2,897~905,918~920,924~927,1041
    ~1042,1294~1300,1302,1353~1354
    ,2430~2432,2441~2444,2452~2454
    ,2466~2467
    protein:L:1~194 133~136,145,154~161,170~172,17
    5,181~184,187~195,206,227,240,
    242~244,251,261,263~266,378~38
    1,383,388~389,391~394,398~404,
    407,409,417,431~433,435,770~77
    1,869,1467,1469~1472,1864,2121
    ~2123,2131~2132,2244~2245,2262
    ~2264,2266,2273~2275
    protein:M:1~186 1010,2353,2368,2413~2416
    protein:N:1~115 654~657,659~660,700~701,708~71
    1,719,721~722,745~746,936,1276
    ~1278
    protein:O:1~143 792~793,800~802,815~817,1387~1
    388,1396~1399,1500~1502,1541,1
    548~1549,1565~1566,1593~1598,1
    704~1708,1715~1720,1760~1762,1
    784~1790,1793~1795,1798,1800~1
    802,1813,1817,2735~2739
    protein:P:1~95 949~951,1008,1018~1020,2295~23
    00,2304~2307,2363~2367,2370,23
    86~2390,2392~2395,2403~2404,24
    23~2424
    protein:Q:1~150 11~12,19~22,492,494,499~501,51
    0,523~525,840~841,843~844,1369
    ~1372,1428,1431,1689~1690,2048
    ~2055,2087~2088,2658~2660,2832
    ,2841~2843
    protein:R:1~81 67,1418,1444~1448,1507~1508,16
    74~1676
    protein:S:1~119 30~32,79~82,87,97,99~101,303~3
    04,306~309,315~318,332~336,342
    ~344,446~448,483~484,486~489
    protein:T:4~56 1810,2721,2755,2864~2866,2890
    protein:U:1~65 55~57,68~69,72~74,91~92,96
    protein:V:1~154 567~568,588,943~946,1024~1025,
    1066~1068,1084,1086~1087,1095~
    1099,1262~1264,1285,1287~1288
    protein:W:7~88 1380~1386,1399~1401,1730~1731,
    2043~2044,2726~2727,2744,2835,
    2856~2857,2895~2896,2904~2905
    protein:X:95~236 320,521,537~541,551~554,594~59
    5,617~618,620~623,628~629,637~
    638,905~908,1072~1075,1089~109
    0,1266~1269,1293,1311~1313,131
    5~1317,1324~1331,1333~1335,134
    3,1356,2059
    protein:Y:10~82 796~797,818~821,1601,1651~1652
    ,1654,1771~1773,1829,1885~1887
    ,2018
    protein:Z:1~56 51~52,111~113,119~121,148~149,
    178~179,470~473,772~777,779,84
    5,863~864,881~882,890~892,894,
    1414~1415,1473,1687~1688,1694~
    1695,1836~1837
    protein:1:1~49 53~54,58~61,86~88,120~123,462,
    466,513~514,1414~1415,1417~141
    9,1438~1439,1486,1675~1677,168
    4~1685,1691
    protein:2:1~92 170,218~220,389~390,395~396,73
    5,1922~1925,2120~2121,2317~232
    0,2378~2379,2381~2382,2407~240
    9,2427~2428,2432~2438,2450~245
    2,2457~2462,2468
    1437 3ow2:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 N/A Assembly1
    protein:D:10~174 3017,3029~3030,3040~3042,3044~
    3046,3053~3054,3056~3059
    protein:H:1~167 3092~3093
    protein:M:1~186 3004~3008,3010~3011,3013~3014,
    3026~3028,3034~3037,3046~3052,
    3068,3114,3117~3119
    protein:P:1~95 3008~3009,3011
    protein:V:1~154 3084~3088,3097~3099
    1438 3p49:A
    (3.55Å)
    		 169 GO:0006545 (P) glycine biosynthetic pr... URS000080DF90 RF00504 Fusobacterium
    polymorphum
    76857    		 21439473 Assembly1
    protein:B:6~97 724~729,733
    1439 3pio:X
    (3.2473Å)
    		 2657 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    protein:A:21~273 704~707,742,777,786~787,791~79
    5,797,1383,1506~1507,1516~1517
    ,1582~1585,1764,1779~1783,1787
    ~1788,1790~1791,1794,1796,1804
    ~1805,1808~1813,1816~1820,1835
    ,1884~1885,1954,2056,2069,2200
    ~2202,2205~2206,2218,2569~2570
    ,2577~2579
    protein:B:1~205 583,757,1141,1671~1676,1687~16
    88,1692,1976~1977,2015,2033~20
    36,2485,2490~2493,2550~2551,25
    53~2554,2557~2559,2597~2600,26
    12,2614~2616,2658~2661,2703~27
    04,2709~2711,2751~2753,2764~27
    67,2786~2787,2795~2798,2805~28
    06,2809
    protein:C:2~195 37,39,331~332,334,453~456,460~
    464,480,595~599,610~611,616~61
    8,626,629,631,672~673,682,684,
    687~688,814,1216,1218,1257,126
    0~1261,1268~1271,2042~2044,242
    3
    protein:D:3~179 2278,2282~2285,2288~2295
    protein:E:5~175 2509~2510,2638,2646~2647,2723~
    2725,2727~2728,2737~2738
    protein:F:74~136 1069~1071,1074~1076,1087~1088,
    1090~1091,1099
    protein:G:30~171 7~8,538~539,547,566~567,1006,1
    016~1018,1023,1033,1142~1143,1
    148~1152,2494,2619,2621,2760
    protein:H:1~134 1682~1685,1935,1978~1979,2540~
    2543,2545,2627~2629,2652~2655,
    2662~2664
    protein:I:11~144 173,228,575~577,596,607~609,61
    3~615,636~638,642~644,647~648,
    673~675,679,683~684,819~820,82
    4~826,844~846,953~954,1203,121
    8,1256,2371~2372,2394~2395,240
    7~2408
    protein:J:6~141 876~877,883~884,918~919,921~92
    3,964~969,971,1041,1086,2229~2
    230,2255~2257,2438,2446,2462~2
    464,2473~2475
    protein:K:3~115 1288~1292,1300~1301,1468~1470,
    1666~1668,1985,1992,2669,2680~
    2681,2685~2688,2693,2702,2792,
    2795~2797,2813~2815,2825~2827,
    2844,2848,2855~2857
    protein:L:8~111 2272~2274,2313,2355,2357
    protein:M:2~109 1744~1745,2661,2698~2699,2804,
    2822~2824,2842,2850~2851
    protein:N:2~118 17~19,29,456~457,459,542~545,5
    63,570,572~573,589~590,592~593
    ,825,986,1005~1008,1019~1022,1
    162~1164,1166~1167,1229~1230,1
    261,1264~1265,2002,2004
    protein:O:5~98 573~574,827~828,984,986,1001,1
    003~1004,1007,1172~1173,1201~1
    202,1234~1238
    protein:P:8~133 23~26,319,497~501,503~507,511~
    512,514,518,527~529,759~761,76
    4,1224,1246~1247,1274~1275,127
    9,1335~1337,1630~1631,1992~199
    3,1995~1997
    protein:Q:2~94 57,63~64,1324~1325,1348,1350~1
    355,1404~1406,1412,1613~1616,1
    618
    protein:R:4~113 34,83~85,100,308~310,320~321,3
    37~340,347~349,489,491,494
    protein:S:1~175 1051,1129
    protein:T:12~85 869~871,933~935,2240~2241,2250
    ~2251,2256~2258,2310,2315,2331
    ~2335,2343~2344,2363,2366
    protein:U:8~79 164~166,177~178,393~394,399~40
    1,409~413,1377,1801,2064,2074,
    2209~2210,2212,2374~2375,2411
    protein:V:2~66 60,71~72,75~76,94~95,109
    protein:W:1~55 863,940~943,980,999~1000,1168~
    1169,1198
    protein:Z:3~59 14~17,526~527,760,1275~1277,12
    79,1998~2002,2004,2028~2029,25
    56,2590,2592,2594,2603,2790~27
    91,2858~2862
    protein:1:2~54 2262~2265,2323~2327,2349~2350,
    2369,2378~2379,2397,2400
    protein:2:1~46 54,122~124,469~470,475~479,695
    ,697,699~700,765,783,801,1322~
    1323,1628~1629,1635~1636
    protein:3:6~64 227,603,659~661,847~848,2327~2
    329,2338~2341,2362,2369~2372,2
    399~2401
    protein:4:1~37 1041~1045,1135~1136,2446,2505~
    2507,2518,2722~2723,2733~2737
    1440 3pio:Y
    (3.2473Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    protein:D:3~179 33,43~45,47,57~59
    protein:J:6~141 80,92~93
    protein:L:8~111 8~9,11,30~31,39~40,49~53,116~1
    19
    protein:S:1~175 75,77~78,94,106~107
    protein:T:12~85 13~14
    1441 3pip:X
    (3.45Å)
    		 2644 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    protein:A:21~273 704~707,742,777,786,791~795,79
    7,1383,1506~1507,1516~1517,158
    2~1585,1779~1783,1787~1788,179
    0~1791,1794,1796~1797,1804~180
    6,1808,1810~1813,1816~1820,183
    5,1884~1886,1955,2069,2186~218
    7,2200~2202,2205~2206,2218,256
    9~2570,2577~2579
    protein:B:1~205 583,756,1141,1671~1676,1692,19
    76,1980,2033~2038,2485,2490~24
    92,2550~2551,2553~2554,2557~25
    59,2590,2597~2600,2612,2614~26
    17,2656,2658~2662,2703~2704,27
    09~2711,2713~2714,2751~2753,27
    64~2767,2786~2787,2795~2798,28
    05~2806
    protein:C:2~195 37~40,331~334,452,454~456,460~
    463,480,594,596~597,599,610~61
    1,617~618,626~627,629~630,673,
    682,684~688,812,814,1216,1257,
    1259~1261,1268~1270,2042~2044,
    2423
    protein:D:3~179 2278,2282~2285,2288~2295
    protein:E:5~175 1046,2508~2510,2632,2636~2638,
    2646~2647,2724~2728,2731,2737~
    2738
    protein:F:74~136 1069~1071,1073~1076,1088,1090~
    1092,1099
    protein:G:30~171 6~7,538~539,547~548,566~567,10
    06,1016~1018,1023,1033,1142~11
    43,1148~1151,2023,2494,2618~26
    21,2760
    protein:H:1~134 1682~1686,1935,1978~1979,2540~
    2543,2627~2628,2652~2655,2662~
    2664
    protein:I:11~144 221~222,575~577,596,607~609,61
    4~615,636~638,642~643,647~648,
    673~676,678~680,684,817~821,82
    4~827,844~846,954,1203~1204,12
    17~1218,1256,1258,2338,2371~23
    72,2383,2394~2395,2407,2427
    protein:J:6~141 876,883~884,886,917~923,964~96
    9,971,2254~2257,2446~2447,2462
    ~2464,2473~2475
    protein:K:3~115 1288~1292,1298,1300~1301,1469~
    1470,1666~1668,1985,1992,2669,
    2680~2681,2685~2687,2693,2702,
    2791~2792,2795,2797,2813~2815,
    2825~2827,2848,2855~2857
    protein:L:8~111 2271~2275,2313,2355~2357
    protein:M:2~109 1744~1745,2661,2663,2698~2699,
    2804,2820,2822~2824,2842,2850~
    2851
    protein:N:2~118 17~19,28~29,456~458,461,525,54
    2~544,546,570,572~573,589~593,
    825,986~987,1004~1008,1020~102
    2,1162~1167,1213,1228,1230,126
    1,1264~1265,2002~2004
    protein:O:5~98 573~574,827~828,1003~1004,1171
    ~1173,1201~1202,1234~1239
    protein:P:8~133 24~25,319,496~498,500~507,511~
    514,518,528~530,759~761,764,12
    24,1247,1274~1275,1279,1335~13
    37,1630~1631,1992~1997
    protein:Q:2~94 57,63~64,1324,1348~1349,1351~1
    355,1404,1412,1613~1615,1618
    protein:R:4~113 34,83~86,307~309,320~321,337~3
    38,340,347~349,489,491~494
    protein:S:1~175 888~889,1051,1129
    protein:T:12~85 869~871,934~935,2236~2237,2240
    ~2241,2250,2257~2258,2309~2310
    ,2315,2331~2335,2342~2345,2363
    ,2365~2366
    protein:U:8~79 166,393~394,400~401,409~411,41
    3,1378,2063~2065,2074,2183,220
    9~2210,2212
    protein:V:2~66 60,71~72,75~76,94~95,109
    protein:W:1~55 862~865,940~943,980~981,999~10
    00,1169,1198
    protein:Z:3~59 14~17,526~527,760,1275~1277,12
    79,1998~2000,2003~2004,2028~20
    30,2556,2590~2592,2594,2790~27
    91,2858~2862
    protein:1:2~54 2262~2265,2323~2326,2349~2351,
    2369,2378~2379,2397~2398,2400~
    2401
    protein:2:1~46 54,116,122~124,469,476~478,696
    ~697,699~700,765,783~784,801~8
    02,1322~1323,1381,1628~1629,16
    35~1636
    protein:3:6~64 219~220,222~224,226~229,640,65
    9~661,847,2327~2328,2338~2341,
    2370~2373,2397~2401
    protein:4:1~37 1041~1045,1135~1136,2444~2447,
    2456,2505~2507,2518,2722,2735~
    2737
    1442 3pip:Y
    (3.45Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    protein:D:3~179 32~33,43~47,56~59
    protein:J:6~141 92~94
    protein:L:8~111 8~11,30~31,39~40,49~53,116~117
    protein:S:1~175 75,77~78,94,106~108
    1443 3pla:G
    (3.15Å)
    		 35 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 24,27~29,35
    protein:B:3~377 12~18,20~23
    protein:C:7~128 30~31
    protein:D:7~128 10~12
    protein:E:5~231 23~27
    1444 3pla:H
    (3.15Å)
    		 32 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 12~23
    protein:B:3~377 24,27~29
    protein:C:7~128 10~12
    protein:D:7~128 29~31
    protein:F:5~231 24~27
    1445 3pla:I
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 1~2
    protein:B:3~377 8~10
    protein:E:5~231 2~6
    1446 3pla:J
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 8~10
    protein:F:5~231 2~6
    1447 3pla:N
    (3.15Å)
    		 31 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly2
    protein:K:3~377 27~29
    protein:L:7~128 30~31
    protein:M:5~231 24~27
    protein:K-2:3~377 8,12~23
    protein:L-2:7~128 10~12
    1448 3pla:O
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly2
    protein:M:5~231 2~7
    protein:K-2:3~377 7~10
    1449 3po2:P
    (3.3Å)
    		 15 N/A URS000080E1FB N/A synthetic
    construct
    32630    		 21346759 Assembly1
    protein:A:3~1454 11,13~17
    protein:B:20~1224 10,12
    1450 3ptx:R
    (3.0Å)
    		 45 N/A URS000080E1AF N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~36
    protein:B:2~422 20~27
    protein:C:2~422 11~18
    protein:D:2~422 2~9
    protein:E:2~422 38~45
    1451 3pu0:R
    (3.09Å)
    		 45 N/A URS000080E318 N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~36
    protein:B:2~422 20~27
    protein:C:2~422 11~18
    protein:D:2~422 2~10
    protein:E:2~422 38~45
    1452 3pu1:R
    (3.14Å)
    		 45 N/A URS000080E13B N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~33,35~36
    protein:B:2~422 19~24,26~27
    protein:C:2~422 11~18
    protein:D:2~422 2~9
    protein:E:2~422 38~45
    1453 3pu4:R
    (3.0Å)
    		 45 N/A URS000080E17E N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~33,35~36
    protein:B:2~422 20~24,26~27
    protein:C:2~422 11~15,17
    protein:D:2~422 2~6,8~10
    protein:E:2~422 38~40,42,44~45
    1454 3q1q:B
    (3.8Å)
    		 347 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E347 RF00010 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    protein:A:6~117 18~22,267,302~308,320~321
    1455 3q1r:B
    (4.21Å)
    		 347 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E347 RF00010 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    protein:A:6~117 18~22,267,302~304,306~308,320~
    321
    1456 3qjj:Q
    (2.8049Å)
    		 12 N/A URS000080E2BC N/A synthetic
    construct
    32630    		 N/A Assembly2
    protein:A:-3~239 1,3~12
    1457 3qjj:R
    (2.8049Å)
    		 12 N/A URS000080E2BC N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:B:0~239 1~11
    1458 3qjl:R
    (2.7009Å)
    		 12 N/A URS000080DF86 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:0~239 5~12
    protein:B:0~239 1~7
    1459 3qjl:X
    (2.7009Å)
    		 12 N/A URS000080DF86 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:0~239 1~7,9
    protein:B:0~239 5~12
    1460 3qrq:B
    (3.194Å)
    		 19 N/A N/A N/A N/A 21572444 Assembly1
    protein:A:-1~211 4~7
    1461 3qrr:B
    (3.099Å)
    		 18 N/A URS00021ED985 N/A synthetic
    construct
    32630    		 21572444 Assembly1
    protein:A:-1~211 4~7
    1462 3qsy:D
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 23291527 Assembly1
    protein:A:1~415 1~4,11,24~25,71~76
    1463 3r1h:C
    (3.15Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly1
    protein:A:7~98 57,1001,1005~1011,1014~1015
    1464 3r1h:F
    (3.15Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly2
    protein:D:6~98 1001,1005~1011,1014~1015
    1465 3r1l:C
    (3.125Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly1
    protein:A:7~98 57,1001,1006~1011,1014~1015
    1466 3r1l:F
    (3.125Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly2
    protein:D:6~98 57,1001,1005~1011,1014~1015
    1467 3r2c:S
    (1.902Å)
    		 10 N/A URS000080DF91 N/A Aquifex
    aeolicus
    63363    		 21652641 Assembly2
    protein:B:1~137 1~9
    1468 3r2d:R
    (2.199Å)
    		 12 N/A URS000080DF91 N/A Aquifex
    aeolicus
    63363    		 21652641 Assembly1
    protein:J:4~82 8~9
    1469 3r9w:B
    (2.05Å)
    		 34 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E021 RF01960
    RF01959    		 synthetic
    construct
    32630    		 21646538
    19706445
    10411886    		 Assembly1
    protein:A:0~301 1524~1525,1529~1538
    1470 3r9x:C
    (2.8Å)
    		 35 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE4E RF01959
    RF00177
    RF01960    		 synthetic
    construct
    32630    		 21646538
    19706445
    10411886    		 Assembly1
    protein:A:0~301 1506,1524,1529~1538
    protein:B:13~247 1514,1527
    1471 3rw6:F
    (2.3Å)
    		 62 N/A URS000080DD81 N/A synthetic
    construct
    32630    		 21822283 Assembly2
    protein:B:117~360 13~16,20,30~34,50~51,54
    1472 3rw6:H
    (2.3Å)
    		 62 N/A URS000080DD81 N/A synthetic
    construct
    32630    		 21822283 Assembly1
    protein:A:118~362 11,13~15,32~34,50~51,54
    1473 3siu:C
    (2.626Å)
    		 28 N/A URS000080E193 N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:4~128 34~37,47~48
    protein:B:86~332 36~37,40~42,44~47
    1474 3siu:F
    (2.626Å)
    		 28 N/A URS000080E193 N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:D:4~128 34~37,47~48
    protein:E:86~332 34,36~37,40~41,44~47
    1475 3siv:C
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:1~128 47~48
    protein:B:85~332 44~47
    protein:D:4~128 34~37
    protein:E:86~332 33~34,37,40~42
    1476 3siv:F
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:1~128 34~37
    protein:B:85~332 33~34,36~37,40~42
    protein:D:4~128 47~48
    protein:E:86~332 44~46
    1477 3siv:I
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:G:1~128 47~48
    protein:H:86~332 44~45,47
    protein:J:3~128 34~37
    protein:K:86~332 33,37,40~42
    1478 3siv:L
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:G:1~128 34~37
    protein:H:86~332 32~34,37,40~42
    protein:J:3~128 47~48
    protein:K:86~332 44~45,47
    1479 3sn2:B
    (2.99Å)
    		 29 GO:0010039 (P) response to iron ion URS000080E231 RF02253 Oryctolagus
    cuniculus
    9986    		 22119729
    17185597    		 Assembly1
    protein:A:2~889 8~9,15~20,27~29
    1480 3snp:C
    (2.8Å)
    		 30 GO:0010039 (P) response to iron ion URS000080E11E RF00037 Xenopus
    laevis
    8355    		 17185597
    16511314    		 Assembly1
    protein:A:2~889 7~9,15~20,27~29
    1481 3snp:D
    (2.8Å)
    		 30 GO:0010039 (P) response to iron ion URS000080E11E RF00037 Xenopus
    laevis
    8355    		 17185597
    16511314    		 Assembly2
    protein:B:2~889 7~8,15~20,26~29
    1482 3t1h:A
    (3.11Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177 Thermus
    thermophilus
    HB8
    300852    		 22227389 Assembly1
    protein:B:7~240 812~814,824,1055~1057,1082~108
    3,1086
    protein:C:2~207 416,515,1037~1042,1088~1091,10
    93~1095,1171~1173,1177,1186~11
    87,1238
    protein:D:2~209 8,397~405,407,421~425,432~433,
    474,491~492,494~495,525~530,60
    2~603
    protein:E:5~154 5~10,15~16,18~20,542,898~899,1
    052,1054~1056,1060~1063,1175,1
    378~1379
    protein:F:1~101 653,656~657,719~722
    protein:G:2~156 909~910,912,916~917,1220~1222,
    1272,1279,1327,1331~1332,1354~
    1363,1516
    protein:H:1~138 569~574,581~583,623~627,636,80
    8~809,811,852,854~855
    protein:I:2~128 944~945,947,1099~1101,1110~111
    2,1129~1131,1158~1161,1167~116
    8,1213~1214,1229~1232,1272,132
    3~1331,1349~1355
    protein:J:3~100 940~941,949~950,1041~1043,1105
    ~1107,1132~1135,1170,1179,1235
    ,1260~1262,1348~1350
    protein:K:11~129 658~660,667~669,671~675,677~67
    8,687,689~691,699,701,761~763,
    780,1500~1502
    protein:L:5~128 33~37,297~298,358,484~486,501~
    506,510~512,520~522,535~536,53
    8,545~547,550~551,568,857~858,
    888~889,1394,1467~1469
    protein:M:2~126 924~931,946,1206~1210,1277~127
    8,1283,1288~1291,1309~1311
    protein:N:2~61 950~951,953,956~960,971,1030,1
    042,1096~1097,1167,1183~1184,1
    197,1297~1298,1339~1340,1350~1
    351
    protein:O:2~89 562~563,565,639~640,642~643,64
    9~652,711,713,722~725,733~737,
    747~748
    protein:P:1~83 43~44,103,128~131,222~224,305~
    306,370~372,385~388,443~444,44
    6~447,456~458,591,607~609
    protein:Q:2~105 120~121,124,189,229~233,241~24
    2,248~251,259~260,268,270~275,
    547,568,619,743,873
    protein:R:16~88 646~647,657,701~703,718~719,81
    8~819
    protein:S:2~81 935,955,963,992~993,1200~1204,
    1208,1291~1295,1299~1303
    protein:T:8~106 95~97,100~101,126~127,169~171,
    179~182,196~200,254,256~258,31
    7~320,327~328,1421,1433~1436
    protein:V:2~25 1216~1217,1225,1248~1249,1266~
    1267,1285~1286,1306~1310,1346
    1483 3t1y:A
    (2.8Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177 Thermus
    thermophilus
    HB8
    300852    		 22227389 Assembly1
    protein:B:7~240 812,1055~1057,1083~1086
    protein:C:2~207 416,515,1037~1043,1088~1091,10
    93~1094,1171~1173,1186~1187,12
    38
    protein:D:2~209 8,26,397~407,421~425,432~433,4
    74,479,491~492,494~495,523~529
    ,602~603
    protein:E:5~154 5~10,15~16,18~20,542,898~899,1
    051~1052,1054~1056,1060~1063,1
    173,1175,1380
    protein:F:1~101 656~657,693~694,720~722
    protein:G:2~156 909~910,912,915~917,1221~1222,
    1271~1273,1278~1279,1327,1331~
    1332,1354~1362,1516
    protein:H:1~138 569~573,580~583,623~627,635~63
    6,736,807~809,811,837,852~855
    protein:I:2~128 944~945,1099~1101,1110,1112~11
    13,1129~1131,1158~1161,1167~11
    68,1212~1214,1229~1232,1272,13
    23~1331,1349~1351,1353~1355
    protein:J:3~100 940~941,948~950,1041~1043,1105
    ~1107,1132~1135,1170,1179~1180
    ,1235,1260~1261,1348~1350
    protein:K:11~129 658~660,666~669,671~675,677~67
    8,687,689~691,699~701,760~763,
    781,1500~1502
    protein:L:5~128 33~37,297,358,484~486,501~506,
    509,511~512,520~522,535~536,54
    5~547,550~551,568,857~858,888~
    890,1394,1467~1469
    protein:M:2~126 924~931,946,1206~1211,1277,128
    3,1287~1291,1302,1309~1311
    protein:N:2~61 950~953,956~960,971,994,1030~1
    031,1042,1096~1097,1167~1169,1
    183~1184,1197,1200,1297~1298,1
    339~1340,1350~1351
    protein:O:2~89 562~565,639~643,650~652,711,71
    3,722~725,733~738,747,791
    protein:P:1~83 43~44,103,128~131,223~224,305~
    306,370~372,385~388,443~444,44
    6~447,457~458,591,600,607~608
    protein:Q:2~105 120~121,124,189,229~233,241~24
    2,248~251,259~262,268,270~275,
    547,565~566,568,619,742~744,87
    3~874
    protein:R:16~88 646~647,657,701~703,717~719,81
    8
    protein:S:2~81 934~935,963,992,1200~1204,1206
    ,1208,1291~1296,1299,1301~1303
    protein:T:8~106 61,95~98,100~101,126~127,170~1
    71,179~182,196~201,254~258,317
    ~320,328,1421,1433~1437
    protein:V:2~25 1216~1217,1223,1225,1248~1250,
    1267,1270,1285~1286,1306~1310,
    1346
    1484 3trz:U
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:35~179 5~14
    protein:B:35~179 1,17~21
    1485 3trz:V
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:35~179 1,18~21
    protein:B:35~179 5~14
    1486 3trz:W
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly2
    protein:C:35~179 5~14
    protein:D:35~179 1,17~21
    1487 3trz:X
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly2
    protein:C:35~179 1,18~21
    protein:D:35~179 5~14
    1488 3trz:Y
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly3
    protein:E:35~179 5~14
    protein:F:35~179 1,17~21
    1489 3trz:Z
    (2.9Å)
    		 21 N/A URS000080DDB5 N/A synthetic
    construct
    32630    		 22078496 Assembly3
    protein:E:35~179 1,17~21
    protein:F:35~179 5~14
    1490 3ts0:U
    (2.763Å)
    		 23 N/A URS000080DDFC N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:35~179 4,6~15
    protein:B:35~179 1~2,19~23
    1491 3ts0:V
    (2.763Å)
    		 23 N/A URS000080DDFC N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:35~179 1,20~23
    protein:B:35~179 4,6~15
    1492 3ts2:U
    (2.01Å)
    		 24 N/A URS000080E374 N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:36~179 6~13,15~16
    protein:B:34~179 1,21~24
    1493 3ts2:V
    (2.01Å)
    		 24 N/A URS000080E374 N/A synthetic
    construct
    32630    		 22078496 Assembly1
    protein:A:36~179 1,21~24
    protein:B:34~179 6~16
    1494 3tup:T
    (3.05Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DF1A RF00005 Thermus
    thermophilus
    274    		 22137894 Assembly1
    protein:A:12~415 1,11,25~26,34~39,67,69~70,74
    1495 3u4m:B
    (2.0Å)
    		 80 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E005 RF02541 Thermus
    thermophilus
    274    		 22868771 Assembly1
    protein:A:1~228 2121~2125,2127~2131,2169~2170,
    2173~2179
    1496 3u56:B
    (2.1Å)
    		 80 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E005 RF02541 Thermus
    thermophilus
    274    		 N/A Assembly1
    protein:A:1~228 2108,2121~2130,2169~2171,2174~
    2179
    1497 3ucu:R
    (2.8Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E2D1 RF03167 Vibrio
    cholerae
    666    		 22148472 Assembly1
    protein:P:7~93 61~63,660~666,75
    1498 3ucz:R
    (2.8Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E2D1 RF03167 Vibrio
    cholerae
    666    		 22148472 Assembly1
    protein:P:7~97 62~63,660~666,75
    1499 3ud3:R
    (3.1Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E118 RF03167 Vibrio
    cholerae
    666    		 22148472 Assembly1
    protein:P:7~93 660,662~666,75
    1500 3ud4:R
    (2.7Å)
    		 92 GO:0035438 (F) cyclic-di-GMP binding URS000080E118 RF03167 Vibrio
    cholerae
    666    		 22148472 Assembly1
    protein:P:7~93 62,660~666,75
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.