SEQ2FUN

FURNA
Download all results in tab-seperated text for 17863 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    801 2wwa:G
    (8.9Å)
    		 18 N/A URS000080DD75 N/A Saccharomyces
    cerevisiae
    4932    		 19933108 Assembly1
    protein:J:1~53 1920~1923
    802 2wwb:D
    (6.48Å)
    		 63 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1E8 RF00002 Triticum
    aestivum
    4565    		 19933108 Assembly1
    protein:A:1~476 50~51,77
    protein:K:57~139 60,100
    protein:L:1~127 69~74,83~85,91
    protein:N:1~69 47~49,60~64,66,79~80,86,98
    protein:O:1~37 45~47,50~53,75~76
    803 2wwb:E
    (6.48Å)
    		 34 N/A URS000080DD2D N/A Triticum
    aestivum
    4565    		 19933108 Assembly1
    protein:I:1~153 546~547,556
    protein:L:1~127 530~537,551~553
    804 2wwb:F
    (6.48Å)
    		 25 N/A URS000080E27C N/A Triticum
    aestivum
    4565    		 19933108 Assembly1
    protein:A:1~476 1656~1658,1675~1677
    protein:I:1~153 1662~1668
    protein:J:1~53 1655~1657,1671~1672
    805 2wyy:R
    (10.6Å)
    		 45 N/A URS000080E17E N/A Vesicular
    stomatitis
    Indiana
    virus
    strain
    San
    Juan
    11285    		 20133572 Assembly1
    protein:A:2~422 29~33,35
    protein:C:2~422 20~24,26
    protein:D:2~422 38~42,44
    protein:F:2~422 47~51,53
    protein:H:2~422 56~60,62
    protein:I-9:2~422 29~33,35
    protein:J-9:2~422 20~24,26
    protein:K-9:2~422 38~42,44
    protein:L-9:2~422 47~51,53
    protein:M-9:2~422 56~60,62
    806 2wyy:S
    (10.6Å)
    		 45 N/A URS000080E17E N/A Vesicular
    stomatitis
    Indiana
    virus
    strain
    San
    Juan
    11285    		 20133572 Assembly1
    protein:A-7:2~422 29~33,35
    protein:C-7:2~422 20~24,26
    protein:D-7:2~422 38~42,44
    protein:F-7:2~422 47~51,53
    protein:H-7:2~422 56~60,62
    protein:I:2~422 29~33,35
    protein:J:2~422 20~24,26
    protein:K:2~422 38~42,44
    protein:L:2~422 47~51,53
    protein:M:2~422 56~60,62
    807 2x7n:A
    (11.8Å)
    		 28 N/A URS000080DD98 N/A Saccharomyces
    cerevisiae
    4932    		 20356839
    103    		 Assembly1
    protein:B:1~224 2689,2692
    protein:C:1~132 2686~2687,2709~2710
    808 2xd0:G
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly2
    protein:A:1~162 -3~-1,1,12,16~17
    809 2xd0:H
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly3
    protein:B:1~162 -3~-2,0~1,12,17
    810 2xd0:I
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly4
    protein:E:1~162 -3~-2,0~1,12~13,18
    811 2xd0:U
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly6
    protein:X:1~162 -3~-2,0~1,18
    812 2xd0:V
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly1
    protein:Y:1~162 -3~1,12~13,17
    813 2xd0:W
    (3.0Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly5
    protein:Z:1~162 -3~1,12~13,16~17
    814 2xdb:G
    (2.55Å)
    		 36 N/A URS000080E054 N/A Pectobacterium
    atrosepticum
    29471    		 21240270 Assembly1
    protein:A:1~162 -3~1,12,17
    815 2xdd:F
    (3.2Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 19124776 Assembly1
    protein:B:1~162 5~8,21~22,26~32
    protein:E:1~162 -3~1,12,16~17
    816 2xdd:G
    (3.2Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 19124776 Assembly1
    protein:A:1~162 -3~-2,0~1,12,16~17
    protein:E:1~162 5~8,21~22,26~32
    817 2xdd:H
    (3.2Å)
    		 36 N/A URS000080E22E N/A Pectobacterium
    atrosepticum
    29471    		 19124776 Assembly1
    protein:A:1~162 5~8,21~22,27~32
    protein:B:1~162 -3~1,12~13
    818 2xkv:B
    (13.5Å)
    		 96 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E14C RF00169 Escherichia
    coli
    562    		 21151118 Assembly1
    protein:C:23~65 38~40,47~50,63~64
    819 2xli:B
    (2.33Å)
    		 16 N/A URS000080DF27 N/A Pseudomonas
    aeruginosa
    UCBPP-PA14
    208963    		 20829488 Assembly1
    protein:A:-1~187 6~7,9~11,13,18~21
    820 2xlj:B
    (2.6Å)
    		 16 N/A URS000080DF27 N/A Pseudomonas
    aeruginosa
    UCBPP-PA14
    208963    		 20829488 Assembly1
    protein:A:0~187 6~11,13,18~21
    821 2xlk:C
    (1.805Å)
    		 16 N/A URS000080DF27 N/A Pseudomonas
    aeruginosa
    UCBPP-PA14
    208963    		 20829488 Assembly2
    protein:A:0~187 6~14,18~21
    822 2xlk:D
    (1.805Å)
    		 16 N/A URS000080DF27 N/A Pseudomonas
    aeruginosa
    UCBPP-PA14
    208963    		 20829488 Assembly1
    protein:B:-1~187 6~14,16,18~21
    823 2xxa:F
    (3.94Å)
    		 102 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS00003F3490 RF00169 Deinococcus
    radiodurans
    1299    		 21330537 Assembly2
    protein:C:7~431 34,42~45,57~59,83
    protein:D:20~302 10,83,85,94~97
    824 2xxa:G
    (3.94Å)
    		 102 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS00003F3490 RF00169 Deinococcus
    radiodurans
    1299    		 21330537 Assembly1
    protein:A:4~431 34~35,42~45,57~59,83
    protein:B:20~302 10,83,94~97
    825 2y8w:B
    (1.8Å)
    		 20 N/A URS000080DFA4 N/A synthetic
    construct
    32630    		 21572442 Assembly1
    protein:A:-3~211 5~7,14~24
    826 2y8y:B
    (1.44Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly1
    protein:A:-3~211 5~7,16~23
    827 2y9h:B
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly1
    protein:A:-1~211 5~6,16~22
    828 2y9h:D
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly2
    protein:C:1~211 5~7,15~22
    829 2y9h:F
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly3
    protein:E:-1~211 5~7,16~22
    830 2y9h:H
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly4
    protein:G:0~211 5~7,15~22
    831 2y9h:J
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly5
    protein:I:-1~211 5,7,15~23
    832 2y9h:L
    (2.5Å)
    		 19 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly6
    protein:K:0~211 5~6,16~22
    833 2y9h:N
    (2.5Å)
    		 18 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly7
    protein:M:-1~211 5~6,16~22
    834 2y9h:P
    (2.5Å)
    		 18 N/A URS000080E046 N/A synthetic
    construct
    32630    		 21572442 Assembly8
    protein:O:0~211 5,16~17
    835 2yhm:K
    (3.6Å)
    		 70 N/A URS000080E0E1 N/A Escherichia
    coli
    562    		 22102022 Assembly1
    protein:A:1~375 2~8
    protein:B:1~375 9~15
    protein:C:1~375 16~22
    protein:D:1~375 23~29
    protein:E:1~375 30~36
    protein:F:1~375 38~43
    protein:G:1~375 44~50
    protein:H:1~375 51~57
    protein:I:1~375 58~64
    protein:J:1~375 1,65~70
    836 2yjy:C
    (2.598Å)
    		 10 N/A URS000080E04B N/A synthetic
    construct
    32630    		 21653694 Assembly2
    protein:A:828~1164 -1,1~8
    837 2yjy:D
    (2.598Å)
    		 10 N/A URS000080E04B N/A synthetic
    construct
    32630    		 21653694 Assembly1
    protein:B:828~1168 -1,1~8
    838 2ykg:C
    (2.5Å)
    		 10 N/A URS000080DF81 N/A Homo
    sapiens
    9606    		 22000018
    M054_0.6

    M109_0.6

    M044_0.6    		 Assembly1
    protein:A:236~922 1~2,4~6
    839 2ykg:D
    (2.5Å)
    		 10 N/A URS000080DF81 N/A Homo
    sapiens
    9606    		 22000018
    M054_0.6

    M109_0.6

    M044_0.6    		 Assembly1
    protein:A:236~922 4~5,8~10
    840 2ykr:A
    (9.8Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177 Escherichia
    coli
    DH5[alpha]
    668369    		 21788480 Assembly1
    protein:B:8~225 828~831,839,848~849,859,1072~1
    075,1093,1095~1105,1110~1113,1
    117,1156~1160,1170~1172,1180,1
    183~1186
    protein:C:1~206 421~422,1055~1062,1065,1106~11
    09,1111~1112,1188~1197,1204~12
    06,1256~1257,1278
    protein:D:1~205 4~6,8,26,401~413,418~420,425~4
    30,436~439,489~491,493,495,499
    ,505~513,534,539~548,558,613~6
    14,618~621
    protein:E:9~158 6~10,15~19,298,559~560,566,864
    ,921,1069,1072~1074,1076~1082,
    1191,1396~1398
    protein:F:1~100 663~664,671~675,711,735~740
    protein:G:1~151 932~933,935~940,1091~1093,1238
    ~1240,1289~1291,1297~1298,1335
    ~1336,1345~1347,1349~1351,1372
    ~1383
    protein:H:1~129 586~587,589~591,597~602,639~64
    4,652~653,755~756,824~827,875~
    879
    protein:I:3~129 941~945,967~969,972,1116~1119,
    1128~1131,1146~1149,1177~1180,
    1187,1230~1233,1247~1252,1289~
    1292,1341~1344,1347~1350,1366~
    1373
    protein:J:5~102 963~964,970,972~973,1059~1061,
    1123~1126,1150~1153,1198~1200,
    1202,1253~1255,1278~1281,1355~
    1356,1366~1369
    protein:K:12~128 674~678,683~692,694~698,704~70
    8,715~718,777~781,784,796~797,
    799~800,803~804,1506,1522~1524
    protein:L:1~123 23~24,32~38,300~303,361~364,50
    0~503,518~523,525~529,537~539,
    550~554,556~564,567,584~585,87
    9~882,884~885,910~913,1492
    protein:M:1~114 946~954,1224~1230,1243~1244,12
    94~1297,1299,1302,1306~1311,13
    21~1322,1328~1333
    protein:N:1~100 973~977,979~983,994~995,1003,1
    007~1021,1047~1050,1113~1115,1
    187~1188,1202~1203,1216~1220,1
    272~1273,1316~1318,1358~1361
    protein:O:1~88 579~582,656~659,666~669,727~73
    0,739~742,748~755,763~765,808~
    809
    protein:P:1~82 2,107~108,110~111,134~137,227~
    229,309~310,374~378,389~393,44
    9~454,474,484,486,615~618,624~
    627
    protein:Q:3~82 126~130,234~238,253~256,264~26
    7,273,275~277,280,301,563~564,
    585~586,597,604,635~637
    protein:R:19~73 663~665,673~676,718~722,724~72
    5,733~735,834~836
    protein:S:2~80 955~960,979,986~987,1012~1015,
    1219~1227,1311~1322,1325
    protein:T:2~86 57~62,102~108,110~111,132,175~
    178,184~187,192~196,260~263,32
    2~323,325,331~332,1447~1448,14
    55~1458
    protein:U:3~53 677~678,718,778,816~818,1524~1
    530,1534
    protein:W:35~337 519~520,788~793,945~946,1229~1
    230,1338~1339,1409~1411,1491~1
    497
    841 2yu9:R
    (3.4Å)
    		 10 N/A URS000080E03D N/A synthetic
    construct
    32630    		 17129781 Assembly1
    protein:A:3~1450 1,10
    protein:B:20~1224 2,5~6,8~10
    842 2zh1:B
    (2.8Å)
    		 33 N/A URS000080E304 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~22,24,31~33
    843 2zh2:B
    (2.66Å)
    		 34 N/A URS000080E1F3 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~24,31~34
    844 2zh3:B
    (2.5Å)
    		 34 N/A URS000080DD47 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~24,31~34
    845 2zh4:B
    (2.65Å)
    		 34 N/A URS000080DDD2 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~16,21~24,31~34
    846 2zh5:B
    (2.6Å)
    		 34 N/A URS000080DFD1 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~24,31~34
    847 2zh6:B
    (2.5Å)
    		 34 N/A URS000080DFD1 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~2,14~16,21~24,31~34
    848 2zh7:B
    (3.0Å)
    		 33 N/A URS000080E09B N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:2 1~3,14~15,21~24,31~33
    849 2zh8:B
    (2.65Å)
    		 34 N/A URS000080E352 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~24,31~34
    850 2zh9:B
    (2.9Å)
    		 33 N/A URS000080DD90 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~15,21~24,31~33
    851 2zha:B
    (2.95Å)
    		 33 N/A URS000080DD90 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:1 1~3,14~16,21~24,31~33
    852 2zhb:B
    (3.05Å)
    		 34 N/A URS000080DF03 N/A synthetic
    construct
    32630    		 18583961 Assembly1
    protein:A:2 1~3,14~15,21~24,31~34
    853 2zi0:C
    (2.82Å)
    		 20 N/A URS000080E31B N/A synthetic
    construct
    32630    		 18600235 Assembly1
    protein:A:5~64 9~17
    protein:B:4~58 1~2,5~6
    854 2zi0:D
    (2.82Å)
    		 20 N/A URS000080E31B N/A synthetic
    construct
    32630    		 18600235 Assembly1
    protein:A:5~64 1~3,5~6
    protein:B:4~58 10~15,17
    855 2zjp:X
    (3.7Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:1:2~54 2323,2401
    protein:2:1~46 469~470,699,1322,1628,1636
    protein:3:2~64 602,2340,2399
    protein:4:1~37 1041~1044,1135,2444~2446,2456~
    2457,2505~2507,2722~2723,2733~
    2737
    protein:5:1~12 1078~1079,1106
    protein:A:33~272 704~707,742,777,786~787,791~79
    5,797,1383,1504,1506~1507,1516
    ~1517,1582~1586,1779~1783,1787
    ~1788,1790~1792,1794~1797,1804
    ~1806,1808~1813,1816~1820,1835
    ~1836,1884~1886,1954~1955,2056
    ~2057,2069,2186~2187,2200~2202
    ,2205~2206,2218,2570,2577~2578
    ,2580
    protein:B:1~205 583,757,1141,1671~1675,1687,16
    92,1976~1977,1980,2007~2008,20
    15,2033~2036,2485,2490~2492,25
    50~2551,2553~2554,2557,2597~26
    00,2612,2614~2617,2656,2658~26
    61,2703~2704,2709~2711,2713~27
    14,2752~2754,2764~2767,2785~27
    86,2795~2798,2805~2806
    protein:C:2~198 37,39,310,331~334,453~456,460~
    461,463~464,594~597,599,609~61
    1,618,626,628~630,672~673,682,
    684~685,687~688,811,813~814,12
    18,1257,1259~1261,1268~1271,20
    42~2043,2423~2424
    protein:D:3~179 2278,2281~2285,2288~2289,2291~
    2294
    protein:E:5~175 2507~2510,2632,2636~2638,2646,
    2725~2729,2737
    protein:F:1~144 1069~1072,1074~1076,1087~1088,
    1091~1092,1099,1109
    protein:G:30~171 5,7~8,537~539,547,566~567,1006
    ,1016~1018,1023,1033,1142,1148
    ~1149,1151~1152,1154,2494,2620
    ~2621,2760,2873
    protein:H:1~134 1682~1685,1935,1978~1979,2540~
    2543,2545,2627~2629,2652~2655,
    2662~2664,2706
    protein:I:4~144 172~173,227~229,575~577,596,60
    8~609,614~615,637~638,642~644,
    647~648,673~676,678,680,683~68
    4,817,820,823~824,826,844~845,
    953~954,1203,1217~1219,1256~12
    58,2338~2339,2371~2372,2383,23
    94~2395,2409
    protein:J:6~141 876~877,883~884,886,917~920,92
    2~923,965~969,971,1041,2228~22
    30,2254~2257,2438,2446~2447,24
    63~2464,2474~2475
    protein:K:3~115 1288~1292,1300~1301,1469~1470,
    1666~1668,1670,1985,2669,2680~
    2681,2684,2686~2688,2693,2792~
    2793,2795~2797,2813~2815,2825~
    2826,2844,2847~2848,2855~2857
    protein:L:8~111 2271~2275,2313,2355~2357
    protein:M:2~109 1744~1745,2661~2662,2698,2795,
    2804,2820,2823~2824,2850~2851
    protein:N:2~118 18~19,29,456~458,461,541~545,5
    70,572~573,589~593,825,986,988
    ,1004~1008,1021~1022,1162~1164
    ,1166~1167,1212,1229~1230,1240
    ,1260~1261,1263~1265,2002~2004
    protein:O:5~98 573~574,827,985,1003~1004,1172
    ~1173,1201~1202,1235~1239
    protein:P:8~134 23~25,319,497~499,501,503~508,
    511~512,518,527,529~530,759~76
    1,764,1246~1247,1274~1275,1279
    ,1335~1338,1630,1992~1997,2777
    protein:Q:2~94 57,63~64,1324~1325,1351~1355,1
    404~1406,1613~1618
    protein:R:4~113 34,83~86,100,309,311,320~321,3
    37~338,340,347~349,490~494
    protein:S:1~175 888,916,1051,1129
    protein:T:2~85 869~871,933~935,2235~2236,2240
    ~2241,2249~2250,2309~2311,2331
    ~2336,2342~2345,2363,2366
    protein:U:8~79 164~165,178,393~394,400~401,40
    9~411,413,2062~2064,2074,2208~
    2210,2374~2375,2400,2411
    protein:V:1~66 60,71~72,75~76,94~95
    protein:W:1~55 862~865,940~942,980,999~1000,1
    168~1169,1198
    protein:Y:2~59 15~17,526,588,760,1275~1277,12
    79,1998~2004,2028~2029,2037~20
    41,2556,2590,2593~2594,2790,28
    58~2862
    856 2zjp:Z
    (3.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:D:3~179 32~33,43~47,56~59
    protein:J:6~141 92~94
    protein:L:8~111 8~11,30~31,39~40,50~53,115~119
    protein:S:1~175 75,77~78,94,106~108
    protein:T:2~85 13~14
    857 2zjq:X
    (3.3Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:A:33~272 704~705,742,777,786~787,791~79
    5,797,1383,1506~1507,1516~1517
    ,1582~1586,1779~1783,1787~1792
    ,1794~1796,1804~1806,1808~1813
    ,1816~1819,1835~1836,1884~1886
    ,1954,2186~2187,2200~2202,2205
    ,2218,2569~2570,2577~2579
    protein:B:1~205 583,1141,1671~1675,1692,1976~1
    977,1980,2007~2008,2015,2033~2
    036,2490~2492,2550~2551,2553~2
    554,2557~2558,2597~2600,2614~2
    617,2656,2658~2661,2703~2704,2
    709~2711,2713~2714,2751~2754,2
    764~2767,2786~2787,2796~2798,2
    805~2806,2809
    protein:C:2~198 37~39,310,331~334,453~456,460,
    463~464,480,594,596~599,610~61
    1,617~618,626~630,672~673,682,
    684~688,811,813~814,820,1216,1
    218,1257,1259~1261,1267~1270,2
    042~2043,2423~2424
    protein:D:3~179 2278,2281~2285,2288~2294
    protein:E:5~175 1046,2508~2510,2632,2636~2638,
    2645~2646,2723~2729,2737,2739
    protein:F:1~144 1069~1072,1074~1076,1087,1091~
    1092,1099
    protein:G:30~171 5,7~8,538~539,566~567,1006,101
    6~1017,1023,1033,1142,1148~115
    2,2022,2494~2495,2619~2621,276
    0,2873
    protein:H:1~134 1682~1686,1935,1978~1979,2526,
    2540~2542,2545,2627,2629,2634,
    2652~2654,2662~2664,2706
    protein:I:4~144 172~173,221,227~228,574,576~57
    7,596,607~609,614~615,637~638,
    642~644,647~648,673~676,678~68
    0,683~684,817,819~820,824,826,
    844~845,953~954,1203,1217~1220
    ,1256~1258,2338~2339,2371~2372
    ,2383,2394~2395
    protein:J:6~141 876,883~884,886,917~920,922~92
    3,964~965,967~969,2229~2230,22
    54~2257,2438,2446~2447,2463~24
    64,2473~2475
    protein:K:3~115 1289~1292,1300~1301,1341,1469~
    1470,1666~1671,1985,1992,2668,
    2681,2684~2688,2693,2791~2792,
    2795~2797,2813~2815,2825~2827,
    2847~2848,2855~2857
    protein:L:8~111 2271~2274,2313,2355~2357
    protein:M:2~109 1744~1745,2661,2698,2795,2804,
    2820,2822~2824,2842,2850~2851
    protein:N:2~118 18~19,29,456~459,461,541~544,5
    62,570,572~573,589~593,825,986
    ~988,1003~1008,1020~1022,1162~
    1164,1166~1167,1229~1230,1240,
    1260~1261,1263~1265,2002~2004
    protein:O:5~98 573~575,827,1003~1005,1007,117
    1~1173,1201~1202,1234~1238
    protein:P:8~134 24~25,319,496~501,503~507,518,
    527~528,759~761,764,1247,1274~
    1275,1278~1279,1336~1337,1630~
    1631,1992~1997,2776~2777
    protein:Q:2~94 57,63~64,1325,1348~1349,1352~1
    355,1404~1406,1614~1618
    protein:R:4~113 34,83~86,100,309,320~321,337~3
    38,340,347~349,491~494
    protein:S:1~175 1051,1129
    protein:T:2~85 869~871,933~935,2236~2238,2240
    ~2241,2250,2309~2311,2315,2331
    ~2335,2342~2345,2363,2366
    protein:U:8~79 164~166,178,393~394,400~401,40
    9~413,1801,2063~2065,2074,2208
    ~2210,2374~2375,2400,2411
    protein:V:1~66 60,71~72,75~76,94~95
    protein:W:1~55 862~865,940~942,980~981,999~10
    00,1011~1012,1168~1169,1198
    protein:Z:2~59 15~17,526~527,588,760,1275~127
    7,1279,1998~2004,2028~2029,203
    7~2039,2556,2590,2594,2790~279
    1,2858~2860,2862
    protein:2:1~46 123,470,699
    protein:3:2~64 602,640,2399
    protein:4:1~37 1041~1043,1135,2444~2446,2456~
    2457,2505~2507,2518,2722,2735~
    2737
    858 2zjq:Y
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E31C RF00001 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:D:3~179 33,43~47,56~59
    protein:J:6~141 92~94
    protein:L:8~111 8~11,29~31,39~40,50~53,115~119
    protein:S:1~175 75,77~78,106~109
    protein:T:2~85 13~14
    859 2zjr:X
    (2.91Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:A:33~272 704~705,742,777,786~787,791~79
    5,797,1383,1506~1507,1516~1517
    ,1582~1586,1765,1779~1783,1787
    ~1791,1794,1796~1797,1804~1806
    ,1808~1812,1816~1818,1835~1836
    ,1884~1886,1954,2056,2186~2187
    ,2200~2202,2205,2218,2570,2577
    ~2580
    protein:B:1~205 583,1141,1671~1675,1690,1692,1
    976,1980,2007~2008,2015,2033~2
    036,2490~2493,2550~2551,2553~2
    554,2557~2558,2597~2600,2612,2
    614~2617,2656,2658~2661,2703~2
    704,2709~2711,2713~2714,2752~2
    753,2764~2767,2786~2787,2795~2
    798,2805~2806
    protein:C:2~198 36~39,310,331~334,453~456,460~
    464,480,594~597,599,609~611,61
    7~618,626~630,672~673,682,684~
    688,813~814,1216,1218,1257,125
    9~1261,1267~1270,2042~2043,242
    3~2424
    protein:D:3~179 2278,2282~2285,2288~2289,2291~
    2294
    protein:E:5~175 1046,2508~2510,2632,2636~2638,
    2645~2647,2723~2729,2732,2737
    protein:F:74~144 1069~1071,1074~1075,1086~1087,
    1091~1092,1099
    protein:G:30~171 5,7~8,537~539,566~567,1006,101
    6~1018,1023,1033,1142,1148~114
    9,1151~1152,2022,2620~2621,276
    0,2873
    protein:H:1~134 1682~1685,1935,1978~1979,2526,
    2540~2543,2545,2627,2634,2652~
    2654,2662~2664,2706
    protein:I:4~144 172~173,221,227~228,574~577,59
    6,607~609,614~615,637~638,642~
    644,647~648,673~676,678~680,68
    3~684,817,820,824,826,844~845,
    953~954,1203,1217~1219,1256~12
    58,2338~2339,2371~2372,2383,23
    94~2395
    protein:J:6~141 876,883~884,886,917~920,922~92
    3,964~965,967~969,2229~2230,22
    54~2257,2438,2446~2447,2462~24
    64,2473~2475
    protein:K:3~115 1289~1292,1300~1301,1340,1469~
    1470,1666~1668,1670~1671,1985,
    1992,2669,2680~2681,2684,2686~
    2688,2693,2703,2792,2795~2797,
    2814~2815,2825~2827,2844,2848,
    2855~2857
    protein:L:8~111 2271~2275,2313,2355~2357
    protein:M:2~109 1744~1745,2661,2698~2699,2795,
    2804,2820,2823~2824,2842,2850~
    2851
    protein:N:2~118 18~19,28~29,456~459,461,541~54
    6,562,570,572~573,589~593,825,
    986~988,1004~1008,1020~1022,11
    62~1164,1166~1167,1212,1229~12
    30,1260~1261,1264~1265,2002~20
    04
    protein:O:5~98 573~574,827,984,1003~1005,1007
    ,1171~1173,1201~1202,1234~1238
    protein:P:8~134 24~25,319,497~501,503~507,511~
    512,514,518,527~528,759~761,76
    4,1224,1247,1274~1275,1278~127
    9,1335~1337,1630~1631,1992~199
    7,2777
    protein:Q:2~94 57,63~64,1324,1348~1349,1351~1
    355,1404~1406,1614~1618
    protein:R:4~113 34,83~86,309,320~321,337~338,3
    40,347~349,489~490,492~494
    protein:S:1~175 1051,1129
    protein:T:2~85 869~871,934~935,2236,2240~2241
    ,2249~2250,2254,2309~2311,2315
    ,2331~2335,2343~2344,2363,2366
    protein:U:8~79 165,393~394,400~401,409~413,13
    78,2062~2065,2074,2208~2210,23
    74~2375,2400,2411
    protein:V:1~66 60,71,75~76,94~95
    protein:W:1~55 862~865,940~942,980~981,999~10
    00,1168~1169,1198
    protein:Z:2~59 15~17,526~527,588,760,1275~127
    7,1279,1998~2000,2002,2004,202
    8~2029,2037~2039,2556,2590,259
    4,2602,2790~2791,2858~2862
    protein:1:2~54 2323,2401
    protein:2:1~46 699,1636
    protein:3:2~64 602,2372
    protein:4:1~37 1041~1044,1135,2444~2446,2456,
    2505~2507,2518,2722,2733,2735~
    2737
    860 2zjr:Y
    (2.91Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 18406324 Assembly1
    protein:D:3~179 32~33,43~47,56~59
    protein:J:6~141 92~94
    protein:L:8~111 8~11,29~31,39~40,50~53,115~119
    protein:S:1~175 75,77~78,94,106~109
    861 2zko:C
    (1.7Å)
    		 21 N/A URS000080E31B N/A synthetic
    construct
    32630    		 18813227 Assembly1
    protein:A:1~70 6~8,17
    protein:B:1~70 4~7,16
    862 2zko:D
    (1.7Å)
    		 21 N/A URS000080E31B N/A synthetic
    construct
    32630    		 18813227 Assembly1
    protein:A:1~70 4~7,16
    protein:B:1~70 6~8,17
    863 2zm5:C
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19435325 Assembly1
    protein:A:9~314 26~41
    864 2zm5:D
    (2.55Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19435325 Assembly2
    protein:B:7~311 26~30,32~41
    865 2zm6:A
    (3.3Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF07 RF00177 Thermus
    thermophilus
    274    		 N/A Assembly1
    protein:B:7~228 828~829,1073~1075,1099~1101,11
    03~1104,1111
    protein:C:2~207 421,532,1055~1058,1060~1061,11
    07~1109,1111~1113,1189~1191,12
    05~1206
    protein:D:2~209 8,402~413,426~430,437,489~490,
    499,508~509,511~512,541~547,61
    6,619~620
    protein:E:5~154 6~9,15~16,18~19,559,864,921~92
    2,1069~1071,1073~1074,1078~108
    1,1192,1396~1398
    protein:F:1~101 670,673~674,710~711,736~738
    protein:G:2~154 932~933,935,939~940,1092,1173,
    1240~1241,1290~1292,1297~1298,
    1346,1351,1373~1380
    protein:H:1~138 4,586~587,590,597~600,632,640~
    643,653,755,824~826,828,861,87
    5~878
    protein:I:4~128 942,967~968,1117~1119,1127~113
    1,1147~1149,1178~1180,1186~118
    8,1231~1233,1248~1251,1291,134
    2~1343,1346~1351,1366~1373
    protein:J:3~100 964,972~973,975,1059~1061,1123
    ~1125,1150~1153,1189,1198~1199
    ,1254~1255,1279~1280,1366~1368
    protein:K:11~125 675,677,683~692,694~695,704~70
    8,716~718,778~780,798,1523~152
    5
    protein:L:5~128 24,33~37,49,362~363,501~503,51
    8~523,526~529,537~539,552~553,
    556,562~564,567~568,880~881,90
    9~913,1411,1491
    protein:M:2~121 946~955,1225~1229,1295,1297,13
    02,1306~1310,1321,1328~1330
    protein:N:2~61 973~976,979~983,994,1047~1049,
    1060,1114~1115,1186~1189,1202~
    1203,1216~1217,1219,1316~1317,
    1358~1359,1368~1369
    protein:O:2~89 579,656~659,667~668,728,739~74
    2,750~752,754~755,764~765
    protein:P:1~83 43~44,112,134~137,227~229,310~
    311,375~377,390~393,449,452,45
    4,462~463,474,608,617,624~627
    protein:Q:2~101 127~130,190E,234~238,246~247,2
    53~256,264~267,275~280,564,584
    ~586,760
    protein:R:21~88 663~664,674,718~721,735~736,83
    5
    protein:S:2~81 958,986,1014~1015,1219~1223,12
    25,1227,1310~1314,1318~1321
    protein:T:8~101 103~104,107~108,132,175~177,18
    5~188,191~195,222~223,259~263,
    323~324,332~333,1438~1439,1455
    ,1459~1460
    protein:V:2~25 1235~1236,1242,1244,1267,1286,
    1304~1305,1325~1329
    866 2zni:C
    (3.1Å)
    		 72 N/A URS000080DE82 N/A synthetic
    construct
    32630    		 19118381 Assembly1
    protein:A:10~288 9~10,67
    protein:B:10~288 4~5,10~13,23~26,69~76
    867 2zni:D
    (3.1Å)
    		 72 N/A URS000080DE82 N/A synthetic
    construct
    32630    		 19118381 Assembly1
    protein:A:10~288 5,10~13,23~26,69~76
    protein:B:10~288 9~10,66~67
    868 2zue:B
    (2.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00000D2896 RF00005 Pyrococcus
    horikoshii
    53953    		 19656186 Assembly1
    protein:A:2~629 905,907,913~914,919~920,920A,9
    23~925,935~941,956,969~972,974
    869 2zuf:B
    (2.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS00000D2896 RF00005 synthetic
    construct
    32630    		 19656186 Assembly1
    protein:A:2~629 904~905,907,913~914,919~920,92
    0A,923~925,935~941,956,970~972
    ,974
    870 2zxu:C
    (2.75Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19435325 Assembly1
    protein:A:9~314 26~30,32~41
    871 2zxu:D
    (2.75Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19435325 Assembly2
    protein:B:7~311 26~41
    872 2zzm:B
    (2.65Å)
    		 84 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001612D2 RF00005 Methanocaldococcus
    jannaschii
    2190    		 19749755 Assembly1
    protein:A:2~334 11~12,19~20,22~26,34~41,56~57
    873 2zzn:C
    (2.95Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00000B8EA0 RF00005 Methanocaldococcus
    jannaschii
    2190    		 19749755 Assembly1
    protein:A:1~336 11~13,19~23,25~26,32~34,36~41,
    56~57,69
    874 2zzn:D
    (2.95Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00000B8EA0 RF00005 Methanocaldococcus
    jannaschii
    2190    		 19749755 Assembly2
    protein:B:2~336 11~12,18~20,25~26,32~34,36~41,
    56~57
    875 3a2k:C
    (3.65Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E29F RF00005 Bacillus
    subtilis
    1423    		 19847269 Assembly1
    protein:A:1~462 1,10~13,26~27,33~40,67~73,75
    876 3a2k:D
    (3.65Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E29F RF00005 Bacillus
    subtilis
    1423    		 19847269 Assembly2
    protein:B:1~462 1,10~11,26~27,33~40,67~70,72~7
    5
    877 3a6p:D
    (2.92Å)
    		 22 N/A URS000080E2FD N/A synthetic
    construct
    32630    		 19965479 Assembly1
    protein:A:2~1136 1,4,8~9,17
    878 3a6p:E
    (2.92Å)
    		 24 N/A URS000080E376 N/A synthetic
    construct
    32630    		 19965479 Assembly1
    protein:A:2~1136 47,49,51,55~57,61~63
    879 3a6p:I
    (2.92Å)
    		 22 N/A URS000080E2FD N/A synthetic
    construct
    32630    		 19965479 Assembly2
    protein:F:2~1136 1,17
    880 3a6p:J
    (2.92Å)
    		 24 N/A URS000080E376 N/A synthetic
    construct
    32630    		 19965479 Assembly2
    protein:F:2~1136 59,61~63
    protein:H:7~176 49~50
    881 3adb:C
    (2.8Å)
    		 92 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:A:-1~248 1,13,15,19~20,20A,21~24,41,47M
    ,56,68~69,75~76
    882 3adb:D
    (2.8Å)
    		 92 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:B:-10~248 1~2,15,19~20,20A,21~22,42,56,6
    8~71,73~76
    883 3adc:C
    (2.9Å)
    		 88 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:A:-1~248 1~2,15,19~20,20A,21~23,41,68~7
    1,73~76
    884 3adc:D
    (2.9Å)
    		 92 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:B:-1~248 1~2,16,19~20,20A,22,56,69~76
    885 3add:C
    (2.4Å)
    		 88 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:A:-2~248 1,14~15,19~20,20A,21~23,41,47M
    ,68~69,75~76
    886 3add:D
    (2.4Å)
    		 88 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE1A RF01852 Methanopyrus
    kandleri
    2320    		 20705242 Assembly1
    protein:B:-1~248 1~2,15,19~20,20A,56,68~71,73~7
    4
    887 3adi:D
    (3.2Å)
    		 10 N/A URS000080E285 N/A synthetic
    construct
    32630    		 20462493 Assembly1
    protein:A:14~84 4~6
    888 3adi:E
    (3.2Å)
    		 10 N/A URS000080DD4D N/A synthetic
    construct
    32630    		 20462493 Assembly1
    protein:A:14~84 7~10
    889 3adl:B
    (2.2Å)
    		 10 N/A URS000080DDD4 N/A synthetic
    construct
    32630    		 20462493 Assembly1
    protein:A:152~227 9~10
    890 3adl:C
    (2.2Å)
    		 10 N/A URS000080DDD4 N/A synthetic
    construct
    32630    		 20462493 Assembly1
    protein:A:152~227 4~6
    891 3aev:C
    (2.8Å)
    		 11 N/A URS00000597CF N/A synthetic
    construct
    32630    		 20363226 Assembly1
    protein:B:26~208 1~11
    892 3agv:S
    (2.15Å)
    		 19 N/A URS00021ED90B N/A synthetic
    construct
    32630    		 20675355 Assembly1
    protein:A:241~443 4~8,20~21
    893 3agv:U
    (2.15Å)
    		 24 N/A URS00021ED90B N/A synthetic
    construct
    32630    		 20675355 Assembly1
    protein:B:237~444 4~5,7~8,20~21
    894 3akz:E
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000002EA11 RF00005 Thermotoga
    maritima
    2336    		 20882017 Assembly4
    protein:A:24~486 3~7,11~13,24~25,34~39,68~71,74
    ~76
    895 3akz:F
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000002EA11 RF00005 Thermotoga
    maritima
    2336    		 20882017 Assembly1
    protein:B:24~486 3~8,11~13,24~26,34~38,69~71,74
    ~76
    896 3akz:G
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000002EA11 RF00005 Thermotoga
    maritima
    2336    		 20882017 Assembly3
    protein:C:24~486 3~6,11~13,24~26,34~39,69~71,74
    ~76
    897 3akz:H
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000002EA11 RF00005 Thermotoga
    maritima
    2336    		 20882017 Assembly2
    protein:D:24~486 3~7,11~13,25~26,34~39,69~71,74
    ~76
    898 3al0:E
    (3.368Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... URS000002EA11 RF00005 synthetic
    construct
    32630    		 20882017 Assembly1
    protein:B:1~482 1,18~20,54,56,61~63
    protein:C:3~590 4~6,12~14,24~25,34~38,69~72,74
    ~76
    899 3am1:B
    (2.4Å)
    		 81 GO:0030533 (F) triplet codon-amino aci... URS000080E1B0 RF01852 synthetic
    construct
    32630    		 20870747 Assembly1
    protein:A:3~252 1~2,19,21~25,65,76~81
    900 3amt:B
    (2.9Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E317 RF00005 Archaeoglobus
    fulgidus
    2234    		 22002223 Assembly1
    protein:A:0~420 1,24~26,33~40,69~72
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.